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Query: IDP92081 thymidylate kinase, putative [Toxoplasma gondii ME49] TGME49_106970 [Toxoplasma gondii ME49], from CSGID

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MAAFTPKRGCLVVFEGIDRSGKSTQARLAYERLTKEGHAAELIRFPDRTTPIGQVLDRFLANASWSSDGQHPQVPPPQLTHLLFAANRWEAQARILRALGEGRTVLVDRYSFSGIAYTVGAAPSVAETEATRLRREAEASGDVEKTAEAVAASTAATGAPVDATFCRESERGLLAPDAVFFLDVAPQETQKRGGYGDEVYEKLATQERVYQVYRQFDNLPYWRRIAASSLSIEELHEKLFEQLKSVIEATQPDQLLPLGSTGDGRRRLWSTSLLast
1 -105.000IDP92081 thymidylate kinase, putative [Toxoplasma gondii ME49] TGME49_106970 [Toxoplasma gondii ME49]  ali  100  1MAAFTPKRGCLVVFEGIDRSGKSTQARLAYERLTKEGHAAELIRFPDRTTPIGQVLDRFLANASWSSDGQHPQVPPPQLTHLLFAANRWEAQARILRALGEGRTVLVDRYSFSGIAYTVGAAPSVAETEATRLRREAEASGDVEKTAEAVAASTAATGAPVDATFCRESERGLLAPDAVFFLDVAPQETQKRGGYGDEVYEKLATQERVYQVYRQFDNLPYWRRIAASSLSIEELHEKLFEQLKSVIEATQPDQLLPLGSTGDGRRRLWSTSL 273
2 -67.700IDP90611 gene: tmk; thymidylate kinase [Vibrio cholerae O1 biovar eltor str. N16961] VC2016 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  22  2.......NAKFIVIEGLEGAGKSTAIQVVVETLQQNGIDITRTREPG-GTLLAEKLRALVKEE------HPGEELQDITELLLVYAARVQLVENIKPALARGEWVVGDRHDMSSQAYQGGGRQIAPST----------------------------------MQSLKQTALGDFKPDLTLYLDIDPKLGLERARGRGDRIEKMSFFERARERYLELANSDDSVVMIDAAQSIEQVTADIRRALQDWLSQVNR..................... 211
3 -56.700IDP90678 gene: tdk; thymidylate kinase [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj0766c [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]  ali follow..  25  1.........MYVVFEGIDCVGKSTQISLLKEIYK----DAIFTLEPG-GTELGKHLREILLNK--------THPINKRAELLLFLADRAQHFEEILK--NQNKLIISDRSFISGMAYAKD-----------------------------------------LLFALNSFALENFFPQKIIFLKGDANLIQERLSQKEDSIEKREYFLSVQDKLEKVLHFSVEILTLDAKESKEKLHQQIKEFLQ............................. 192
4 -25.600IDP05086 deoxynucleoside kinase family protein [Bacillus anthracis str. Ames] BA_0014 [Bacillus anthracis str. Ames]  ali follow..  13  4RQKYDIPNDAVITIAGTVGVGKSTMTTALANAL-----GYRTSFEKVDSNPY---LDKFYADFTRWS----------FHLQVYFLAERFK---EQKRIFEYGGGFVQDRSIYEDTGIFAKMHHEKGTMTETDYETYKGLFDAMVM------------------------TPYFPHPDLLIYLEGSFDDIVDRIQERGRPMEQIEYWKEMHGRYENWINNFNSCPVLRLNINDGDSIEPIIKKIGHFLKQTR...................... 218
5 -13.600IDP06121 gene: gmk; guanylate kinase [Helicobacter pylori J99] NP_223024 [Helicobacter pylori J99]  ali follow..  13  2.....NNDFNLLILSGPSGAGKSTLTKYLQEKIPKTHFSLSTTRKPREGEVDGLHYNFVSEEEFKQGIEKGQFLEWAIVHNHYYGTSK----IPVEKALKEGKIVIFD----------------------------------------------------IDVQGHEILKKHYPNACSVFISTKNQEILKERLLLRGTDSKE-TIEKRLINAYKEMQCLESFDYLI-INEDLEKSKEIILSIAKTLVHRLKAFNFEKI............... 197
