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Query: IDP92775 hypothetical protein [Vibrio cholerae O1 biovar El Tor] AGG09416 [Vibrio cholerae O1 biovar El Tor], from CSGID

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MAENLVRYGASLAFDGRQALRQLRKYKETFNKVQHTILKNTQKLNNEMVQGEQRVQRAKENSIEKEKRRQESFNQWRKRQTRSANFAELKAHQQVELMKILASNKSAQEIKSTYTDTLLAFKLAKKREVAAEKQANRLRLESAKRTETRIKAIKGRANNLLGRAGGVAGSAISGLLGLGAATLGTVAVGAKDASDTRAEAVNAGMKVEDYQRFLFGARNATNLSRDEIMSSLQDVNDRRGEIMNLEIKDGEIKGVGELTDLLNFLVKNGQLALDEKAIKDFVLNSGNSAEFLEKVFKLLQTSGADTNTQTFLMESLASNSFRLMAQIDQNSTMYARSLEEMKTLRLGIDAANQTQVRDVGQTMSAMWNKLTYLPLEAFEAFAMAIKPETAASMNSVVNSIIKLARAMGDDLANVLERIVPWLEKLLASANENSLIDNFRSVGNILFDEIVKPALVKVGEVLLGVVATAIPEGMRTDQLQQMYEKYMLTEEERQALQLKKQQELDLNWQRIQPKQGGFNYLTPPPQAKTDTSSYVYPSAQQPVVVENNSTVKLEVDGKVLAQTVTKDQQFNEAMRKAAHQYGRGGYLast
1 -113.000IDP92775 hypothetical protein [Vibrio cholerae O1 biovar El Tor] AGG09416 [Vibrio cholerae O1 biovar El Tor]  ali  100  1MAENLVRYGASLAFDGRQALRQLRKYKETFNKVQHTILKNTQKLNNEMVQGEQRVQRAKENSIEKEKRRQESFNQWRKRQTRSANFAELKAHQQVELMKILASNKSAQEIKSTYTDTLLAFKLAKKREVAAEKQANRLRLESAKRTETRIKAIKGRANNLLGRAGGVAGSAISGLLGLGAATLGTVAVGAKDASDTRAEAVNAGMKVEDYQRFLFGARNATNLSRDEIMSSLQDVNDRRGEIMNLEIKDGEIKGVGELTDLLNFLVKNGQLALDEKAIKDFVLNSGNSAEFLEKVFKLLQTSGADTNTQTFLMESLASNSFRLMAQIDQNSTMYARSLEEMKTLRLGIDAANQTQVRDVGQTMSAMWNKLTYLPLEAFEAFAMAIKPETAASMNSVVNSIIKLARAMGDDLANVLERIVPWLEKLLASANENSLIDNFRSVGNILFDEIVKPALVKVGEVLLGVVATAIPEGMRTDQLQQMYEKYMLTEEERQALQLKKQQELDLNWQRIQPKQGGFNYLTPPPQAKTDTSSYVYPSAQQPVVVENNSTVKLEVDGKVLAQTVTKDQQFNEAMRKAAHQYGRGGY 585
2 -95.800IDP92749 hypothetical protein [Vibrio cholerae O1 biovar El Tor] AGG36655 [Vibrio cholerae O1 biovar El Tor]  ali follow..  95  1MAENLVRYGASLAFDGRQALRQLRKYKETFNKVQHTILKNTQKLNNEMVQGEQRVQKVKENTIEKEKRRQESFNQWRKKQMRSANFAELKAHQQVELMKIFASNKSAQEIKSTYTDTLLAFKLAKKREVAAEKQANRLRLESAKRTESRIKAIKARANNLLGRAGGVAGSAVSGLLGLGAAALGTVAVGAKDASDTRAEAVNAGMKVEDYQRFLFGARNATNLSRDEIMSSLQDVNDRRGEIMNLEIKDGEIKGVGELTDLLNFLVKNGQLALDEKTIKDFVLNSGNSAEFLEKVFKLLQTSGADTNTQTFLMESLASNSFRLMAQIDENSTMYQRSLEEMKNLRLGIDAANQTQVRDVGQTMSAMWNKLTYLPLEAFEAFAMAIKPETAASMNSIVNSIIKLARAMGDDLANVLERIVPWLEKLLASANENSLIDNFRSVGNILFDEIVKPALVKVGEVLLGVVATAIPEGMRTDQLQAMYEKYMLTDEERQALQLKKQKEMDLNWQRIQPKQGGFNYLTPPPQAKTDTSSYVYPSAQPAVVVENNSTVKLEVDGKVLAQTVTKDQQFNEAMRKAAWSVGR... 582
3 -62.300IDP95025 Set165a_026 [Vibrio cholerae O1 biovar El Tor]  ali follow..  17  1MSNVVEKFVYENIIDNRKAVRGMRKFEEMTRRAIKNTEKEEVKAATKKLTAEQKAAAQAEKLKAQEAAKLKKFNDWKLAQFRSAAFERLSLEQKMELKRVLSAKRSEEEIREEYRQTTAMMRRENQRRAAYERKQSKINNSGVKGGLTAGATGG-------GIVALAGNPAALAAAAVIGGGAMAINSGSQQFRDTKEGANLVGLDYNEFAQLANGLIAETIPDVSTAADKIKDLLDRSGEVMAETVFDSD-KGEGSILANLLLKQGVITGDKESLN----NFMNQSPDKFIESVVKATE--GLDAKQQAFVLEAFGSDFYNIIRGIQTNRQGFEAGKQNAVQFNTAEMTAATEFNKSVASMVSAISNADLN----IFKSFTEFLSPSSLAMFGKLGELLNSIATLLGYTLSGALNLLSPAINLVLDGLNLLLVGLTNVQRYITELTKYVSDGLTIATEWIKNSLRGMLHD----------ILNVLPDFAKKALGISTVEQTPTTPTTTTAPTTPKPYNMTSPTTYGGYSGYGTQNPTTTTNPTNTTATVNLVVDGNTLATAVVNSAVGQEGVKQIMHRSRP--Y 582
