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Query: IDP92247 gene: vanWG; VanWG [Enterococcus faecalis] ABA71730 [Enterococcus faecalis], from CSGID

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MIEVYKLTQRKRLTQLFPFLLPLRKWQRKKYFYFKMKFDGNRYAKKTSEKLLPNTVFETSSLMLNENSGFDMKYQINKVHNLKLAAKTINKVIIEPKETFSFWQLVRWADRHEKYKDGLNLVNGKIVGSYGGGLCQLSNMLFWLFLHTPLVIVERHGHAVESFPSTTEDLPCGTDATINEGWLDLKLRNDTDNTFQIEISFDDNFMYGRILSQSSVNIEYTVFNSSVSYFKREEKVYQIASVCRTEKDKMTGSQTEKELYVNQCEIAYKLPDDVKIEERGVLast
1 -101.000IDP92247 gene: vanWG; VanWG [Enterococcus faecalis] ABA71730 [Enterococcus faecalis]  ali  100  1MIEVYKLTQRKRLTQLFPFLLPLRKWQRKKYFYFKMKFDGNRYAKKTSEKLLPNTVFETSSLMLNENSGFDMKYQINKVHNLKLAAKTINKVIIEPKETFSFWQLVRWADRHEKYKDGLNLVNGKIVGSYGGGLCQLSNMLFWLFLHTPLVIVERHGHAVESFPSTTEDLPCGTDATINEGWLDLKLRNDTDNTFQIEISFDDNFMYGRILSQSSVNIEYTVFNSSVSYFKREEKVYQIASVCRTEKDKMTGSQTEKELYVNQCEIAYKLPDDVKIEERGV 281
2 -82.800IDP92246 RecName: Full=Vancomycin B-type resistance protein vanW EF_2296 [Enterococcus faecalis]  ali follow..  51  2........NRKRLTQRFPFLLPMRQAQRKICFYAGMRFDGCCYAQTIGEKTLPYLLFETDCALYNHNTGFDMIYQENKVFNLKLAAKTLNGLLIKPGETFSFWRLVRHADKDTPYKDGLTVANGKLTTMSGGGMCQMSNLLFWVFLHTPLTIIQRSGHVVKEFPEPNSDEIKGVDATISEGWIDLKVRNDTDCTYQIWVTLDDEKIIGQVFADKQPQALYKIANGSIQYVRESGGIYEYAKVERMQVALGTGEIIDCKLYTNKCKICYPLPESVDIQEA.. 273
3 -66.800IDP05533 hypothetical protein CD2149 [Clostridium difficile 630] CD2149 [Peptoclostridium difficile 630]  ali follow..  20  156.INVKMKNASISVDSVVGREFDLAANKESIYNMIKNKEHKT--LELKVNLQKPDITTEQVKTVIGQYSTTYSQAVEGRSYNVGLSARKTSDVLLMPGEEFSYNKLTGPSNKANGYKDAPVIVYGKLEQSAGGGVCQTSSTVYNAALLSGMEITQVTNHSSAS-----TYVPKGRDATVSDGGLNLKFKNPYKHPVYIKNYAGGGSVSSVIYGNSGDKPNISI-------------------------EVKQTGQNKYSTYR---IFKDSNGKVIKKE.... 407
4 -5.760IDP91270 acetyltransf2, N-acetyltransferase [Bacillus anthracis str. Sterne] NT05BA3459 [Bacillus anthracis str. Sterne]  ali follow..  10  1...................................................MTDFQKQFFARLNIEEKQKVSFEDLSNIMYAMAQTVPFENLNVLEKNFKEISQE----------------LKEKILVNNRGGLCYELNPTMYYFLKD-----------------------AGFDVYLVSGTVYNAANSIWAGHIATILKHHNELYLIEVFGSYLPLAPVPFSGEVVQSVTGDYRIRKEMT........................................ 156
5 -5.620IDP04277 PTS system, glucose-specific IIABC component [Bacillus anthracis str. Sterne] BAS3960 [Bacillus anthracis str. Sterne]  ali follow..  10  454IASLDACITRLRVQVNEQKNVNKDRLKELGAAGVLEVGNNIQAIFGPKSDTLKSQIHDIMSGRTPHVEKEEPVKVEEALQKVDANESPIEGKILPPDQVFS-GKMMGD-----GF--AIEPTEGTVVSPVNGEIVNVFPTKHEILIHFGIDTVKLNGEGFEALVAQGDKVKQG-QPLLK---VDLAFVKENAPSIITPIVFTNLQQGQQVELKKDGNVK.............................................................. 677
6 -5.620IDP01237 Glucose-specific phosphotransferase enzyme IIA component (PTS system glucose-specific EIIA component) (EIIA-Glc) (EIII-Glc) BA_5563 [Bacillus anthracis str. Ames]  ali follow..  16  10.............................................................................SKTNEETIVAPLTGAVKNPDPVFA-GRMMGD-----GV--AIDPTEGVVVSPVDGEIVQLFHTKHEILIHVGLETVKMEGEGFEAHVSEGQAVKAG-DKLISF---DLELIREKAKSTITPIVITNTDAAESIKTTVGVTAT.............................................................. 153
7 -5.500IDP00719 PTS system, IIA component SACOL1457 [Staphylococcus aureus subsp. aureus COL]  ali follow..  14  9...........................................................................GKEVQKDIAIYAPLTGEFVKPDPVFA-QKMMGE-----GF--GINPTEGEVVSPIAGRVDNVFPTKHELLVHIGLDTVQLDGEGFEVLVSSGDEVNVG-DPLVRF---NLEYINNNAKSVISPIIITNTDQAASINIYDENAVI.............................................................. 154
8 -5.240IDP90143 bifunctional IL-1-beta-inhibitor/prevents febrile response in VAC-mouse intranasal model [Monkeypox virus] MPXV_ZAI1979_005_189 [Monkeypox virus]  ali follow..  10  42...............................................................................EPVILPCPQINTLS-YNILDILWEKRGADNDRIIQIDNGSNMLILNPTQSDSG-ICITTNETYCDMMSLNLTIVSVSESNIDLISYPQI-VNERSTGEMVCPNINAFISSNVNADII-LKQRTPGIITIEDVRKNDAGY............................................................... 191
9 -5.190IDP02610 hypothetical protein Cj1417c [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj1417c [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]  ali follow..  17  48................................................................................DFSYYKHLIKAVILSGGNDLSFYSPNVLSKKRDLYEKQVIEICLEEKIPL--GICQMIAHYFNSHISPCENSNSFHNFAIEKLGEDLVELCLAKDNTI....................................................................................................... 162
10 -5.130IDP02114 gene: hslV; ATP-dependent protease peptidase subunit [Francisella tularensis subsp. tularensis SCHU S4] FTT0688c [Francisella tularensis subsp. tularensis SCHU S4]  ali follow..  14  10...................................................................................LCVRKGDKVVIGGDGQATLGHTIAKENIIKVRK----LNGGKVLTGFAGSTADAFTLFYQGNLERAAVEMVREWRLDRMLSDKNDIISIGSGSTYARSAATALVENTDLSAEEI.................................................................................... 154

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Wooley JC, Godzik A. Probing metagenomics by rapid cluster analysis of very large datasets. PLoS ONE. 2008;3(10):e3375. Epub 2008 Oct 10.