6 -13.600IDP90623 gene: gmk; guanylate kinase [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj1177c [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]  ali follow..  12  2.....KLQGFVLLISGPSGAGKSTLLKKLFDEFEDE---SSTTRKPREGEKNGIHYHFISHEEFQKGIDSDHFLEWARVHENFYGTSL----KHTQNALDNGKIVVFD----------------------------------------------------IDVQGFKIARKKMADKIVSVFITTKNKDELKKRLIKRNTDTIIQLEKRLQNASDEMKELSEYDYLI-INDELKQSYEALRAILIAHKFRTKGQNLGQI............... 199
7 -13.500IDP02096 gene: prk; phosphoribulokinase 1 [Yersinia pestis CO92] YPO0178 [Yersinia pestis CO92]  ali follow..  11  2.....STKHPVIAVTGSSGAGTTTTSLAFRKIFQQLDIRAAQIEGDSFHRYTRPEMDA--AIRKARDQGRHISYFGPEANDF-------GQLEQSVAEYSKHGTGRSRKY------HTYDEAVPYNQIPGTFTPWEPLPEPTDVLFYEGLHGGVVTEHHDV---------------DLLVGVVPIVNLEWIQK--VRDTGERGHSREAVMDSVVRSMDDYINY-ITPQFSRTHINFQR................................... 207
8 -13.500IDP02084 gene: adk; adenylate kinase [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj0639c [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]  ali follow..  14  5...........FLIIGAPGSGKTTDASLIAQAITHYSTGDLLRAEVASGSELGKTIDSFISKGNLVPLDVVINTIVYALKA------------------APTKTIIIDGYPRSVEQMMEFDKVLS--------------------------------------------EQNEICLKGVIEVRVSEEVAKERVLGRNRGADRMKVYTEPLNEILDFYQKKKLHFIIDGERTIEPIVADMKELIKKI........................... 189
9 -13.400IDP01891 gene: prkB; putative phosphoribulokinase [Salmonella typhimurium LT2] STM3464 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  10  2.....SAKHPVIAVTGSSGAGTTTTSLAFRKIFAQLNLHAAEVEGDSFHRYTRPEMDM--AIRKARDAGRHISYFGPEANDF-------SLLEHTFIEYGQTGKGQSRKY------HTYDEAVPWNQVPGTFTPWQPLPEPTDVLFYEGLHGGVVTPQHDV---------------DLLVGVVPIVNLEWIQK--IRDTSERGHSREAVMDSVVRSMDDYINY-ITPQFSRTHINFQ.................................... 206
10 -13.300IDP01471 phosphoribulokinase VC2613 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  11  2.....SAKHPIIAVTGSSGAGTTTTSEAFRKMFNMMSIKPAWVEGDSFHRFTRPEMDVEIRKAREQGRHISYFGPQ---------ANDFPTLEEFFRQYGKVGTGQVRRY------HTFDEAVPYNQMPGTFTPWQSLPENSDVLFYEGLHGGVVDGDVNV---------------DFLIGMVPIVNLEWIQ-KYVRDTRDRGHSREAVMDSIVRSMDDYLKF-ITPQFSRTHINFQ.................................... 206
11 -13.000IDP04119 adenylate kinase [Bacillus anthracis str. Sterne] BAS0131 [Bacillus anthracis str. Sterne]  ali follow..  11  3...........LILMGLPGAGKGTQAEQIVAKYNIPHISTMFRAAMKAETEMGLQAKSFIDKGALVPDEVTIGIVRERLS---------------QEDCVRG--FLLDGFPRT--VAQASALEEIMKDLGKKIDYVLNINVDSGLLLKRLTGRRICKECG------ATYHLEFNAPAKADVCDKCGGELYQRSDDNEETVNRLDVNIKQTKPLLDFYEELGYLQSINGEQDINKVFADIDVLIGGL........................... 215
