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Query: IDP92710 peptidoglycan associated lipoprotein OprL precursor [Pseudomonas aeruginosa PAO1] NP_249664 [Pseudomonas aeruginosa PAO1], from CSGID

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MEMLKFGKFAALALAMAVAVGCSSKGGDASGEGANGGVDPNAGYGANSGAVDGSLSDEAALRAITTFYFEYDSSDLKPEAMRALDVHAKDLKGSGQRVVLEGHTDERGTREYNMALGERRAKAVQRYLVLQGVSPAQLELVSYGKERPVATGHDEQSWAQNRRVELKKLast
1 -84.600IDP92710 peptidoglycan associated lipoprotein OprL precursor [Pseudomonas aeruginosa PAO1] NP_249664 [Pseudomonas aeruginosa PAO1]  ali  100  1MEMLKFGKFAALALAMAVAVGCSSKGGDASGEGANGGVDPNAGYGANSGAVDGSLSDEAALRAITTFYFEYDSSDLKPEAMRALDVHAKDLKGSGQRVVLEGHTDERGTREYNMALGERRAKAVQRYLVLQGVSPAQLELVSYGKERPVATGHDEQSWAQNRRVELKK 168
2 -78.400IDP00403 gene: pal; peptidoglycan-associated outer membrane lipoprotein YPO1125 [Yersinia pestis CO92]  ali follow..  40  1MQLNKVLKGLMLALPVLAVAACSSNK-SANNDQSGMGAGTGTENGSNLSSEEQARLQMQELQKNNIVYFGFDKYDIGSDFAQMLDAHAAFLRSNPSKVVVEGHADERGTPEYNIALGERRASAVKMYLQGKGVSADQISIVSYGKEKPAVLGHDEAAFAKNRRAVL.. 166
3 -48.000IDP01448 outer membrane protein OmpA VC2213 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  26  160................TATLGIAYKFGGSEEPAPVVEQRPAEPAPVAAPVEKVAVTKTFTFQHLDSSTFATASAELKPATVQKLDKIVGYLNQYPQKVEVVGHTDSTGSEAYNQKLSERRAQAVAKALEAQGIDASRISAKGLGESSPIASNATAEGREKNRRVELV. 311
4 -47.700IDP92704 type VI secretion system OmpA/MotB [Acinetobacter baumannii ATCC 19606 = CIP 70.34] ZP_05827995 [Acinetobacter baumannii ATCC 19606 = CIP 70.34]  ali follow..  25  1...MRALVISTVVGAAVVLSGCQT-TGNNLGGVEYDKAALGTLIGAAAGYGISKSNANSQLIMPGSITFDTNKSNIKPNFYATLDKVAQTLAEDNKAILVTGYTDNTGNDSINIPLSQARAQSVKNYLAGKGVPSSRIDAQGYGSSNPIADNSTASGREQNRRVEIS. 212
5 -45.600IDP02586 gene: cadF; fibronectin-binding protein [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj1478c [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]  ali follow..  27  175......................KAVEEVADTRATPQAKCPVEPREGALLDENG------EKTISLEGHFGFDKTTINPTFQEKIKEIAKVLDENERDTILEGHTDNIGSRAYNQKLSERRAKSVANELEKYGVEKSRIKTVGYGQDNPRSSNDTKEGRADNRRVDAK. 315
6 -42.800IDP92703 putative type VI secretion protein [Escherichia coli 042] YP_006098805 [Escherichia coli 042]  ali follow..  31  436.......................................................QTPKTVRLNSLALFDAGKWTLKPGATKWLVNALVDIKAKAGLIVVSGHTDNTGDPLRNQALSLKRAEAVRDWMRDTGIPQSCFAVQGYGESRPVAPNDTAEGRARNRRVEIS. 549
7 -42.800CPX_00403_00493 Complex of IDP00403 (31...168) and IDP00493 (23..430) [Undefined organism]  ali follow..  39  1MQLNKVLKGLMLALPVLAVAACSSNKSANNDQSGMGAGT-GTENGSNLSSEEQARLQMQELQKNNIVYFGFDKYDIGSDFAQMLDAHAAFLRSNPSKVVVEGHADERGTPEYNIALGERRASAVKMYLQGKGVSADQISIVSYGKEKPAVLGHDEAAFAKNRRAVL.. 166
8 -42.300IDP92702 hypothetical protein YP_1360 [Yersinia pestis biovar Microtus str. 91001] NP_992725 [Yersinia pestis biovar Microtus str. 91001]  ali follow..  26  432....................................................PAPPAPKTVRLDSLSLFDVGKFTLNAGSTKMLVTALIDIKAKPGLIVVAGHTDITGDAQANHILSLKRAEALRDWMLSTDVSPTCFAVQGYGATRPIADNDTPDGRALNRRVEIS. 548
9 -42.100IDP02590 OmpA family protein [Francisella tularensis subsp. tularensis SCHU S4] FTT0831c [Francisella tularensis subsp. tularensis SCHU S4]  ali follow..  23  1..MKKLLKLCLMTSLITTLSACQTLDDKDKDSGPLTFPTLEPCTAELLQSNQSFIEQTGPDLIETNIKFDADSYTLNTQAKEVLDKLFAYLKLTDTNFTIKGYTDQKILTDYNIRLSKNRASSVEEYLVNKGLSSDGITIKALGYQDPIAPNDSTSSRAINQRVEIT. 179
