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Query: IDP92617 hypothetical protein SAUSA300_1868 [Staphylococcus aureus subsp. aureus USA300_FPR3757] SAUSA300_1868 [Staphylococcus aureus subsp. aureus USA300_FPR3757], from CSGID

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .
# Score Template Links and tools%idFirst MNYVERYIEQFLRATVRNNIKHYLLMLDEKMKNLDDYMRYLITKKEQLSKLIDSLMLTLENKYIDIAEAFQIQCAREINNQEIENIKSELNKVEAYYAQIETQIQQTSTEKIATEKTSYLINYMNAVALast
1 -75.400IDP92617 hypothetical protein SAUSA300_1868 [Staphylococcus aureus subsp. aureus USA300_FPR3757] SAUSA300_1868 [Staphylococcus aureus subsp. aureus USA300_FPR3757]  ali  100  1MNYVERYIEQFLRATVRNNIKHYLLMLDEKMKNLDDYMRYLITKKEQLSKLIDSLMLTLENKYIDIAEAFQIQCAREINNQEIENIKSELNKVEAYYAQIETQIQQTSTEKIATEKTSYLINYMNAVA 128
2 -5.380IDP90170 gene: CPXV011 CDS; CPXV011 protein AAM13458.1 [Cowpox virus (Brighton Red)]  ali follow..  12  566.............NIYHDIVKDVISGIREKFNLMKKVIYYIDHQPTYLNTIPKELVMEIFSN-MNLPEIRDLYMKYYATNPAIDYIGCDIDHSLQSMKSVQTQTHE...................... 658
3 -5.180IDP91685 gene: COL1A2; collagen alpha-2(I) chain precursor [Homo sapiens] NP_000080 [Homo sapiens]  ali follow..  11 1257MRLLANYASQNITYHCKNSIAYMDEETGNLKKAVDVELVAEGNSRFTYTVLVDGCSKK-TNEWGKTIIEYKTNKPSRLPFLDIAPLDIGGADQEFFVDIGPVCFK....................... 1366
4 -4.830IDP01721 putative outer membrane component of efflux system [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj1031 [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]  ali follow..  16  103................................NLRALESREKLSLLDKEQNKNYLALNAITLYFNTLSLEKI----LANQQKVSFLKSTFERLQKFYESIKAKYHLSLLELSQNELK........... 194
5 -4.790IDP90388 hypothetical protein [Chlamydia trachomatis D/UW-3/CX] CT_619 [Chlamydia trachomatis D/UW-3/CX]  ali follow..  11  652VNDLLSITNNFSTSSVYYNLSSYLVELAKEHEYIVRDINSCYRAEAFGEALLARVEALAQGHKVTDAQANSMRTQANLYLSFIRIIVEQLAVLDSLLRSLNYEVEKKDNN.................. 779
6 -4.660IDP00769 superantigen-like protein SACOL0472 [Staphylococcus aureus subsp. aureus COL]  ali follow..  20  242.......................LKELDFKLRKIEKNNLYGNVGSGKIVIKMGKYTFELHKKL------QENRMADVINSEQIKNIEVNLK..................................... 308
7 -4.650IDP06025 intraflagellar transport protein component IFT74/72, putative [Toxoplasma gondii ME49] EEB00214 [Toxoplasma gondii ME49]  ali follow..  10  70HRDLRREIGKFQAQIEVLSREA-LPMMRRRKRELEKEIEELQEKIAVINSAVTLGRENLRPEVVA--TAREVKEKNETKRALLDELFVSNWTRAARLSSLNAELNVLTDA.................. 179
8 -4.630IDP02487 gene: metE; 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [Bacillus anthracis str. `Ames Ancestor`] GBAA4218 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  10  255...................................................VSSIGLDFVHG-LNAISKYGFPADKTLAVGCIDGRNIWRADLDEVLTLFTTLQKQVQTKDLIVQPSCSL........ 326
9 -4.630IDP00141 gene: mshK; MSHA biogenesis protein MshK VC0401 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  10  37..........................................QKPSYPVPTLQSIVCAEGRSCYAIIEQRVVAQGDVVNGYRVATIHPDQVKLTRAGKEWRLALFTLDIKQ................. 105
10 -4.440IDP05348 putative multidrug efflux pump, outer membrane protein [Clostridium difficile 630] CD2408 [Peptoclostridium difficile 630]  ali follow..  338........................................TENGLVTLEDSKKALKKGLIDSYAQLLALED-----QITKKQLDLSEKQLKNTKLRYLGLITLTDYKKQVVSNEDAKNSYDTLI.... 419

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Robinson-Rechavi M, Godzik A. Structural Genomics of Thermotoga maritima Proteins Shows that Contact Order Is a Major Determinant of Protein Thermostability. Structure (Camb). 2005 Jun;13(6):857-60.