12 -13.000IDP92034 adenylate kinase, putative [Toxoplasma gondii ME49] TGME49_024900 [Toxoplasma gondii ME49]  ali follow..  11  30..ACLAKPEGRYIFIGAPGSGKGTQSVKLKKSHCLCHLSTMLRHAVATGTEYGKQAKAKLDAGELVSDEIVLGLIDEKLK---------------TPECRRG--FILDGFPRN--EAQAAGLDNLLKQKNQKLDGVLYFDVPDNILVERVSGRRIHLPSG------RVYHVTYHPPKVAGLDDVTGEPLHHRKDDNEATLKRLDVFHKETVPVIEHYAKMGLLYKMDAAKDSTAVTKEMYDFVGKHHKSFFG..................... 257
13 -12.900IDP05129 gene: adk; adenylate kinase [Clostridium difficile 630] CD0091 [Peptoclostridium difficile 630]  ali follow..  11  2.....EMDNMRIILLGPPGAGKGTQAVGIVEKYNIPHISTIFRKNIKEGTELGKKAKEYMDQGLLVPDELTVGLVTDRIS---------------QEDCKNG--FMLDGFPRN--VAQGEHLDIFLKNAGISLDKVVNIEVDKSILVSRAVGRRICKSCG------ATYHVEFNPPKVEGVCDVCQGELYQRADDNEETVKRIQVYLDETKPLVDYYSKQGIIADIKGDQAIDKVFEDIVAALGS............................ 219
14 -12.800IDP90539 gene: gmk; guanylate kinase [Vibrio cholerae O1 biovar eltor str. N16961] VC2708 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  11  19.GTESMGKGTLYIVSAPSGAGKSSLIAALLEQNPTYAMKVSVTRGMRPGEQDGVHYHFVEKEHFIELIGKGEFLEYAEVFGNYYGTSR----VWIENTLNKGIDVFLD------IDWQGAR------------------------------------------------QIRSQMPEAKSIFILPPSKEELERRLNTRGQDSDAIAKRMGEAKSEISHYSEYDYVI-INDDFDVALMDFKAIIRA............................ 207
15 -12.800IDP02139 gene: gmk; guanylate kinase [Bacillus anthracis str. `Ames Ancestor`] GBAA4009 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  13  1...MRSRRGLLIVLSGPSGVGKGTVRKELFSHEDTR---SVTTRKPREGEVDGVDYFFKEREEFEEMIRNEKLLEWAEFVGNYYGTPI----DYVEKTLQEGKDVFLE------IEVQGAI------------------------------------------------QVKKAFPEGVFIFLAPPSLSELKNRIVGRGTETEDIENRLTVAKEEIDMMDAYDYVV-ENDQVELACERIKAIVVG............................ 186
16 -12.500IDP06247 gene: adk; adenylate kinase [Streptococcus pneumoniae TIGR4] NP_344771 [Streptococcus pneumoniae TIGR4]  ali follow..  11  3...........LLIMGLPGAGKGTQAAKIVEQFHVAHISTMFRAAMANQTEMGVLAKSYI----------DKGELVPDEVTNGIVKERLSQDDI------KETGFLLDGYPRT--IEQAHALDKTLAELGIELEGVINIEVNPDSLLERLSGRIIHRVTGETFHKVFNPPVDYKEEDYYQREDDKPETVKRR----------LDVNIAQGEPIIAHYRAKGLVHDIEGNQDINDVFSDIEKVLTNL........................... 211
17 -12.300IDP01198 Cytidylate kinase (CK) (Cytidine monophosphate kinase) (CMP kinase) BA_1518 [Bacillus anthracis str. Ames]  ali follow..  13  2......DKRISIAIDGPAAAGKSTVAKVVAKKLENEEQLMEVVKNVKIEFQQGENTQLVFLNGQDVSEVIRTPEVTNRVSIVAKHRLVREEMVRRQQELAEKGGVVMDGRDIGTHVL--------------------------------------------------------PDAEVKIFMLASVEERAERRHLENMNKGFDSNLEQLKEEIAQLKKADDALELDTTSLSIEEVVQKIMGIVLGVFAK........................ 225
18 -12.200IDP02377 gene: cysC; adenylylsulfate kinase [Bacillus anthracis str. `Ames Ancestor`] GBAA1442 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  15  18.RVKNGHHSFVIWFTGLSASGKSTVANAVARKLFEKNIGNYVLD--------GDNIRHGLNKDLGFSESDRMENI--------------RRIGEVAKLFVDQGAVVLTAFISPFRVDRKQVRDLLAVDEF-----------------------------------------------IEVFVKCPIEECEKRDPKGKARKGDIKEFTGIDSPYE--EPEKAELIVETHKYSIEECAEQIVKYLQE............................ 193
