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Query: IDP93853 secretion system effector protein SseC [Yersinia enterocolitica subsp. palearctica Y11] YP_006007025 [Yersinia enterocolitica subsp. palearctica Y11], from CSGID

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSHSIGINTLVLDPWGNAVVNKNSPLSKEKVLDWRDATRSLPSEANTNLPKVPQREAQSALDRLLGSLSHSGVGGDCGRLSLDNPGETDIQQIMSMVSSLNLGLFSNLCKSISQQMERATDVQTFLRDKRVAEYQQQIDKAVEQADKAKKAGIFTAVFDWIVGAVEVVYGALKVAEGVLTGDPLAIASGVAYLAAGTAGLVKAAAETAMLLGASKEKCQEVIDVAGKVQLGCECFAMAIDIFQAARAINAARTVTKGASEVLKSGASEALTDAIKRGASGEIEQLAEKFGKDVSQQVSRNISLNVMETEMVEVGNMTSAAAKQAAKAEIALVRNITKSFTHEGIEKLVGGVAKKLAQDAIKKGITLTAEQFSQQCVKAIMKKSVTTILKDIATSPLLIMQKCTAAAGQVNSGQLAIQSANLRKEIEKLILDQDFTQFMDEWVERNKQHQLKQLKDTSEAAQDTVTKLSDNIKQNSMLQTQIAGSLVLast
1 -104.000IDP93853 secretion system effector protein SseC [Yersinia enterocolitica subsp. palearctica Y11] YP_006007025 [Yersinia enterocolitica subsp. palearctica Y11]  ali  100  1MSHSIGINTLVLDPWGNAVVNKNSPLSKEKVLDWRDATRSLPSEANTNLPKVPQREAQSALDRLLGSLSHSGVGGDCGRLSLDNPGETDIQQIMSMVSSLNLGLFSNLCKSISQQMERATDVQTFLRDKRVAEYQQQIDKAVEQADKAKKAGIFTAVFDWIVGAVEVVYGALKVAEGVLTGDPLAIASGVAYLAAGTAGLVKAAAETAMLLGASKEKCQEVIDVAGKVQLGCECFAMAIDIFQAARAINAARTVTKGASEVLKSGASEALTDAIKRGASGEIEQLAEKFGKDVSQQVSRNISLNVMETEMVEVGNMTSAAAKQAAKAEIALVRNITKSFTHEGIEKLVGGVAKKLAQDAIKKGITLTAEQFSQQCVKAIMKKSVTTILKDIATSPLLIMQKCTAAAGQVNSGQLAIQSANLRKEIEKLILDQDFTQFMDEWVERNKQHQLKQLKDTSEAAQDTVTKLSDNIKQNSMLQTQIAGSLV 486
2 -19.100IDP91310 putative translocator protein PopB [Vibrio parahaemolyticus RIMD 2210633] VP1657 [Vibrio parahaemolyticus RIMD 2210633]  ali follow..  20  102................................................................................IAVKIIAGSADDFEVELAAITDKLKSAQNELKIQEVKVAKAKHE----QEMAENQEKIKESEAAAKEAQKSGLAAKIFGWISAVVSIVVGAIMVATGV--------AAGALMIAGGVMGAVSMALQEPAVQDALKEA-GVNVDVLNKVVMALEIAVAVIGAIVTFGGAAAGGIAKLAAK--SASKIAQKVTDIATKAAANMAK--VADMGSKAATTTAKAI------RYGAETVDLTVNIGKGATDSVHAANNANVTEIQADITDLRAKMTLSQAVIDKLKEEIGKLMEDFQE................................................................................................................. 373
3 -15.200IDP04225 gene: ipaB; IpaB, secreted by the Mxi-Spa secretion machinery, required for entry into epithelial cells [Shigella flexneri] CAC05803 [Shigella flexneri]  ali follow..  11  209....................................................KLTDKSMQLEKEIDSFSAFSNTASAEQLSTQQKSLTGLASVTQLMATF-IQLVGKNNEESLKNDLALFQSLQESRKTEMERKSDEYAAEVRKAEELNRMGCVGKILGALLTIVSVVAAA--------------FSGGASLALAAV-GLALMVTD-------------AIVQAATGNSFMEQALNPIMKAVIEPLIKLLSDAFTKMLEGLVDSKKAKMIGSILGAIAGALVLVAAVVLVATVGKQAAAKLAENIGKIIG-------------------------------KTLTDLIPKFLKNFSSQLDD-----LITNAVARLNKFLGAAGDEVISKQIISTHLNQAVLLGESVNSATQAGGSVASAVFQNSASTNLADLTLSKYQVEQLSKYISEAIEKFGQLQEVIADLLASMSNSQANRTDVAKAILQQT. 578
4 -13.500IDP92687 Ser-Asp rich fibrinogen/bone sialoprotein-binding protein SdrE [Staphylococcus aureus subsp. aureus str. Newman] YP_001331559 [Staphylococcus aureus subsp. aureus str. Newman]  ali follow..  1.............................................................................................................................MINRDNKKAITKKG-----SNRLNKFSI-----KYTVGTASILVGTT--------------------LIFGLGNQEAKAAEN--------------------------------------TSTENAKQDDATTSDNKEVVSETENNSTTENNSTNPIKKETNTDSQPEAKKESTSSSTQKQQNNVTATTETKPQNIEKENVKPSTDKTATEDTSVILEEKKAPNNTNNDVTTKPSTSEPSTSEIQTKPTTPQESTNIENSQPQPTPSKVDNQVTDATNPKEPVNVSKEELKNNPEKLKELVRNDSNTDHSTKPVATAPTSVAPKRVNAKMRFAVAQPAAVASNNVNDLIKVTKQTIKVG.. 294
5 -12.600IDP04697 gene: yopB; secreted effector protein [Yersinia pestis CO92] YPCD1.29c [Yersinia pestis CO92]  ali follow..  17  101.......................................................................................ASPDTFEIELGKLVSNLEEVRKDIKIADIQRLHEQNM----KKIEENQEKIKETEENAKQVKKSGIASKIFGWLSAIASVIVGAIMVASGV-------AVAGAMMVASGVIGMANMAVKQAAEDG------QEAMKILGPILTAIEVALTVVSTVMTFGGSALKCLANIGAKLGANTASLVAKGAEFSAKVAQISTGISNTVGSAVTKLGGSFAGLTMSHAI--RTGSQATQVAVGVGSGITQTINNKKQADLQHNNADLALNKADMAALQSIIDRLKEELSHLSE................................................................................................................. 371
