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Query: IDP92792 hypothetical protein [Vibrio cholerae O1 biovar El Tor] AGG36647 [Vibrio cholerae O1 biovar El Tor], from CSGID

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MITINLKLGNSESITRTYSQISIEETRIVLDTPMESVNETVLSFANGVLSSITVTEPKQGVSTMPQATTRSAVYATISNKGLVLNVTTYATLSTLLSGISANAEIVKSLKQKPTQQQVVKSSLGKETQEQTQQRIQRALAAKQSKQANTGVNKQQIYDELNKARAKDAQPLMDIVKAKQTELIKCASAKAQTAEWGELVKQLSGKKFTPEAFDVFKEVLTISDITKCERMVRELANRLNIVNGVIHLIKLast
1 -160.000IDP92792 hypothetical protein [Vibrio cholerae O1 biovar El Tor] AGG36647 [Vibrio cholerae O1 biovar El Tor]  ali  100  1MITINLKLGNSESITRTYSQISIEETRIVLDTPMESVNETVLSFANGVLSSITVTEPKQGVSTMPQATTRSAVYATISNKGLVLNVTTYATLSTLLSGISANAEIVKSLKQKPTQQQVVKSSLGKETQEQTQQRIQRALAAKQSKQANTGVNKQQIYDELNKARAKDAQPLMDIVKAKQTELIKCASAKAQTAEWGELVKQLSGKKFTPEAFDVFKEVLTISDITKCERMVRELANRLNIVNGVIHLIK 249
2 -160.000IDP92777 hypothetical protein [Vibrio cholerae O1 biovar El Tor] AGG09410 [Vibrio cholerae O1 biovar El Tor]  ali follow..  99  1MITINLKLGNSESITRTYSQISIEETRIVLDTPMESVNETVLSFANGVLSSITVTEPKQGVSTMPQATTRSAVYATISNKGLVLNVTTYATLSTLLSGISANAEIVKSLKQKPTQQQVVKSSLGKETQEQTQQRIQRALAAKQSKQANTGVNKQQIYDELNKARAKDAQPLMDIVKAKQTELIKCASAKAQTAEWGELVKQLSGKKFTPEAFDAFREVLTISDITKCERMVRELANRLNIVNGVIHLIK 249
3 -143.000IDP95012 Set165a_020 [Vibrio cholerae O1 biovar El Tor]  ali follow..  75  1MITINLKLGNNESITRTYSQISIEETRIVLDTPMDTVNETVLSFANGVLSSITVTEPKSGVSTMPQATTRSAVYATISNKGLVLNVTTYSTLSAMLSGVATTAEIVKSLKQKPAQQQVVKSSLGKETQEQTQQRIQRALAAKQANAGGVGVDKQKIYDELNKARIKSGKELAKIANTKQKELVKCGAIMKGNQEWEELVKYLQGGDFTYDAFDAFSDVLKERDYSTCLTKIRALANRLNIVNGVIHLIK 253
4 -6.060IDP01628 gene: rpoH; RNA polymerase sigma-32 factor [Coxiella burnetii RSA 493] CBU_1909 [Coxiella burnetii RSA 493]  ali follow..  11  55LVLSHLRF----RIARGYSGYGLSQADLIQEGNI------------GLMKAVKRFDPQVGVRLVSFAVIRAEIHEFILKNWRIVKIATTKAQRKLFFNLRKHAKKRGWFSDHEAFALAEELNVSTKDVRQMEERLNSYDEAFDGADEESDSGTPSWGAPAHYLEDKRYNPALQLERSNWADDQE--------HRLHNAMQSMDDRS---------RDILYQRWLSEKKSTLHELAAQYAVSAERIRQLE 274
5 -5.960IDP90363 hypothetical protein [Chlamydia trachomatis D/UW-3/CX] CT_066 [Chlamydia trachomatis D/UW-3/CX]  ali follow..  17  34.........................................................................YLPGPTGGYMHHFT------------------LKKMKNSAPEQKMLKTFVIDSITPRSISPKPRAPRGSKKRRDFVNFTKTDIERVLELARQVGDKDLLARFSPKKP-----------PSLKRELIRSIRNNIVSTELWNAYVEALS............................. 154
6 -5.920IDP02351 gene: rpoH; RNA polymerase factor sigma-32 [Francisella tularensis subsp. tularensis SCHU S4] FTT1112c [Francisella tularensis subsp. tularensis SCHU S4]  ali follow..  12  60LVLSHLRF----KIARNFSGYGLSIADLIQEGNI------------GLMKAVSKFDPDQGVRLLSFAVIKAEMHDYVLKNWKIVKVATTKAQRKLFFNLRSSKDKIGWLSSENIKELAEELGVKEETVIEMEKRMCQGDASLDL----------PYTDDDGEQTSQQSLYLEDKSSNIEHQVVQQDYYDNFKAIVKDVLSGFDTRT---------KDIIMSRYLLDNKATLQDLAAKYNISAERVRQIE 277
7 -5.870IDP02565 gene: ribH; 6,7-dimethyl-8-ribityllumazine synthase [Coxiella burnetii RSA 493] CBU_0648 [Coxiella burnetii RSA 493]  ali follow..  16  10...........................IVVSQFNRAVTEKLLNGVLQRLTELGVQANQIKTVWVPGAVEIPLLAKRLAKSK---HYQAVVCLGAVIRGETDHYNYVCQQVSFGCQQPIIFGVLTTTTKEQAFARAGGERGNKGADWADAAVSMIKLMKEIEIT...................................................................................... 149
8 -5.850IDP02530 gene: ribH; riboflavin synthase beta subunit (6,7-dimethl-8-ribityllumazine synthase) [Francisella tularensis subsp. tularensis SCHU S4] FTT1674 [Francisella tularensis subsp. tularensis SCHU S4]  ali follow..  11  1......................MRKLAIVVSEFNSLITDKMLEGALEEAYAQGLKDSQICIKKVPGAVELPYAAKLLAETK---EFDAIVLLGCVIRGETDHYDYVCDQVSYGTQKPVIFGILTTHNKEQALERVGGKKGHKGKYSIQAAITMAKMKKDILEQGV.................................................................................... 147
9 -5.740IDP05516 gene: ribH; riboflavin synthase beta chain (6,7-dimethyl-8-ribityllumazine synthase) [Clostridium difficile 630] CD1697 [Peptoclostridium difficile 630]  ali follow..  18  21...........................IINSRFNEFITSKLLSGAEDCLLRHDVSPENIEIVWVPGAFEIPLVAQKMAKSG---KYDAIICLGCVIRGATSHYDYVCSEVSKGIAKPVIFGIVTTENIEQAIERAGTKAGNKGYDCAMNALEMANLFKSLN........................................................................................ 158
10 -5.490IDP90519 gene: ribH; riboflavin synthase subunit beta [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj0383c [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]  ali follow..  13  18...........................IINARFNHIITDRLVEGAKDAFLRHGGKEENLSLILVPGAFELPYALKKAIESK---KFDAICCVGAVIRGSTPHFDYVSAETTKGIANPVSFGVLTTDTIEQAIERAGSKAGNKGFEAMTTVIEMLNLSKEL......................................................................................... 154

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Pio F, Pawlowski K, Godzik A. Saturated BLAST: an automated multiple intermediate sequence search used to detect distant homology. Bioinformatics. 2000 Dec;16(12):1105-10.