19 -12.200IDP01611 gene: gmk; hypothetical protein lmo1827 [Listeria monocytogenes EGD-e] lmo1827 [Listeria monocytogenes EGD-e]  ali follow..  10  2.....TERGLLIVLSGPSGVGKGTVREAVFKDPETS---SMTTRLPREGEQDGVDYYFRSREVFEQAIKDGKMLEYAEYVGNYYGTPL----EYVEEKLAAGVDIFLE----------------------------------------------------IEVQGAMQVRKAMPEGIFIFLTPPDLSELKNRIIGRGTESME-VVEERMETAKKEIEMMASYDYAV-VNDVVANAVQKIKGIVET............................ 185
20 -12.100IDP90561 gene: cmk; cytidylate kinase [Yersinia pestis CO92] YPO1391 [Yersinia pestis CO92]  ali follow..  13  2.....TAIAPVITVDGPSGAGKGTLCKALAESLSTEEALVPLAAHLDVRFVSQNGQLQVILEGEDVSNEIRTETVGNTASQAAAFPRVREALLRRQRAFREAPGLIADGRDMGTIVF--------------------------------------------------------PDAPVKIFLDASSQERAHRRMLQLQERGFNVNFERLLAEIQELVPAADALVLDSTSMSIEQVIEQALAYAQRILALPLKK.................... 230
21 -12.100IDP06283 gene: gmk; guanylate kinase [Streptococcus pneumoniae TIGR4] NP_346174 [Streptococcus pneumoniae TIGR4]  ali follow..  14  2.....ADRGLLIVFSGPSGVGKGTVRREIFESSENQ---SMTTRAQRPGEVDGVDYFFRTREEFEELIRQGQMLEYAEYVGNYYGTPL----TYVNETLDKGIDVFLE------IEVQGAL------------------------------------------------QVKKKVPDAVFIFLTPPDLDELQDRLVGRGTDSAEIAQRIEKAKEEIALMREYDYAI-VNDQVPLAAERVKCVIEA............................ 185
22 -12.100IDP02572 gene: cmk; hypothetical protein lmo1939 [Listeria monocytogenes EGD-e] lmo1939 [Listeria monocytogenes EGD-e]  ali follow..  2......TKKICIAIDGPAAAGKSTVAKIVAKKLRDTGAMYRAVTAYEDEKAIAALLQKVFVGSENVTEVIRSIEVTNHVSIVAAHPSIREALQERQQVFATEGGIVMDGRDIGTAVL--------------------------------------------------------PNAELKIFLLASVEERAERRYKENMAKGFTGDLDQLKKEIEELKKADDAIEVDTTSMSIDQVANKILSLAELKINN........................ 224
23 -12.000IDP90888 RecName: Full=Cytidylate kinase; Short=CK; AltName: Full=Cytidine monophosphate kinase; Short=CMP kinase Q9KQT2 [Vibrio cholerae]  ali follow..  13  2.....SSHTPVVTVDGPSGAGKGTLCMLLAKKLESEDALVPLATHLDVQFIAEGDLVKVILEGEDVSRELRKEETGMAASKVAALPRVREALLRRQRAFASGIGLVADGRDMGTVVF--------------------------------------------------------PAAEAKIFLDASAEERARRRFKQLQLKGLDVKFDALLSEIQELRPAEDALVLDSTTLTIDEVVEQALQYIESKL.......................... 224
24 -11.800IDP92045 guanylate kinase, putative [Toxoplasma gondii ME49] TGME49_042730 [Toxoplasma gondii ME49]  ali follow..  13  100...LRDTAPRILVVAGPSGVGKGTLVKRIFAKWPQA---SHTSRQPRPGETHG--KEYFFCSREEFEKLKKEGHFVESAEF-CYGTSF----AAVDNVRRGERICLLE----------------------------------------------------IDMAGVLQIQSTPLAQEANFVFIQPPSIEELKARLRGRRTENEEIAKRLAAAQRELALKETHFDFYLTNDNLEDAWQKLEAQLVQWYGPVFKKA................... 298
