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Query: IDP92553 gene: fadR; fatty acid metabolism transcriptional regulator FadR [Vibrio vulnificus CMCP6] VV1_2233 [Vibrio vulnificus CMCP6], from CSGID

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MVIKAKSPAGFAEKYIIESIWNGRFPPGSILPAERELSELIGVTRTTLREVLQRLARDGWLTIQHGKPTKVNQFMETSGLHILDTLMTLDVDNATNIVEDLLAARTNISPIFMRYAFKVNKENSERTIKTVIDSCEQLVAAESWDAFLSSSPYADKIQQNVKEDNEKDEAKRQEILIAKTFNFYDYMLFQRLAFHSGNQIYGLIFNGLKKLYDRVGSFYFSNPASRELALKFYRQLLLTCESGQREQLPALIRQYGIESAMIWNEMKKQLPTNFTEDDCLast
1 -96.300IDP92553 gene: fadR; fatty acid metabolism transcriptional regulator FadR [Vibrio vulnificus CMCP6] VV1_2233 [Vibrio vulnificus CMCP6]  ali  100  1MVIKAKSPAGFAEKYIIESIWNGRFPPGSILPAERELSELIGVTRTTLREVLQRLARDGWLTIQHGKPTKVNQFMETSGLHILDTLMTLDVDNATNIVEDLLAARTNISPIFMRYAFKVNKENSERTIKTVIDSCEQLVAAESWDAFLSSSPYADKIQQNVKEDNEKDEAKRQEILIAKTFNFYDYMLFQRLAFHSGNQIYGLIFNGLKKLYDRVGSFYFSNPASRELALKFYRQLLLTCESGQREQLPALIRQYGIESAMIWNEMKKQLPTNFTEDDC 279
2 -75.500IDP90975 hypothetical protein y0011 [Yersinia pestis KIM 10] y0011 [Yersinia pestis KIM10+]  ali follow..  18  8.QAAQRNLSYLLAEKIGQRILAGEYEAGSILPGEIELGEQFGVSRTAVREAVKMLAAKGMLLPRPRIGTRVMPQTNWNYLDQELLTWWMTKENFDQVMQHFLILRTSLEPQACYLAATHANEKQRELLASLVAEMRALHSNFN----------------------------------REQWIQVDTQFHKLIYEASGNPFLISFANLFSSVYYSYFRAI---TGDEVIKLQHHQNIVDTILAGDNQGALFACQVLLKTVD................... 229
3 -9.520IDP02193 arsenical restistance operon repressor [Francisella tularensis subsp. tularensis SCHU S4] FTT0868c [Francisella tularensis subsp. tularensis SCHU S4]  ali follow..  15  11.....KALGDETRIRILMVIYQHQL----------HLAHIFKLANSTLSKHLDILRRNGFIHKRK-QGRFHYFYFNSAYQQQLNWLFD-ILADDEIIQSDQKLVKQLIAQELEHLPEIHANENIL.......................................................................................................................................................... 121
4 -9.330IDP00219 probable deoR-family transcriptional regulatory protein YPO1938 [Yersinia pestis CO92]  ali follow..  11  2.......IPIERHQKILALVAE------RGVVSIAELTERLGVSHMTIRRDVQKLEEQGAVLSVSGGVRSTQRLAIEPSHQDKTMMFSRQKQAIGTSAALHIPRNSCIGTTTLALARQLEDRDDLLVVTNDFVIANFLIESSQCR...................................................................................................................................... 137
5 -9.320IDP00724 gene: arsR; arsenical resistance operon repressor SACOL1822 [Staphylococcus aureus subsp. aureus COL]  ali follow..  11  11.....KVLSDSSRLEILDLLSCGEL----------DLLAHFQFSQPTLSYHMKALVKTNLVTTRK-IGNKHLYQLNHNIFESVINNLSKVHTSNQRCICHNLK................................................................................................................................................................................ 100
6 -8.990IDP01519 hypothetical protein VC2149 VC2149 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  18  12..............YLALLVESLE-------PNVPKLIEKTGWPRRTIQDVIKAMPGIGIELNFVQDGRR................................................................................................................................................................................................................. 61
7 -8.970IDP93833 DNA-binding transcriptional repressor ArsR [Yersinia enterocolitica subsp. enterocolitica 8081] YP_001007538 [Yersinia enterocolitica subsp. enterocolitica 8081]  ali follow..  10  1MTLTSLQLFKNLSDETRLGIVLLLKEMGELCVCD--LCTALDESQPKISRHLAMLRESGLLLDRK-QGKWVHYRLSPHIPSWAAQVIEQAWLSQQDDVQAIAR................................................................................................................................................................................ 100
8 -8.950IDP01032 gene: yhgG; putative cytoplasmic protein STM3507 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  9  2..........ASLIQVRDLLALRG--------EATQISHTLHAPQPMIDAMLNQLEIMGKAVRIPEEPD.................................................................................................................................................................................................................. 54
9 -8.930IDP02176 gene: birA; birA bifunctional protein [Coxiella burnetii RSA 493] CBU_1002 [Coxiella burnetii RSA 493]  ali follow..  17  2......KNSQNHLAQIVALLNDRRFHPGT------AIGQALNISRTAVWKTVQKLKKYEIITADKSKGYRLER.............................................................................................................................................................................................................. 63
10 -8.890IDP90933 gene: birA; biotin--protein ligase [Yersinia pestis CO92] YPO3759 [Yersinia pestis CO92]  ali follow..  18  5..........RVPLRLVSILSDGFFHSGE------QLGETLGMSRAAINKHMQTIRDWGLVFTVPGKGYSLPT.............................................................................................................................................................................................................. 62
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Rychlewski L, Zhang B, Godzik A. Fold prediction by a hierarchy of sequence, threading, and modeling methods. Protein Sci. 1998 Jun;7(6):1431-40.