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Query: IDP92660 hypothetical protein CPE2277 [Clostridium perfringens str. 13] NP_563193 [Clostridium perfringens str. 13], from CSGID

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MIKLVDNRRNIFIFILIIGIISLVSLKVLAYEIPYMSINTDTTNYMINNGEEVSVTYVVQPQDLDPSYFGYSNRKQPNSREELNYATLDLNIPDGIQVKDIKFNQNGIIQNIDLNSMNLPSIQYQSVGSWKWSWGWYWSGYFKANSFEITIKYVGNNLSNKAVKEYVIGGNIKVGWESVGDLPNVRLSVNKKLSVNISVSDSRGNLGKPYNTLDDEKNGLNYEDLTQDNTLIGRGLVNFKVSGIAKNKNSDYYLKYRFIKKGQDDNTKWKSILLTTNSINADIDYDNPNNLTFRSYDVNHLPTLSGNSQWSDPNLVFKNPSSNIKYLPTTVASSKSQYGHLTSYIDSDGITQYKWVPNMTFYNNMYIGGDYKEAAKYWGYIKPKKTGWYILGILSDDGAKGTITADGKAYEFSKNGFYPHGVQYFSNRDANPIYLSEDEYYPISLEYFNWGGGGAFKVGYKYSEYRDYGYKYGEPDYMGEDGSAFTFYPSKSKEPGENADGIFTGGKDGIPFPSEEGSYYIDYRIVSIDKNNDSNQEVLKEGKYGYFNVENRFITNISIENGEKLIQGKKYDLKYTLKPKSIATKDISNISSDKLPDTIRLTDIKINGMLPPGIKFVSKSNSNLNENSNSYYIIEKSGDETPNGTNFTIKFSNDLVYTLDKSDMMYKAEIIEIPVKIQIGRIGEFIFNGNDNRITYKYSGKDMATITQYFPTININAISSSKIIKMGILDSAVKPSNIGNVNSISNVVNGIPSKVALSVKINSLGTIINVSLNSNYLRTGNRDITVSKYKIINGNVDFGKSETAEFSLNNNNISIKDKDKFKLEEGTDYLIVINITPDIPNGEQLKVEGSIEGASDMDKHYAILQPTEMPDVFLast
1 -262.000IDP92660 hypothetical protein CPE2277 [Clostridium perfringens str. 13] NP_563193 [Clostridium perfringens str. 13]  ali  100  1MIKLVDNRRNIFIFILIIGIISLVSLKVLAYEIPYMSINTDTTNYMINNGEEVSVTYVVQPQDLDPSYFGYSNRKQPNSREELNYATLDLNIPDGIQVKDIKFNQNGIIQNIDLNSMNLPSIQYQSVGSWKWSWGWYWSGYFKANSFEITIKYVGNNLSNKAVKEYVIGGNIKVGWESVGDLPNVRLSVNKKLSVNISVSDSRGNLGKPYNTLDDEKNGLNYEDLTQDNTLIGRGLVNFKVSGIAKNKNSDYYLKYRFIKKGQDDNTKWKSILLTTNSINADIDYDNPNNLTFRSYDVNHLPTLSGNSQWSDPNLVFKNPSSNIKYLPTTVASSKSQYGHLTSYIDSDGITQYKWVPNMTFYNNMYIGGDYKEAAKYWGYIKPKKTGWYILGILSDDGAKGTITADGKAYEFSKNGFYPHGVQYFSNRDANPIYLSEDEYYPISLEYFNWGGGGAFKVGYKYSEYRDYGYKYGEPDYMGEDGSAFTFYPSKSKEPGENADGIFTGGKDGIPFPSEEGSYYIDYRIVSIDKNNDSNQEVLKEGKYGYFNVENRFITNISIENGEKLIQGKKYDLKYTLKPKSIATKDISNISSDKLPDTIRLTDIKINGMLPPGIKFVSKSNSNLNENSNSYYIIEKSGDETPNGTNFTIKFSNDLVYTLDKSDMMYKAEIIEIPVKIQIGRIGEFIFNGNDNRITYKYSGKDMATITQYFPTININAISSSKIIKMGILDSAVKPSNIGNVNSISNVVNGIPSKVALSVKINSLGTIINVSLNSNYLRTGNRDITVSKYKIINGNVDFGKSETAEFSLNNNNISIKDKDKFKLEEGTDYLIVINITPDIPNGEQLKVEGSIEGASDMDKHYAILQPTEMPDVF 873