25 -11.500IDP02287 gene: adk; adenylate kinase [Francisella tularensis subsp. tularensis SCHU S4] FTT1161 [Francisella tularensis subsp. tularensis SCHU S4]  ali follow..  13  3...........IILLGAPGAGKGTQAKIIEQKYNIAHISTMIRETIKSGSALGQELKKVLDAGELVSDEFIIKIVKDRIS---------------KNDCNNG--FLLDGV-------RTIPQAQELDKLGVNIDYIVEVDVADNLLIERITGRRIHPASG------RTYHTKFNPPKVADKDDVTGEPLITRTDDNEDTVKQRAQTAKLIDFYRNTNTKIPKYIKINGDQAVEKVSQDIFDQLNK............................ 217
26 -11.400IDP04500 gene: adk; adenylate kinase [Vibrio cholerae O1 biovar eltor str. N16961] VC0986 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  13  3...........IILLGAPGAGKGTQAQFIMEKFGIPQISTMLRAAIKAGTELGKQAKAVIDAGQLVSDDIILGLIKERIA---------------QADCEKG--FLLDGF-------RTIPQADGLKEMGINVDYVIEFDVADDVIVERMAGRRAHLPSG------RTYHVVYNPPKVEGKDDVTGEDLVIREDDKEETVRARTQTAPLIEYYGKEAAAGKTQYLFDGTKQVSEVSADIAKAL.............................. 213
27 -11.300IDP04640 gene: cmk; cytidylate kinase [Francisella tularensis subsp. tularensis SCHU S4] FTT0559c [Francisella tularensis subsp. tularensis SCHU S4]  ali follow..  11  2......NNSKIITIDGPSGVGKGTLAKALAKYYENEDDVCKTLRNLDISFKIEDDLVKAFLSNQDVTKDIRTEQIGMLASKVAAYPTVRAILLNKQREFATEQGLVADGRDMGTVVF--------------------------------------------------------PQAQYKFFLDASTEITAKRRYDELKTKGQKPNFEKILADIKQLRPANDAIIVDTSQLFIKEVFDSVIKKIT............................. 220
28 -11.200IDP05295 gene: cmk; cytidylate kinase [Clostridium difficile 630] CD1816 [Peptoclostridium difficile 630]  ali follow..  13  2.......GNLVIAVDGPAGAGKSTIAKIVAKKLNDTGAMYRAVTDVNNEKEVIQIAENIYLDKEVINEEIRTIEVSNNVSNVAKIKEVRQLMVEVQRKIGMKNSVILDGRDIGSYVF--------------------------------------------------------PDADYKFFLVATPEERGNRRYKELCNKGYNTTLEEVIEDIIRLVKANDALEIDTTGKTIEEVVEEVVSKIN............................. 215
29 -11.200IDP00480 gene: adk; adenylate kinase YPO3118 [Yersinia pestis CO92]  ali follow..  13  3...........IILLGAPGAGKGTQAQFIMEKYGIPQISTMLRAAVKAGSELGLKAKEIMDAGKLVTDELVIALVKERIT---------------QEDCRDG--FLLDGF-------RTIPQADAMKEAGIKVDYVLEFDVPDELIVERIVGRRVHAASG------RVYHVKFNPPKVEDKDDVTGEELTIRKDDQEATVRKRQQTAPLVSYYHKEADAGNTQYFLDGTRNVAEVSAELATILG............................. 214
30 -11.000IDP91820 gene: adk; adenylate kinase [Escherichia coli str. K-12 substr. MG1655] b0474 [Escherichia coli str. K-12 substr. MG1655]  ali follow..  12  3...........IILLGAPGAGKGTQAQFIMEKYGIPQISTMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIA---------------QEDCRNG--FLLDGF-------RTIPQADAMKEAGINVDYVLEFDVPDELIVDRIVGRRVHAPSG------RVYHVKFNPPKVEGKDDVTGEELTTRKDDQEETVRKVEYHQMTAPLIGYYSKENTKYAKVDGTKPVAEVRADLEKILG............................. 214
