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Query: IDP93836 cytochrome c-type protein NrfB [Yersinia enterocolitica subsp. palearctica Y11] YP_006003980 [Yersinia enterocolitica subsp. palearctica Y11], from CSGID

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MRVLRSFCSAILLAVLTLYTLPTFATAPANAPPTQGSRHVVEPQRNPDAACVQCHKEQKDELHGKHAGAINPNTQLAVTCTNCHGKAAILHRNGIKDVMRFNSDMLNADKAMFSVSQQNSVCMSCHQPEKLREAFWPHDVHMLKLSCVSCHQLHPKTDPMHGLDDKGRVRICVDCHRRQQELIPKDAPLast
1 -49.600IDP93836 cytochrome c-type protein NrfB [Yersinia enterocolitica subsp. palearctica Y11] YP_006003980 [Yersinia enterocolitica subsp. palearctica Y11]  ali  100  1MRVLRSFCSAILLAVLTLYTLPTFATAPANAPPTQGSRHVVEPQRNPDAACVQCHKEQKDELHGKHAGAINPNTQLAVTCTNCHGKAAILHRNGIKDVMRFNSDMLNADKAMFSVSQQNSVCMSCHQPEKLREAFWPHDVHMLKLSCVSCHQLHPKTDPMHGLDDKGRVRICVDCHRRQQELIPKDAP 188
2 -13.600IDP06013 LCCL-related multimodular protein CCp1C [Toxoplasma gondii] ACJ45039 [Toxoplasma gondii]  ali follow..  1433............................DECQRMFVKEPSFRQIACAQDFCSECNTSL--------------PRSEWAQCEKCRRNDPLASLLASG-------------------ITRLSTCLKCKKGNMA-----------QKEACELCCISWSPAGSLDQIATEREQEECFQCAKH.......... 1560
3 -13.300IDP91338 cytochrome c553 [Vibrio vulnificus CMCP6] VV2_0132 [Vibrio vulnificus CMCP6]  ali follow..  30.......................................................................QALVSEKQCDACHGANGVSGHTDIPTIAGIPEFNLSDQMLRYLEGRPANTVQHVSGDISQSGDMATIVRSLTEEEIEQLAAYYADMEFVRAKQPFDQAKSCESCHADGGSDPLDEAS 156
4 -13.200IDP91676 DNJA3_HUMAN [Homo sapiens]  ali follow..  15  219..............................................................QAAKGVNKEFTVNIMDTCERCNGKGN-------------------------EPGTKVQHCHYCGGSGMETINT---GPFVMRSTCRRCGG-----------RGSIIISPCVVCRGAQKKRVMIPVP 309
5 -12.200IDP01653 gene: dnaJ; chaperone protein dnaJ [Bacillus anthracis str. `Ames Ancestor`] GBAA4538 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  16  129..............................................................EAIFGKELNVEIPVEDPCDTCKGSGA-------------------------KPGTSKETCKHCSSGQVSVEQNTPFGRIVNRQACSHCSG-----------TGQMIKEKCTTCHGSKRKKINVKIP 223
6 -12.000IDP01404 dnaJ protein VC0856 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  17  132..............................................................EAVRGCSKEIEVPTLVHCDACDGSGA-------------------------KKGTSAQTCGTCHGHGQVQMR---QGFFAVQQTCPTCHGK------------KIIKDPCNVCHGQKTKTLNVKIP 222
7 -12.000IDP00478 gene: dnaJ; chaperone protein DnaJ YPO0469 [Yersinia pestis CO92]  ali follow..  16  130..............................................................EAVRGVTKEIRIPTLDECDVCHGSGA-------------------------KPGSSPVTCPTCHGAGQVQMR---QGFFTVQQACPHCHG-----------RGQIIKDPCNKCHGHKSKTLSVKIP 220
8 -12.000IDP06152 gene: fixP; cytochrome oxidase (CBB3-type) [Helicobacter pylori J99] NP_222856 [Helicobacter pylori J99]  ali follow..  16  111................................HLGQKELVDMGQGIFLVHCSQCHGITADGLHGSAQNLLRWDKEEGIMDTIKHGSKGMDYPAGEMPAIEMDEKDAKAIASYVMAELSSV------KKTKNPQLIDKGKELFESMGCAGCHGNDGKGLQ............................. 231
9 -11.900IDP02168 gene: dnaJ; chaperone protein dnaJ [Coxiella burnetii RSA 493] CBU_1289 [Coxiella burnetii RSA 493]  ali follow..  18  129..............................................................EAVHGLSRTIKVPTWINCKTCNGSGA--------------------------KGSSPATCPRCNGSGQMRMQ---HGFLQVQQTCSVCRG-----------RGQVIKDPCTDCHGQQTKTLSVKIP 218