2 -27.700IDP92589 LCCL domain-containing protein [Toxoplasma gondii ME49] TGME49_058400 [Toxoplasma gondii ME49]  ali follow..  86.......................................................................................................................................................................................................................................................................................................................................YEDEPFADGVRGAYYNNPTFTGASAFRTDSALDLVFSGKGPSSNSFSVKSDCGVRMFLGDEPIIIDTPVSGDAISENP-----VPVIPTKEKTGM---MRTESVMMELVGGQKYRIRVEVYLNPNSATIRLLWRHGEGGEEVIPSSHYLT............................................................................................................................................................................................................................................................................................................................................................................................................ 242
3 -9.510IDP06509 gene: fms20; LPXTG family cell surface protein Fms20 [Enterococcus faecium DO] AFK60478 [Enterococcus faecium DO]  ali follow..  11  364................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................NDKMLQVGD--TIQYRIK---QKVNRLGVDLLAV------YDRFELIDNLPKEVNYVDAH-----------VESGTNKKFDVSGEVTYDKTKHQVKYAAKKNRMKYNGETYELVINVKVNELAN----QNSVAKNQGTSIINKVEKDTNIITVYFPKIPVKEVQQNGKDVNGRNDGKKGTPTAPLNAGSEVQYLVTQKWHTKGVDAA-QFSIQDPIEARLTYKEGSAQVIDKSKGKDITSEGTLTYDSNSRTLKWEDFLSNNLLDGREIQLIFTAKTPLQSEKNIDNQAVVDNVSNKTNVVTIGVDPNLPQV. 662
4 -9.410IDP05002 hypothetical protein lmo0086 [Listeria monocytogenes EGD-e] lmo0086 [Listeria monocytogenes EGD-e]  ali follow..  1M------KKNILV-VIIVSVLAISAI-VSAF------MRDDAYAIETEGFTYSPKGKVVDFSSEAKYNDTWINNE-KTITDKKEMKPINLARTLFLKDGRIQFLGKSVAVKSASDLIELPSKTSITESKGSYKAKSDSNKTLAQLPKGTVVKLAEGRYIILDNAYLKNKQGLNKKLPK-----NVLVSIDENKKVMLMGDKTIEELGGDDAYIEMENNHYHFDLKKEMLVSQTAKETDIDIRSIKVEIDDNAEKRSLKTAKETEKETTKDSTEKESEKQSNDASGQKSAQNNERSESKDDQTQDASGNNTNGSAN----NNTARSNGTGGSNSDTNGSQPGGTQNKPNEGDVNKANEIIKKLNEAENTNTFQVPIVDVNLTVKGQVAAAKL-KLTDSSKRL---NSLEAILYDSKNNIVKKEKLNSTKANQNFNLKYGETYQVVVQYKSASNKNQDTIFFRQTVEAKPVVLTPKVTERGEDYMKAELTATELYGHIDKLVLKIKENNSNV---ITSQKVTVDASQLTKDGQVEVKFNSLSSDKEYIIEMEELIVDGKNVTDDGWYFISSTLKAKPTIEGLNLSYSTDKGEFVASPVNLVDRDESITSIRYVAYLEDDYKVNGSNAKEYAYSVVDANQKKTAVKVGRTVDMNDGNISGNNGQSDYTFATPASNLTINYEVFDADNTLLFDNLTHPTLKLYKSDAQGMYSGNPVATVDLTKKSDITNLLEFDGLESEAYYYNLDDGAGIMVDELIGQSSVFRTTEDTTKVAINVKLSDAAVNLNDANLKIYEKKTNTLVKTVPLHGDFEKLMSDSG-NSYLFENLSINKEYLV.......................................... 855