31 -10.800IDP04177 shikimate kinase [Vibrio cholerae O1 biovar El Tor str. N16961] VC2629 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  16  7...........IFLVGPMGAGKSTIGRHLAQQLHMEFIDSDTVIEERTGADIAWVFDVE-------------------------EGFRKREEAVINDLTEQQGIVLA----------TGGGSVISKENRNRLSAR-----------------------------------------GIVVYLETTIEKQLARTNRDKKR-CPREVLEQLAEDRNPLYEEIADITVRTDDQSAKVVANQIVKMLEEHI.......................... 173
32 -10.200IDP90625 gene: coaA; pantothenate kinase [Yersinia pestis CO92] YPO3758 [Yersinia pestis CO92]  ali follow..  11  80LGTDGQRIPYVIGIAGSVAVGKSTTARLLQALLSRWHRSVELITTDGFLHPNKVLNERGLMKKKGFPESYDMHNLVKFVSEVVYSHLIYDVVPDGNKVIKQPDILILE-----------------------------------------VLQSGMDYPHDPHHVFVSDF-------DFSIYVDAPEDLLQSWY--NRFLKFRQGAFSNPDSYFHNYAKLPETEAIKIATQLWNEINGLTRERASLIMTKSANHAVESV............... 312
33 -10.100IDP06058 gene: coaE; dephospho-CoA kinase [Helicobacter pylori J99] NP_223488 [Helicobacter pylori J99]  ali follow..  12  5.........NAIALTGGIGTGKSTTLKILESQADKIAHQLLQEHRLEIAQRFGSDIKDILNRKKLGAIVFQNANELKWLEDFLHPLIRECMLKKACELEKNHQAYFLD----IPLFFEVGGKKRYP--------------------------------------------------SRVVLIYAPRALQIERL-LERDKLKEAEILQRLACQMDIEQKRAMSDYIIDNSSSLKDLNKQVERFLKTLL.......................... 196
34 -9.890IDP02159 gene: aroK; shikimate kinase [Coxiella burnetii RSA 493] CBU_1892 [Coxiella burnetii RSA 493]  ali follow..  11  8...........IYLIGLMGAGKTSVGSQLAKLTKRILYDSDKEIEKRTGADIAWIFEME-------------------------AGFRRREREMIEALCKLDNIILA----------TGGGVVLDEKNRQQISET-----------------------------------------GVVIYLTASIDTQLKRIGQKGEM-NSKEKLQQLNEIRKPLYQAMADLVYPTDDLNPRQLATQILVDIKQTYSD........................ 178
35 -9.790IDP02271 gene: aroK; shikimate kinase I [Francisella tularensis subsp. tularensis SCHU S4] FTT1155c [Francisella tularensis subsp. tularensis SCHU S4]  ali follow..  12  7...........IFLIGPVGAGKSTIGKQLAKQLKLEFIDSDDVIEKKCGVDINWIFDLEGEEGFRKREREVIAEILAEKQNIV---------------LATGGGAILDPETRSLLSSRG----------------------------------------------------------KVVYLEATIEQQLERTSKDTKR-DKRPVLEQLMAEREPLYRSIADVVVETNGATVKNIVNKISTFLVE............................ 172
36 -9.520IDP01835 gene: coaE; dephospho-CoA kinase [Coxiella burnetii RSA 493] CBU_0152 [Coxiella burnetii RSA 493]  ali follow..  13  2.........LRIGLTGGIGSGKST----VANYFAELGAPVI------------------------DADQIAHEITKPDQAAFKQIINHF------------GNAVLLNRTKLRELIFENPDDRQWLENLLH-----------IIAKMKTQLKKIKAPYCILAIPLLAEASQSVDFIDRILVVDAPETLQIQRT-KSRDQLSDQQIQLILQSQSPREKRLAIADDVIVNDQTIPILRKAVFQLHCKYLQIAQT..................... 199
37 -9.500IDP00781 gene: est; carboxylesterase SACOL0845 [Staphylococcus aureus subsp. aureus COL]  ali follow..  11  12....EEGKRAVLLLHGF--TGNSSDVRQLGRFLQKKGYTSYAPQYEGHAAPPDEILKSSPFVWFKDALDGYDYLVEQGYDEIVVAG------------LSLGGDFLSLNRDVKGIVTMCAPMGGKLEYARNFKKYEGKDQETIDNEMDHFKPTETLKELSEALDTIKEQVDEVLDPILVIQAENDNMIDPQSANY---------IYDHVDSDDKNIKWYSESGHVITIDKEKEQVFEDIYQFLESLDWS........................ 245