10 -11.700IDP00108 gene: fdhE; FdhE protein NT01SF4751 [Shigella flexneri 2a str. 2457T]  ali follow..  15  190...............................................................................CPVCGSMPVSSMVQIGTTQ-----------------GLRYLHCNLCETE------------HVVRVKCSNCEQSGKLHYWSLDDEQAAIKESCDDCGT........... 260
11 -11.100IDP91808 gene: CTCF; CTCF [Homo sapiens] AAB07788 [Homo sapiens]  ali follow..  12  294....................HKCHLCGRAFRTVTLLRNHLNTHTGTRPHKCPDCDMAFVTSGELVRHRRYKHTHEKPFKCSMCHIRSHTGERPFQCSLCSYASRDTYKRHMRTHSGEKPYECYICHARFTQSGTMKMHTENVAKFHCPHCRKSDLGVHLRKQHSYIEQGKKCRYCHKNEK........ 493
12 -10.500IDP01308 iron-sulfur cluster-binding protein VC1516 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  16  416..............................................QTSDCTLC-----------------------MSCVAC--PTRALHLAGDSPALRFIEQDCVQ-------------CGLCVK-NKAARQGVVTLHQEEPAKCLRCHKPFAPQSMITMLQTKNRIAMCEDCRVVDMFEAMAHDP 547
13 -10.300IDP04528 gene: napH; quinol dehydrogenase membrane component [Salmonella typhimurium LT2] STM2257_1_289 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  17  197..................................................CG-CPMGALYGVLGSKG-VVTVTAKKREKCNRC------------------------------------MDCFHCPEPHRAPVLDEQSPAQVTHRDCMTC-------------------GRCVDCSEDV......... 274
14 -10.300IDP02110 putative cytochrome c peroxidase [Salmonella typhimurium LT2] STM3820 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  196.......................................DERLSGDSTISCAHCHALNAGGVDGRKTSIGVGGAVGPINAPTVFNSNIEQFWDGRAATLQEQAGGPPLNPIEMASKSWDEIISKLDKDPV-TGENITDAIAEFEKTLITPDSAFDKRGDENALTAQQKHGYCATCHGG.......... 357
15 -9.790IDP04217 hypothetical protein STM2619 [Salmonella typhimurium LT2] STM2619_1_203 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  4...........................................LPRRKCANKEC------------RQWFHPIREGQIVCSQCASAVGKEQTRKAREAAQRKAQSLQRAAEKKERAAWRQRKAA--DLTQRAVNDICRETELAE-GCISCHYRSTAAAGHLRFTRFNIHLQCDVCNVYKSGN...... 149
16 -9.750IDP93805 gene: AOAH; acyloxyacyl hydrolase isoform 3 preproprotein [Homo sapiens] NP_001170978 [Homo sapiens]  ali follow..  2.......................................................................QSPWKILTVAPL-------------FLLLSLQSSASPANDDQSRPSLSNGHTCVEKLFLKT-------------TCYLVIDKFGSDIIKLLSADMNADVVCHTCKQNTGQPLCHLYP 95
17 -9.720IDP95002 Set165a_005 [Vibrio cholerae O1 biovar El Tor]  ali follow..  12  42.................................................ECSVCSADAELWPSGS--IASKGHLIKGVVPCGCTRSPRWTQDQ--------------------FEILVKRKCEEKGYIFQGFVGEYKGAFTYLRLHNLQNDNTWETTTITSFLHIGT----CPLEARLKQKQ...... 150
18 -9.370IDP02074 gene: hybA; hydrogenase 2 protein HybA [Salmonella typhimurium LT2] STM3149 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  17  4....RDFIKAASGGALLLGAAPSVSHAAAENRPPIPGSLGMLYDST---LCVGCQA-----------------------CVKCQDINFPARNPEGEQQVWRSGTGVNKDQEENGYAYIKKQCMHCVDPNALKKDPKTGIVHYDKDVCTGCR-PYNVPK--DYNNPFGALHKCELCNQKGVERLDKGLP 191
19 -9.360IDP06294 competence protein ComF [Streptococcus pneumoniae TIGR4] NP_346618 [Streptococcus pneumoniae TIGR4]  ali follow..  16  1.............................................................................MKCLLCGQT---------------MKTVLTFSSLLLLRNDDSCLCSDCDST-----------ERIGEENCPNCMKTELS-------------TKCQDC............. 60

FFAS is supported by the NIH grant R01-GM087218-01
1 3 7 7 9 2   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Sikora S, Godzik A. Combination of multiple alignment analysis and surface mapping paves a way for a detailed pathway reconstruction--the case of VHL (von Hippel-Lindau) protein and angiogenesis regulatory pathway. Protein Sci. 2004 Mar;13(3):786-96. Epub 2004 Feb 06.