10 -34.700IDP04332 putative OmpA family protein [Yersinia pestis CO92] YPO2723 [Yersinia pestis CO92]  ali follow..  27  152................................................................GDSMFMVGSDNVRPEMIDVIKRVAQEVHRVKGAILIVGHTDSMNKPGFNQVLSEKRAANVARYMEQAGIPTDKIRFEGKGETQPVSSNDDATGRSQNRRVEI.. 257
11 -33.500IDP92714 hypothetical protein VP1390 [Vibrio parahaemolyticus RIMD 2210633] NP_797769 [Vibrio parahaemolyticus RIMD 2210633]  ali follow..  18  571.......................QEDKLEQALKDARDQSGNQIDAILVNSSRGAGIK---------IEFAFNSREKELKDKQLAASLANVLEDEPNRVEIEGHACQVGTEKANMQVSAERAEYAKKLLMKEPVFDGRVSIAAFGESKPVYVPKQGEK-RQNRRVVIR. 719
12 -33.400IDP92701 gene: sciP; SciP protein [Salmonella enterica subsp. enterica serovar Typhimurium] CAC48213 [Salmonella enterica subsp. enterica serovar Typhimurium]  ali follow..  26  316.......................................................DQHSRVVFRGDAMFVPGQKTVSDAIRPVINKAAREIARVGGAVTVTGHTDSQHSAEFNLVLSEKRAAEVAALLTSGGVPAGRVHIVGKGDTVPVADNGSKAGRAKNRRVEI.. 430
13 -32.700IDP92712 hypothetical protein PA0078 [Pseudomonas aeruginosa PAO1] NP_248768 [Pseudomonas aeruginosa PAO1]  ali follow..  28  336................................................................GDELFASASASVRDEFQPLLLRIADALRKVKGQVLVTGHSDNRATLRYNWKLSQARAQEVADLLGATTGDAGRFTAEGRSDTEPVATNASAEGRARNRRVEI.. 441
14 -31.900IDP05056 gene: motB; chemotaxis protein [Clostridium difficile 630] CD0257 [Peptoclostridium difficile 630]  ali follow..  28  120................................................................DSILFDSGISELKVDSKATLNKVYDMIKMMKNKIVIEGHTDNVKSSTHNWDLSSSRAVSVVRYFVEEGMDPRLFSATGCGEYQPLVSNETAKGRAENRRVNI.. 226
15 -31.700IDP04712 putative OmpA-family membrane protein [Yersinia pestis CO92] YPO0514 [Yersinia pestis CO92]  ali follow..  21  394................................................................SDGAFRTGEATLSEEFKKNIERLGLALAPWPGDIEVIGHTDNKRSTSGNLKLSAARASVVADKLRESTTHQREISAIGRGESDPLADNATEEGRKRNRRVDI.. 505
16 -12.500IDP05554 hypothetical protein CD3669 [Clostridium difficile 630] CD3669 [Peptoclostridium difficile 630]  ali follow..  13  1MKNKKIMLVLSILSISIFAVGCTNAQNGSDSSKKETKSNTNVEQPKEENNTEKEVPNNKAKPTPKTIYSDVDKTDLIENKVDLNKIDENTLFEE----LQKLKVVPESAKDVSSDFTKSNLGSDAETLMLDSVNVEQIKITVDGS--NYESGHIV............. 183
17 -9.850IDP04197 putative lipoprotein [Clostridium perfringens ATCC 13124] CPF_2510 [Clostridium perfringens ATCC 13124]  ali follow..  11  1MK-KLLVPVLVIIIFALLFVGCTNSSNSSSDSSVEIINSNQQNSNSNNNNSSNNDTKKSDSNNASHKDNKDNNVSNNKNTNKKLDNKAEKLLKDIKEKAVKGE-----IIDYDFKLGDSIYDVIDKL......................................... 121
18 -9.540IDP92713 OmpA domain-containing protein [Pseudomonas putida KT2440] NP_745234 [Pseudomonas putida KT2440]  ali follow..  26  722.......................................................................DFQSLKNEGQHQLSAIASLNTPNIGKIIISGHADQLGDSQGNLQVSKQRAQTIRTYLVGKGVPAELVVAQGEGSRKPLVNCDMQKCLEPNRRVEIE. 826
19 -9.190IDP05588 putative lipoprotein [Bacillus anthracis str. Ames] BA_2883 [Bacillus anthracis str. Ames]  ali follow..  8  1MKYVKIALLCLTFTCIFALAACKGTDEKKETNPTSENSKNEQNTSSEGKKEPEVKSNTDSNSKDIVI--NHVKNLFELAKEGKVPNVPFAAHTGDIEEIEKGKADKTEQAGFNVSFGFNKGSQVFDVRSYKSITLQEIEKA-LGK--PNSVKGNGE............ 172
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. Discovering new genes with advanced homology detection. Trends Biotechnol. 2002 Aug;20(8):315-6.