38 -9.290IDP91206 shikimate kinase [Bacteroides thetaiotaomicron VPI-5482] BT_3393 [Bacteroides thetaiotaomicron VPI-5482]  ali follow..  15  4...........IFLTGYMGAGKTTLGKAFARKLNVPFIDLDWYIEERFHKTVGELFTER-------------------------AGFRELERNMLHEVAEFENVVIS----------TGGGAPCFYDNMEFMNRT-----------------------------------------GKTVFLNVHPDVLFRRLRIAKQQ-EDDELMDFIIQALEKRAPTQAQYIFNADELEDRWQIESSVQRLQELLE......................... 174
39 -9.220IDP00325 gene: coaE; dephospho-CoA kinase Cj1530 [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]  ali follow..  11  3.........NAFFVTASIACGKSTFIEIANSLADKIAHKILDENALELEKIFSPFSLKNLLKKEKKIDRKNNKEAKKILENFTHPKIRAKILEQMQILDKENKAFFVE----IPLFFESGAYEN----------------------------------------------------GKVIVIYTPKELSLKRI-MQRDKLSLEAAKARLDSQIDIEEKLKKADFIIKNTNSYADFRQECVKVIQEISKG........................ 199
40 -9.200IDP90167 Shikimate kinase CD1838 [Peptoclostridium difficile 630]  ali follow..  11  1MINKTKEK---LILIGMPGSGKTTIGKLLAKEYNCSFCDMDDYIIQISQKSIAELFSE--------------------------DIFRNYETQACRELSISDKTVIS----------TGGGVIKKDVNMEILKET-----------------------------------------GIIIFIDRPIQKILEDINIKNGKDRLYNLYNERINLYKKFSD-----IEILNDKSLNNAVYNITNAVSENFKFDFKEK................... 177
41 -9.160IDP00856 gene: aroL; shikimate kinase II STM0388 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  11  5...........LYLVGPRGCGKTTIGMALAQATGFRFADTDRWLQSHVQMSVADIVEK-----------EGWGGFRARETAALEAVSAPSTV------VATGGGIILTEYNRRYMHRVG----------------------------------------------------------VVIYLCAPVSTLVNRLEAEPEADLRREVLEQRDALYRETAH-----YIIDATKAPAQVVSEIIAALPPSTQRLQGDVYT................. 181
42 -9.100IDP06310 gene: coaE; dephospho-CoA kinase [Streptococcus pneumoniae TIGR4] NP_345452 [Streptococcus pneumoniae TIGR4]  ali follow..  11  3.........KIIGITGGIASGKST----VTNFLRQQGFQVV-----------ADAVVHQLQKPGGRLFEALVQHFGQEIILENGELNRPLLASLIFSNPDEREWSIQGEIIREELATLREQLAQTEEIFFMDIPLLFEQDYSDW--------------------------------AETWLVYVDRDAQVERL-MKRDQLSKDEAESRLAAQWPLEKKKDLASQVLDNNGNQNQLLNQVHILLEGGRQDDRD..................... 201
43 -9.010IDP00273 gene: N/A; NS3 RNA Helicase AF180817_1476-2094 [Dengue virus 1]  ali follow..  179IEDEVFRKRNLTIMDLHPGSGKTRRYAIVREAIKRKLR--TLILAPTR--VVASEMAEALKGVPRYQTTAVKSEHTGKEIVDLMCHATFTMRLLSPVRVPNYNMIIMDEAPASIAARGYISTRVGMGEAAAIFMTATPPGSVEAFPQSNAIIQDEERDIPERSWNSGYDWITDFPGKTVWFVPSIKSGNDIANCLRKNGKRVIQLSRKTFDTEYQKTKNNDWDYVVTTDISEMGANFRADRVID............................. 425

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Rychlewski L, Zhang B, Godzik A. Fold prediction by a hierarchy of sequence, threading, and modeling methods. Protein Sci. 1998 Jun;7(6):1431-40.