6 -12.300IDP92699 Ser-Asp rich fibrinogen/bone sialoprotein-binding protein SdrE [Staphylococcus aureus subsp. aureus USA300_TCH1516] YP_001574462 [Staphylococcus aureus subsp. aureus USA300_TCH1516]  ali follow..  1.............................................................................................................................MINRDNKKAITKKG-----SNRLNKFSI-----KYTVGTASILVGTT------------------------IFGLGNQEAKAAENTSTENAKQDDATTSDNKEVVSETENNSTTENNSTNPIKKETNTDSQPEAKKESTSSSTQKQQNNVTATTETKPQNIEKENVKPSTDKTATEDTSVILEEKKAPNNTNNDVTTKPSTSEPSTSEIQTKPTTPQESTNIENSQPQPTPSKVDNQVTDATNPKEPVNVSKEELKNNPEKLKELVRNDSNTDHSTKPVATAPTSVAPKRVNAKMRFAVAQPAAVASNNVNDLIKVTKQTIKVGDGKDNVAAAHDGKDIEYDTE................. 314
7 -8.140IDP91309 putative translocator protein PopD [Vibrio parahaemolyticus RIMD 2210633] VP1656 [Vibrio parahaemolyticus RIMD 2210633]  ali follow..  102......................................................................................................DAVSQSLSLLTLLYQVSKLSREQQVLQREIAVEANVASLQSQAAELNNSASAMIA-------MAVVSGVLAG------------ATAIIGALGSFKAGKEIKTEMAS--NNVLKTQKAGFDQVEELMNNGNLSKTQQDQVKRAHSLAKDSIADTTAQLTSGGRKFDKLMSS--QAKNAILQALGQMANSASNVEQTKAQARSKDDEVQATRAQAAKQKADENIGFQEGLLKELRELF--RSISDSQNQAWRASIP................................................................................................................................. 332
8 -7.790IDP91521 C2 domain-containing protein [Toxoplasma gondii ME49] TGME49_040910 [Toxoplasma gondii ME49]  ali follow..  1733............................................................................................................................................................................................................GAALLAVRARSRLQRKHLAQQLSSSSSSEVSASSASSLSPSSSSSSDFAETRAKADALRARLQAAQARLAAARETEVSSSETESSETSEASFLSSDGEWDALWQSQRAAAMERQQRLQKMVSGVKAAYRRLEEENTRLAATRRRDDKLQRQVEAERERAV-ELLKEATRRAKEE------KDLIARQPPPARDWSDTVVLSTPQIFVN-------------SQAACAPFADSGRDEGGRDEWYEVSDACSRRAESSNESRTTAGAKLRQQ---QLDLAG... 1988
9 -6.650IDP91318 biopolymer transport protein [Vibrio vulnificus CMCP6] VV2_0362 [Vibrio vulnificus CMCP6]  ali follow..  14  35.........................................................................................LAAVAVIFWLLTIEKLLFIYCAYPRLRAETLQKWQMRHDHLSWFARSQREAWLDDAHQQLFKHLIKVLVA-MLGLLGTVTGMISVFDVM-SSNPKLMASGISLTLPTMAGMVAA........................................................................................................................................................................................................................................................................................... 156
10 -6.280IDP92700 hypothetical protein SAVC_07990 [Staphylococcus aureus subsp. aureus VC40] YP_005291191 [Staphylococcus aureus subsp. aureus VC40]  ali follow..  1662....................................................................................................ALDSIEENNKNQLDAIRNTLDTTQDERDVAIDTLNKIVNTIKNDIAQNKTNAEVDRTETDGNDNIKVI----------------------------------------PKVQVKPAARQSVGVKAEAQNALIDQSDLSTEEERLAAKHLVEQALNQAIDQINHADKTAQVNQDSINAQNIISKIKPATTVKATALQQIQNIATNKINLIKANTDEEQNIAIAQVEKELIKAKQQIASAVTNADVAYLLHDEKNEIRKASAREQLTTLFNDKKQAIEAN--IQATVEERNSILAQLQNIYDTAIGQIDQDRSN-VDKTASLNLQTIHDLDVHPIKKPDAEKTINDDLARVTALVQNYRKVSNRNKADA................... 1999

FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 2 0 9   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Veeramalai M, Ye Y, Godzik A. TOPS++FATCAT: fast flexible structural alignment using constraints derived from TOPS+ Strings Model. BMC Bioinformatics. 2008 Aug 31;9(1):35