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Query: IDP92246 RecName: Full=Vancomycin B-type resistance protein vanW EF_2296 [Enterococcus faecalis], from CSGID

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MNRKRLTQRFPFLLPMRQAQRKICFYAGMRFDGCCYAQTIGEKTLPYLLFETDCALYNHNTGFDMIYQENKVFNLKLAAKTLNGLLIKPGETFSFWRLVRHADKDTPYKDGLTVANGKLTTMSGGGMCQMSNLLFWVFLHTPLTIIQRSGHVVKEFPEPNSDEIKGVDATISEGWIDLKVRNDTDCTYQIWVTLDDEKIIGQVFADKQPQALYKIANGSIQYVRESGGIYEYAKVERMQVALGTGEIIDCKLLYTNKCKICYPLPESVDIQEANQLast
1 -101.000IDP92246 RecName: Full=Vancomycin B-type resistance protein vanW EF_2296 [Enterococcus faecalis]  ali  100  1MNRKRLTQRFPFLLPMRQAQRKICFYAGMRFDGCCYAQTIGEKTLPYLLFETDCALYNHNTGFDMIYQENKVFNLKLAAKTLNGLLIKPGETFSFWRLVRHADKDTPYKDGLTVANGKLTTMSGGGMCQMSNLLFWVFLHTPLTIIQRSGHVVKEFPEPNSDEIKGVDATISEGWIDLKVRNDTDCTYQIWVTLDDEKIIGQVFADKQPQALYKIANGSIQYVRESGGIYEYAKVERMQVALGTGEIIDCKLLYTNKCKICYPLPESVDIQEANQ 275
2 -82.800IDP92247 gene: vanWG; VanWG [Enterococcus faecalis] ABA71730 [Enterococcus faecalis]  ali follow..  51  9.QRKRLTQLFPFLLPLRKWQRKKYFYFKMKFDGNRYAKKTSEKLLPNTVFETSSLMLNENSGFDMKYQINKVHNLKLAAKTINKVIIEPKETFSFWQLVRWADRHEKYKDGLNLVNGKIVGSYGGGLCQLSNMLFWLFLHTPLVIVERHGHAVESFPSTTEDLPCGTDATINEGWLDLKLRNDTDNTFQIEISFDDNFMYGRILSQSSVNIEYTVFNSSVSYFKREEKVYQIASVCRTEKDKMTGSQTEKE-LYVNQCEIAYKLPDDVKIEER.. 279
3 -72.700IDP05533 hypothetical protein CD2149 [Clostridium difficile 630] CD2149 [Peptoclostridium difficile 630]  ali follow..  18  173...SYTDSVVGREFDLAANKESIYNMIKEHKTLELKVNLQKPDITTEQVKTVNSVIGQYSTTYS-QAVEGRSYNVGLSARKTSDVLLMPGEEFSYNKLTGPSNKANGYKDAPVIVYGKLEQSAGGGVCQTSSTVYNAALLSGMEITQVTNHSSAS-----TYVPKGRDATVSDGGLNLKFKNPYKHPVYIKNYAGGGSVSSVIYGNSGDKPNISIEVK--------QTGQNKYSTYR-IFKDSNGKVIKKEHISNSSYKELKK............ 419
4 -6.140IDP91270 acetyltransf2, N-acetyltransferase [Bacillus anthracis str. Sterne] NT05BA3459 [Bacillus anthracis str. Sterne]  ali follow..  12  1............................................MTDFQKQFFARLNIEEKQKVSFEDLSNIMYAMAQTVPFENLNVLEKNFKEI---------------SQENLKEKILVNNRGGLCYELNPTMYYFLKD-----------------------AGFDVYLVSGTVYNAANSIWAGHIATILKHHNELYLIEVFGSYLPLAPVPFSGEVVQ...................................................... 143
5 -5.600IDP01237 Glucose-specific phosphotransferase enzyme IIA component (PTS system glucose-specific EIIA component) (EIIA-Glc) (EIII-Glc) BA_5563 [Bacillus anthracis str. Ames]  ali follow..  13  2..............................................................FKKLFGLGSKTNEETIVAPLTGAVKNPDPVFA-GRMMGD-----GV--AIDPTEGVVVSPVDGEIVQLFHTKHEILIHVGLETVKMEGEGFEAHVSEGQAVKAG-DKLISF---DLELIREKAKSTITPIVITNTDAAESI........................................................................ 144
6 -5.390IDP00719 PTS system, IIA component SACOL1457 [Staphylococcus aureus subsp. aureus COL]  ali follow..  11  9....................................................................GKEVQKDIAIYAPLTGEFVKPDPVFA-QKMMGE-----GF--GINPTEGEVVSPIAGRVDNVFPTKHELLVHIGLDTVQLDGEGFEVLVSSGDEVNVGDPLV----RFNLEYINNNAKSVISPIIITNTDQAASI........................................................................ 145
7 -5.310IDP02114 gene: hslV; ATP-dependent protease peptidase subunit [Francisella tularensis subsp. tularensis SCHU S4] FTT0688c [Francisella tularensis subsp. tularensis SCHU S4]  ali follow..  14  10............................................................................LCVRKGDKVVIGGDGQATLGHTIAKENIIKVRK----LNGGKVLTGFAGSTADAFTLFYQGNLERAAVEMVREWRLDRMLSDKNDIISIGSGSTYARSAATALVENTDLSAEEI..................................................................................... 154
8 -5.130IDP00479 gene: ribB; 3,4-dihydroxy-2-butanone 4-phosphate synthase YPO0658 [Yersinia pestis CO92]  ali follow..  66......................VCLCITDERRQQLDLPMMVTHNSSQFQTAFTVTIEAAEGVTTGVSAADRLTTIRKAIAAKPADLNRPGHVFPLRGQPGGVLSRRGHTEASIDLATLAGYKPAGVLCELTNDDGSMAHAPEVIAFAK-LHDMPV........................................................................................................................ 199
9 -5.070IDP02453 gene: maA; maltose O-acetyltransferase [Bacillus anthracis str. `Ames Ancestor`] GBAA3402 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  12  38....................................AVETGDERRFTLLNQLLGSSADGKAQINPDFRCDYGYNIHVGKSFFDHCMFAPGHIYTATHPLHPVERNSGKEYGKPVKIGNNV--VGGGAIINPGVSINAVIASGAVVTK-----------PNNVVVGGNPAKVIKTIEE.................................................................................................. 187
10 -5.050IDP02610 hypothetical protein Cj1417c [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj1417c [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]  ali follow..  15  48.........................................................................DFSYYKHLIKAVILSGGNDLSFYSPNVLSKKRDLYEKQVIEICLEEKIPL--GICQMIAHYFNSHISPCENHIGKHEHNFAIEKLGEDLVELCLDNTI........................................................................................................ 162

FFAS is supported by the NIH grant R01-GM087218-01
1 4 0 1 8 1   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Wooley JC, Godzik A. Probing metagenomics by rapid cluster analysis of very large datasets. PLoS ONE. 2008;3(10):e3375. Epub 2008 Oct 10.