4 -9.330IDP91721 gene: MMRN2; multimerin-2 precursor [Homo sapiens] NP_079032 [Homo sapiens]  ali follow..  10  234...............DTFLQVHFSPIWRSFNQSLHSLTQAIRNLSLDVEANRQAISRVQDSAVARADFQELGAKFEAKVQENTQRVGQLRQDVEDRLHAQHFT---HRSISELQADVDTKLKRLHKAQEAPGTNGSLVLATPGAGARPEPDSLQARLGQLQRNLSELHMTTARREEELQYTLEDMRATLTRHVDEIKELYSESDETFDQISKVERQVEELQVNHTAILMEKSLIMEENKEEVERQ----------LELNLTLQHLQGG----HADLIKYVKDCNCQKLYLDLDVIREGQRDATRALEETQVSLDERRQLDGSSLQALQNAVDAVSLAVDAHKAEGERARAATSSQVQALDDEVGALKAAAAEARHEV-----RQLHSAFAALLEDALRHEAVLAALFGE................................................................................................................................................................................ 616
5 -8.380IDP95280 methyl-accepting chemotaxis protein [Acinetobacter baumannii ATCC 17978] YP_001085820 [Acinetobacter baumannii ATCC 17978]  ali follow..  11  276.....................................ITLRSVMDKQRVARLQEEYDRNQNAILRLLDEIADLADGDLRSYATVSEDFTGA-----ADSINFAIDQLRDLVSRIHETSQEVARYTQDTQSITNQLAEASEHQAQEIAGASTAMNEMAQSIDQVSANASAEVAQRSVQIASNGAQVVNRSIEGMDTIREQIQETSKRIKRLGESSQ--------EIGNIVSLINDIADQTNNAAIQASMAGE-AGRG-VADEVQRLA---------------------------------ERSASATKQIETLVKTIQTDTNEAVISMEQTTTEVVRGANLAKDAGIALDEKVSGDLAKLIASISDAAKLQSASASHIATTMVQEITSQTTTATFDTARSVSELAN-MAESLRESVT......................................................................................................................................................................... 619
6 -7.920IDP06536 gene: ezrA; septation ring formation regulator EzrA [Enterococcus faecium DO] AFK59814 [Enterococcus faecium DO]  ali follow..  8  1MGNNIIGIVIAIII-KKKNQDRLDALEKRKEELFDLPVIEEVDDVKKMHLVGQSQNTFREAELESQIFEVENLNESFRFLKGKKAVVEAEATMDQMEKQVTEIREGLKELRETEERNSLAVQQALDVYEELKEKVREDEHEYGPALFELQKQIKVIEKEFTQFVTLNTSGDPVEAREVLDKAEKHTYEVEALMKKIPPLYEELHTTFPE-RRIENSLANLEKTEVETVEFENRETADLIDSLYDILEREMEAQ---TIAEYIKHTTKNRQLLIELDHTSQSYTLNHNEIGRVRGFQTEVEEMERQNEQMIPQIRQHEIPYSEVRTFYKTVFKVLEDIEKQQVEIDDSLHELR-KGEKEAQEKIDTFEFKLRSLKRFVEKQRLPGLPNDYLEFFFVATDRIEELSVVLNEEVNRLVALCEEDLELLDKKTH........................................................................................................................................................... 497