5 -9.000IDP92699 Ser-Asp rich fibrinogen/bone sialoprotein-binding protein SdrE [Staphylococcus aureus subsp. aureus USA300_TCH1516] YP_001574462 [Staphylococcus aureus subsp. aureus USA300_TCH1516]  ali follow..  12  1MIKMISNRLNKFIY---VGTASLVGTTLI------FGLGNQEAKAAENTSTENAKQDDATTSDNKEVVSETENNSTTENNSTNPIKKETNTDSQPEAKKESTSSSTQKQQNNVTATTETKPQNIEKENVKPSTDKTATEDTSVILEEKKAPNNTNNDVTTKPSTSEPSTSEIQTKPTTPQESTNIENSQPQPTPSKVDNQVTDATNPKEPVNVSKEELKNNPEKLKEL..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 235
6 -8.980IDP92687 Ser-Asp rich fibrinogen/bone sialoprotein-binding protein SdrE [Staphylococcus aureus subsp. aureus str. Newman] YP_001331559 [Staphylococcus aureus subsp. aureus str. Newman]  ali follow..  12  1MIKMISNRLNKFIY---VGTASLVGTTLI------FGLGNQEAKAAENTSTENAKQDDATTSDNKEVVSETENNSTTENNSTNPIKKETNTDSQPEAKKESTSSSTQKQQNNVTATTETKPQNIEKENVKPSTDKTATEDTSVILEEKKAPNNTNNDVTTKPSTSEPSTSEIQTKPTTPQESTNIENSQPQPTPSKVDNQVTDATNPKEPVNVSKEELKNNPEKLKEL..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 235
7 -8.800IDP05452 collagen adhesion protein, C-terminal [Bacillus anthracis str. Sterne] BAS5207 [Bacillus anthracis str. Sterne]  ali follow..  10  1.MRMVK---------LSLLAYALAIINL-----SKYDKNTSPIKFTITESQTTSATTKVNAADEKETLEGAVFKIVNRDTNEDARTNLVTNSEGKLVVDDLRPGNYKLIETKAPTYYDVNVEPIEFTIEKGQQTLLPLTFKNSLTKGKVKLIKEDDVESSIALA----------------GAVFTLQDANGTEIAKDLKTDEHGVLGDYQFIETAAPEHYKLDQTPIKFTIERSQTKHVFVTATNSLTKGSVELIKVDDVEENTTLEGAV-VNKDGHDVRTDLTTDKNGRLPPGDYEFIETKAPTHYDLNETPIKFTVKKGQEKIASVTATNSLTKGAVELSKVDDIDGSTLK--DAVFKIVDMNGNDVRTDLTTNKDGKISVSRPGDYQFETKAPTHYD--LNQTPINFTVEKSQTATASVTAKNSLTKGAVELTEGAIFKIVRTDLTTDKDGKISVSDLRPGD-VETKAPTHYDLNQTPINFTVEKSQTATASVTATNSLTKGAVELTKVDDIDGATLEGAVFKIVDMNGNDVRTDLTTDKDGKISVSD--------------LRPGDYQFIETKAPKHYDLNQNPINFTVEKSQTATASVTATNSLTKGAVELMKVDDIDGTTLEGAIFKIVDSNGTTDKDGKISVSDLRPGDYQFIETGYDLNAKPIPFTITKGQSQVTSVTALNSLTTGSMELTKVDIDH-NGTLEGAIFNILDQ---------DGKVVREGLKTDGHGKLIVNDLKPGNYQLVETKAPEG-YQLDASPISFTIEKAQASPLQITVSNKKVESSSGGDNKPITPPNKEEKPGKETSEELENGNPKTQTNKQQDDRNTGKELPNTGHKNDSTQTVGIILLL-TKRKKYY 882
8 -8.660IDP06153 hypothetical protein jhp0534 [Helicobacter pylori J99] NP_223252 [Helicobacter pylori J99]  ali follow..  15  3KRKHVSKKV-LFVAVFTLGI-HIQNLKIGKLGISELYLK-------LNNKLSLEVERVDLSSFFHQKPTKKRLEVSDLIK-NIRYGIWAVSYFEKLKVKEIILDDK............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 113
