current user: public

If you have questions about the server, please let us know.

Query: IDP93927 hypothetical protein YE3551 [Yersinia enterocolitica subsp. enterocolitica 8081] YP_001007709 [Yersinia enterocolitica subsp. enterocolitica 8081], from CSGID

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100
# Score Template Links and tools%idFirst MALDGLDATGKWNPSALEAPDITSTGHNMGMVYRALAPLNGMIAQHGTALAEAFKDPKLEIDNPVKLAELSILTSNFNFGRQFQSNCLKTFRDTTGVCIRNALast
1 -59.600IDP93927 hypothetical protein YE3551 [Yersinia enterocolitica subsp. enterocolitica 8081] YP_001007709 [Yersinia enterocolitica subsp. enterocolitica 8081]  ali  100  1MALDGLDATGKWNPSALEAPDITSTGHNMGMVYRALAPLNGMIAQHGTALAEAFKDPKLEIDNPVKLAELSILTSNFNFGRQFQSNCLKTFRDTTGVCIRNA 102
2 -36.400IDP91489 type III export protein YscF [Vibrio parahaemolyticus RIMD 2210633] VP1694 [Vibrio parahaemolyticus RIMD 2210633]  ali follow..  15  5........................DATNSVNLDDVKTKLEQQAKDANKSVTDAIKNLETNADDPSKLAELQHAINKWSVVYNINATTTRAIKDVMQSILQK. 81
3 -29.600IDP93821 putative type III secretion apparatus [Yersinia enterocolitica subsp. palearctica Y11] YP_006007031 [Yersinia enterocolitica subsp. palearctica Y11]  ali follow..  14  2..............................DINALINGLAQSINKIGQDFQSQMASG--NPSDPEHMLKMQFAMQQYSSYINFSSALMKNIKDMTSGIIAK. 70
4 -14.200IDP04060 gene: mxiI; MxiI, component of the Mxi-Spa secretion machinery [Shigella flexneri] CAC05813 [Shigella flexneri]  ali follow..  14  28................................DVVSAKYSDIKMDTDIQVSQIMEMVSNESLNPESLAKLQTTLSNYSIGVSLAGTLARKTVSAVETLLKS. 97
5 -13.600IDP93928 virulence associated protein [Yersinia enterocolitica subsp. enterocolitica 8081] YP_001007710 [Yersinia enterocolitica subsp. enterocolitica 8081]  ali follow..  10  30................................SEFQKKGANITVAAEREKAALINGADTDVSNPSELLQFQSRMNNYNHAINFIATLTHKGASAIDSVLK.. 98
6 -12.500IDP91494 type III export protein [Vibrio parahaemolyticus RIMD 2210633] VP1691 [Vibrio parahaemolyticus RIMD 2210633]  ali follow..  10  45................................GGLLENISELKNTIDNAKSSLQDSMKMVGDDPAQLLQMQWALTRITFQEELIAKTVGKTTQNVETLLK.. 112
7 -6.570IDP01827 gene: fliE; flagellar hook-basal body protein FliE [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj0526c [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]  ali follow..  3.NINDLRLNNNISNTNKSQNSTGIGDEFAKMLKNEINDLNKAQESGEAAMTDIATGQVKDLHQ--AAIAITKAESSMKFMLEVRNKAISAYKEITR...... 95
8 -6.120IDP00080 gene: yneC; putative inner membrane protein NT01ST5073 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  26.............................DKVEQFIDVFRQNHLGSIKEPGNLRFDVLQDPQVLTRFYIYEAYVDEQAVAFHKTTPHYKTCVEQLEPLMTGP 98
9 -6.050IDP01949 gene: yoaB; putative translation initiation inhibitor [Salmonella typhimurium LT2] STM1822 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  1MSIVRIDAEDRWSDVVIYNNTL------TGVPENLDADAFEQTANTLAQIDAVLEKQGSSKSRILDATIFLSDKADFAAMNKAWDAWVVAGHAPVRCTVQ.. 96
10 -5.750IDP90999 hypothetical protein y1744 [Yersinia pestis KIM 10] y1744 [Yersinia pestis KIM10+]  ali follow..  14.............................EFIEEVKAALHQIIEPSREEKGNLQYDLHTESEQKGSFVFFERWASDEALEKHNKTEHFKQLVKAIDGKLES. 85

FFAS is supported by the NIH grant R01-GM087218-01
1 4 1 5 6 8   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Jaroszewski L, Godzik A. Sequence clustering strategies improve remote homology recognitions while reducing search times. Protein Eng. 2002 Aug;15(8):643-9.