7 -7.790IDP04225 gene: ipaB; IpaB, secreted by the Mxi-Spa secretion machinery, required for entry into epithelial cells [Shigella flexneri] CAC05803 [Shigella flexneri]  ali follow..  8  83IGNLIQILGEKSLTALTNKITAWKSQQQARQQKNLEFSDKINTLLSETEGLTRDYEKQINKLKNADSKIKDLENKINQIQTRLSELDPESPEKKKLSREEIQLTIKKDAAVKDRTLIEQKTLSIHSKLTDKSMQLEKEIDSFSAFSNTASAEQLSTQQKSLTGLASVTQLMATFIQLVGKNNEESLKNDLALFQSLQESRK-------------------------------TEMERKSDEYAAEVRKAEELN--GCVGKILGALLTIVSVVAA--AFSGGASLALAAVGLALMVTDAIVQAATGNSFMEQALNPIMKAV--IEPLIKLLSDAFTKMLEGL------VDSKKAKMIGSILGAIAGALVLVATVGKQAAAKLAENIGKIIGKTLTDIPKFLKNFSSQLDDLITNAVARLNKFLGAAGD.............................................................................................................................................................. 477
8 -7.710IDP91681 LAMC3_HUMAN [Homo sapiens]  ali follow..  9 1093QLQRLNKGARCAQAGSQKTCTQLADLEAVLESSEEEILHAAAILASEGPSQPTKWSHLATEARALARSHRDTATKIAATAWRALLASNTSYALLWNLLEGRVALETQRDLEDRYQEVQAAQKALRTAVAEVLPEAESVLATVQQVGADTAPYLALLASPGALPQKSRAEDLGLKAKALEKTVASWQHMATEAARTLQTAAQATLRQTEPLTKARSRLTAT---SASQLHQEARAALTQASSSVQAATVTVM-----GARTLLADLEGKLQFPRPKDQAALQRKADSVSDRLLADTRKKTKQAERMLGNAAPLSSSAKKKGREAEVLAKDSAKLAKALLRERKQAHRRASRLT-SQTQATLQQASQQVLASEARRQELEE--AERVGAGLSEMEQQIRESRISLEKDIET-----LSELLARLGSLDTHQAPAQALNETQWALERL--RLQLGSPGSLQRKLSLLEQESQQQELQIQGFESDLAEIRADKQNLEAILHS....................................................................................... 1578
9 -7.520IDP00181 putative membrane transport protein YPO0363 [Yersinia pestis CO92]  ali follow..  6  38VRQELKLAESNKTTPNQAEIVQALQGALSWLADAKESDIRAQQYQKAIDDFPKLTRELRQQLAQEGDKPLPVPSN--------LSTSDLEQQVLQVSSQLLELNRLSQQEQDRAREISESLGQLPQQQSEARRMLAEIGPRIQSQSNPSTP--------------------------VAQAQLTLLQAEAVARKAKVNELELSQLSANNRQELSRLQVELYKKREARVQAQLQSLRNNLNNQRQQAAEQA----------LERTELLAEQGGDLPESITQQLQRNRELSQALNQQVQRIDLISSQQRQAVAQTQQVRQALNTIREQAQ--GETLRAQVARLQQLDRDMAQLRVQRL-QYEDMLEKLQQQKTTLKQDDGTPLTPDQQRILDAQWRTQSELLNSLLSGYDTQILELTK......................................................................................................................................................................... 420
10 -7.450IDP01485 hemolysin secretion protein HylB VCA0220 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  9  228..................................................................................KDRMSSAAANLSLRTRLELDGNDELCDIGKSFNAFIDKVHHSIEEVAENSKELATMASSVSQRAHMTQSNCASQRDRT--------------------QVATAIHELGATVSEIASNAAMAADVAKQATLHSGEGKKVVGEVQNRIQTLVNELDNATQVVSSLATQINGI---SSTLDTIRSISEQTNLLALNAAIEAARAGEQG--RGFAVVADEVRRSAASTEEIQQVINRLQTESTRAVEAMEKGRSQSDVVVEFSAKANQSLTESQIDQINDQNIQVATATEEQSTVVEDINRNVED-INQLTTETSHVADEL-----SRASASLQRLSSQLDKLVGSF................................................................................................................................................................ 546
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Godzik A. Fragnostic: walking through protein structure space. Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W249-51.