9 -8.630IDP90415 gene: omcB; 60kDa Cysteine-Rich OMP [Chlamydia trachomatis D/UW-3/CX] CT_443 [Chlamydia trachomatis D/UW-3/CX]  ali follow..  110.........................................................................................................................................................................................................................................................................................................................................................................................................................................EITQAVPEYATVGSPYPIEIT--ATGKRDCVDV------------------IITQQLPCEAEFVRSDPATTPTADGKLVWKIDRLG-QGEKSKITVWVKPLKEGCCFTAATVCACPEIRSVTKCGQP-AICVKQEGPENACLRCPVVYKINIVNQG----------------TATARNVVVENPVPDGYAHSSGQRVLKRGRATNIATVSYCGGHKNTASVTTVINEPCVQVSIAGADWSYVCKPVEYVISV--SNPGDLVLRDSCNKVVWTVKELNPGESLQ---KVLVRAQTPGQFTNNVVVKSCSDCGTCTSCAEATTYWKGVA-ATHMCVVDTCDPVCVGENTVYRICVTNRGSAEDTNVSLMLELQPVSFSGPTKGTITGNTVVFDSLPRLGSKETVEFSVTLKAVSAGDARGEAILSSDTLTVPVSDTENTHI......... 552
10 -8.260IDP05371 conserved repeat domain protein [Bacillus anthracis str. Ames] BA_3601 [Bacillus anthracis str. Ames]  ali follow..  1137VMKSVNTL-DTLTYTILIGTVPATNIIF--------------QDPIPSGTAFVANSVTINGVVQQGADPMAGFPVPNIPVGQTATVTFQVTVTSIPSGGNIRNQSNITASFLINPANPPITTVTNSNFVVT--------------------------VNTAQLNIQKTSSVQQAALGETYTYSVVIRNNGTVTATNVSFIDP-TFVANSVTINGTPQPGFDPNVGFPLPNIAAGTSLTVTFQVT--------------VIAPSTRGAVLNTASAIATFLLNPLQPPVTTTNSSNTTVVTIPLPPPGEVTATKTVDVAAGAVGDVLTYTVLISNVGIIPVADVFFQDVIPEGTTFVEGSVTIGGVQQLGLNPEIGFTVTPLLIAGGSIEITFQVTITEIPDNEVILNDADVTFTSQPNPQEPPITETILTNLVVTATVGE-YDVLIF--NFGTVPATNVQYSDVLPSSIAFEPNSVTIDGVLQPGFNPNNGFPLPDINPGESVEVTFQVTVVSVPSNGTIVNTANVTGSFVLVPGEPPVIVTGPSNTTLTTVNRGQFNVIKQVNRAATLVGDVLTYTVQ---------------TNTGTVTANDVQFIDTISAGASFVPNS-------------VTINGALQPNLNPITGFGVGDIP----------ETVVVTFQATVTNIPASGTITNVANITGSCTLVPGEPPVVVTEPSNTTITSINRGRF-------------SVIKSVNKEATRLGDTLTYSVQVTNTGTVTATNVQFIDV--DLAVGDSVLITFAVNVIAVPPSSSIMNTARVTGDFELIPGEPPFTITNSSNTTVTPVNRGSLD-GETVTYTVRILNTGTADAMNVQFI-DVLSP.. 1973

FFAS is supported by the NIH grant R01-GM087218-01
1 3 9 2 2 3   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Slabinski L, Jaroszewski L, Rodrigues AP, Rychlewski L, Wilson IA, Lesley SA, Godzik A. The challenge of protein structure determination--lessons from structuralgenomics. Protein Sci. 2007 Nov;16(11):2472-82.