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Query: IDP93931 type III secretion system protein [Yersinia enterocolitica subsp. enterocolitica 8081] YP_001007703 [Yersinia enterocolitica subsp. enterocolitica 8081], from CSGID

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKYRFVDALNSFLSTEGRQDLINSQLDCHSTIQLELNESPPINVDLLTDDIILWCSIAECQMGHLEALGQNLLSELLEYTPGNFHIGQPALSFRENTLVLSAILREPALNDTQLFADSLNEFYERSHRFSTLLAGLast
1 -73.300IDP93931 type III secretion system protein [Yersinia enterocolitica subsp. enterocolitica 8081] YP_001007703 [Yersinia enterocolitica subsp. enterocolitica 8081]  ali  100  1MKYRFVDALNSFLSTEGRQDLINSQLDCHSTIQLELNESPPINVDLLTDDIILWCSIAECQMGHLEALGQNLLSELLEYTPGNFHIGQPALSFRENTLVLSAILREPALNDTQLFADSLNEFYERSHRFSTLLAG 135
2 -17.800IDP91487 putative type III export apparatus protein NosA [Vibrio parahaemolyticus RIMD 2210633] VP1697 [Vibrio parahaemolyticus RIMD 2210633]  ali follow..  11  2....LDKMMKSLAETLGIGP----IAGENGAYTIEVDQL-TLTIKQHSSWILWETALPLRFNEHLDYQQEQALKRCMQLSLKTLRDTPSVLTTNADQQLILQGKAMIENTSNDQFAELLAQHANVCERYMEMLEH 128
3 -16.200IDP04002 gene: ipgA; IpgA, similarities to IpgE, putative chaperone [Shigella flexneri] CAC05806 [Shigella flexneri]  ali follow..  11  1.......MCRKLYDKLYEITGAKLDFNDKNQAFILLEEQIPVCITDNDEYIFLTGLLNEHELF---TENIINPEHILILNYSLSRDYSICLLPDTHQCVLTKKHYKKYL-SPDELIESLYEFLFCIKLTIANITS 126
4 -15.600IDP04314 gene: YPCD1.73c; hypothetical protein YPCD1.73c [Yersinia pestis CO92] YPCD1.73c [Yersinia pestis CO92]  ali follow..  13  2INTTFTELLPKIASHFGLDKL---SQDEYGLCELILNDRVVIMLRADENRLTLLGPILGFSGP---EARSAASQLFFCYSINALNKDGPCFAWSEELGLIAFKHLSLDELNVENVSKEIANFYDWLSLVSLPAET 132
5 -14.700IDP90410 hypothetical protein [Chlamydia trachomatis D/UW-3/CX] CT_663 [Chlamydia trachomatis D/UW-3/CX]  ali follow..  11  2....LEKLIKNFVAYMGVASEL--EFDADGSYVFPISSLVRMRVRQNDEEIIISAFLGEIPAS---MDIEKAYARMMEGNLFGQETGGAALGLDSDGHAVLVRRVPGEV-SQEDFASYIESVLNYAEAWLEDLGL 127
6 -13.800IDP90324 gene: sycE; secretion chaperone [Chlamydia trachomatis D/UW-3/CX] CT088 [Chlamydia trachomatis D/UW-3/CX]  ali follow..  12  1MQNQFEQLLTELGTQINSP-----TPDSNNACIVRFGYNNQIEEDGNSGFLVAGVMLGKLPEN---TFRQKIFKAALSINGSPQSNIKGTLGEISNQLYLCDRLNMTYL-NGEKLARYLVLFSQHANIWMQSIS. 131
7 -12.800IDP91484 putative exoenzyme S synthesis protein C [Vibrio parahaemolyticus RIMD 2210633] VP1701 [Vibrio parahaemolyticus RIMD 2210633]  ali follow..  17  3ARQTIDEVLQKFAHQIGLPELHLTD----NELSLAFDDHLKVHFIFHPETLQLEAEIVGLQIV----NSDLYRSFLAFNYHWPEHQLFFSLDNHRHVLCLNKLIGIEQL-DYEYFENALAELLTQSESWESLLSA 130
8 -11.700IDP91509 putative type III secretion protein [Vibrio parahaemolyticus RIMD 2210633] VP1665 [Vibrio parahaemolyticus RIMD 2210633]  ali follow..  11  1MSW-IDASVDEFCRGMGLDA----DFSAAGRVQLSFEQSGTLHIEKHHDRLFLM-----LARALSWHQSGERIQHALRLCNAEQGWPFEMKTLDDETLVFSAKIEGDEV-TLPTLEQAFALLVRLHDEVAS.... 123
9 -6.580IDP04306 gene: ipgE; IpgE, cytoplasmic chaperone for IpgD [Shigella flexneri] CAC05809 [Shigella flexneri]  ali follow..  15  1....MEDLADVICRALGIP------LIDIDDQAIMLDDDVLIYIEKEGDSINLLCPFCALPENI----------NDLIYALSLNYSEKICLATDDEGGNLIARLDLTGINEFEDVYVNTEYYISRVRWLKDEFA. 114
10 -5.400IDP00115 gene: VPA0551; hypothetical protein VPA0551 (gi 28900406) NT01VPA0514 [Vibrio parahaemolyticus RIMD 2210633]  ali follow..  15  61.................................LSTTEEPDLWHVADDQSITHWIEIGEPEPDRIKKASRLAKQVKV.......................................................... 104
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 9 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Jaroszewski L, Li W, Godzik A. A segment alignment approach to protein comparison. Bioinformatics. 2003 Apr 12;19(6):742-9.