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Query: IDP92707 putative membrane protein [Staphylococcus aureus subsp. aureus USA300_FPR3757] ABD20650 [Staphylococcus aureus subsp. aureus USA300_FPR3757], from CSGID

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKALLIRNFKLRRYTLIIYVLLLTLYPFYIMLDSTKFFYLLQSFISPTILIIWILDAGHLFRLNRRLGGNDSYYFYMSLPVSKKQLLNANYITCIVLTLIGTLVISLYAYEADVIEPNSIYFSTAYAFVISNFLSIPIAFSQFTELRRVKVPYGIYVFTIIILVPFLFSIAIVLVNYFVLSQSSFPDLYSYILNIGFLIISIVILIVNYFKQLNKINTRKFKGGSRLast
1 -135.000IDP92707 putative membrane protein [Staphylococcus aureus subsp. aureus USA300_FPR3757] ABD20650 [Staphylococcus aureus subsp. aureus USA300_FPR3757]  ali  100  1MKALLIRNFKLRRYTLIIYVLLLTLYPFYIMLDSTKFFYLLQSFISPTILIIWILDAGHLFRLNRRLGGNDSYYFYMSLPVSKKQLLNANYITCIVLTLIGTLVISLYAYEADVIEPNSIYFSTAYAFVISNFLSIPIAFSQFTELRRVKVPYGIYVFTIIILVPFLFSIAIVLVNYFVLSQSSFPDLYSYILNIGFLIISIVILIVNYFKQLNKINTRKFKGGSR 226
2 -8.010IDP00178 putative ABC transporter, integral membrane protein YPO3405 [Yersinia pestis CO92]  ali follow..  7  9LQSIWIKEITRFARIWIQTLVPPVITMSLYFVGFDYMQFIVPGLIMMAVITNAYSNVAASFYGAKFQRSIEELL---VAPVPTHIVIIGYVGGGVARGICVGILVTIISLFFVPLHVHSWSMIALTLILTPTFVLTPLTYLGGVFYSLSLLP---FWQAVSKLNPIVYMISGF-----GFLGITDVSLAYTIGVLVVFIAVFYAWAWYLIERGTGLRT........ 256
3 -6.990IDP00408 gene: ccmB; heme exporter protein B YPO2735 [Yersinia pestis CO92]  ali follow..  13  2FISVLRRELKIA-NPLWFFLIVITLFPLGIGPEPQLLARIAPGIVWVAALLASLLSLERLFRDDFYDGSLEQLLL---LPTPLPLTVLGKVCAHWVVTGLPLLVLSPLVALLLSLDVNTAIAMGLTLLLGTPTLSFIGAIGVALTVGLRKGGVLLSLLVLPLYIPVL--IFATAAIDAASMAMPIDGYLAILGAMLAGSVTLAPFATAAALRVS............ 217
4 -6.310IDP06321 ABC transporter permease [Streptococcus pneumoniae TIGR4] NP_345398 [Streptococcus pneumoniae TIGR4]  ali follow..  14  5TNKLAVSNLIKNRKLYYPFALVTITYLFYSLTFNPKIAEIFGMFVVTLASAIIVLYANSFVMKNRS----KELGIYGMLGLEKRHLISMTFKELVVFGILTVGA------------GIGALFDKLIFAFLLKLMKLKVELVATFQMNV------LVVFGLIFLGLMFLNALRI-MNALQLSREKASGEKRGRFLPLQTILGSISLGIGYYLAL............. 218
5 -5.660IDP06035 NMD3 protein [Toxoplasma gondii ME49] XP_002370958 [Toxoplasma gondii ME49]  ali follow..  9  14LMAVCLKKVRLKKVEKIVDCQWLWTEPVKMKLTVQSDVLDGRAGLQQSLIIEGVIQNTQCDECKKSYTPHAGWTAMVQVRQHAEHKRTFLFLEQLVLKHRLAARLLNVVEKSDGLDFHFPSRQAALHFADFCQSRFPSVSRQAKQLISHDASSNIYYHK------YTISVTLAPVDLVYIHRKQAQAQLGGFTNLSLVAGAGIQLTDPFSGKVLNVSPEKY..... 239
6 -5.340IDP00186 putative membrane protein YPO0695 [Yersinia pestis CO92]  ali follow..  9  65...........................................................................................YIIFHFNVMGGGDVKLITVLLLALTAEQSLNFIIYTAVMGGVVMVVGLLINRVDIQKRGVPYAVAITAGFLSSVLI........................................................... 140
7 -4.920IDP02144 hypothetical protein FTT1136c [Francisella tularensis subsp. tularensis SCHU S4] FTT1136c [Francisella tularensis subsp. tularensis SCHU S4]  ali follow..  18  6...............................................FICIVFFLISGFALACSHDSGKHFSFNLDIKVNGDKKELYIKKY--------IENYVKEFNDKNSTNYQIERIEFSKSYQYENVETALVSLVEPSSTSSNKDKCKYHNH...................................................................... 108
8 -4.830IDP90411 hypothetical protein [Chlamydia trachomatis D/UW-3/CX] CT_647 [Chlamydia trachomatis D/UW-3/CX]  ali follow..  14  96.....................................................................ATAWVVRSRAVKDRKAFLEDNRLSWQEQTLGEKSTLFSFQKE---LQIDDEDIPVLLGLFDPKYTQIPIVFLSYWEMTKQVSSLGNEVWVV.................................................................. 183
9 -4.710IDP91685 gene: COL1A2; collagen alpha-2(I) chain precursor [Homo sapiens] NP_000080 [Homo sapiens]  ali follow..  6 1249.........................................EMATQLAFMRLLANYASQNITYHCKNSIAYMDEETGNLKKAVILQGSNDV-----LVAEGNSRFTYTVLVDGCSKKTNEWGKTIIEYKTNKPSRLPFLDIAPLDIGGADQEFF------VDIGPVCFK......................................................... 1366
10 -4.680IDP92689 hypothetical protein SAVC_09040 [Staphylococcus aureus subsp. aureus VC40] YP_005291395 [Staphylococcus aureus subsp. aureus VC40]  ali follow..  15  298..............................................................LNGLQQQSNYFRFQYFNPLKSER-----YYRNLDEQVLA-LITGEIGSMPDLKKPEDKPDSKQRSFEPHEKDDFTVVKKQEDNKKSASTAYS--------------WLAIV-------------------------SMMVVFSIMLFLFVKRNKKKNKNESQRR 419
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Slabinski L, Wooley J, Deacon AM, Lesley SA, Wilson IA, Godzik A. Genome pool strategy for structural coverage of protein families. Structure. 2008 Nov 12;16(11):1659-67.