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Query: IDP95025 Set165a_026 [Vibrio cholerae O1 biovar El Tor], from CSGID

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSNAGVVEKFVYENIIDNRKAVRGMRKFEEMTRKHSAKITKLFEDTEKSKQRAIKNTEKEEVKAATKKLTAEQKAAAQAEKLKAQEAAKLKKFNDWKLAQFRSAAFERLSLEQKMELKRVLSAKRSEEEIREEYRQTTAMMRRENQRRAAYERKQSKINNSGVKGGLTAGATGGGIVALAGNPAALAAAAVIGGGAMAINSGSQQFRDTKEGANLVGLDYNEFAQLANGLIAVTETIPDVSTAADKIKDLLDRSGEVMAETVFDSDKGEFDKGEGSILANLLLKQGVITGDKESLNNFMNQSPDKFIESVVKATEGLDAKQQAFVLEAFGSDFYNIIRGIQTNRQGFEAGKQNAVQFNTAEMTAATEFNKSVASMVSAISNADLNIFKSFTEFLSPSSLAMFGKLGELLNSIATLLGYTLSGALNLLSPAINLVLDGLNLLLVGLTNVQRYITELTKYVSDGLTIATEWIKNSLRGMLHDILNVLPDFAKKALGISTVEQTPTTPTTTTAPTTPKPYNMTSPTTYGGYSGYGTQNPTTTTNPTNTTATVNLVVDGNTLATAVVNSAVGQEGVKQIMHRSRPYLast
1 -121.000IDP95025 Set165a_026 [Vibrio cholerae O1 biovar El Tor]  ali  100  1MSNAGVVEKFVYENIIDNRKAVRGMRKFEEMTRKHSAKITKLFEDTEKSKQRAIKNTEKEEVKAATKKLTAEQKAAAQAEKLKAQEAAKLKKFNDWKLAQFRSAAFERLSLEQKMELKRVLSAKRSEEEIREEYRQTTAMMRRENQRRAAYERKQSKINNSGVKGGLTAGATGGGIVALAGNPAALAAAAVIGGGAMAINSGSQQFRDTKEGANLVGLDYNEFAQLANGLIAVTETIPDVSTAADKIKDLLDRSGEVMAETVFDSDKGEFDKGEGSILANLLLKQGVITGDKESLNNFMNQSPDKFIESVVKATEGLDAKQQAFVLEAFGSDFYNIIRGIQTNRQGFEAGKQNAVQFNTAEMTAATEFNKSVASMVSAISNADLNIFKSFTEFLSPSSLAMFGKLGELLNSIATLLGYTLSGALNLLSPAINLVLDGLNLLLVGLTNVQRYITELTKYVSDGLTIATEWIKNSLRGMLHDILNVLPDFAKKALGISTVEQTPTTPTTTTAPTTPKPYNMTSPTTYGGYSGYGTQNPTTTTNPTNTTATVNLVVDGNTLATAVVNSAVGQEGVKQIMHRSRPY 582
2 -62.300IDP92775 hypothetical protein [Vibrio cholerae O1 biovar El Tor] AGG09416 [Vibrio cholerae O1 biovar El Tor]  ali follow..  17  1MAE--NLVRYGASLAFDGRQALRQLRKYKETFN------------------KVQHTILKNTQKLNNEMVQGEQRVQRAKENSIEKEKRRQESFNQWRKRQTRSANFAELKAHQQVELMKILASNKSAQEIKSTYTDTLLAFKLAKKREVAAEKQANRLRLESAKRTETRIKAIKGRAGGVAGSAISGLLGLGAATLGTVAVGAKDASDTRAEAVNAGMKVEDYQRFLFGARN--ATNLSRDEIMSSLQDVNDRRGEIMNLEIKDGE-----KGVGELTDLLNFLVKNGQLALDEKAVLNSGNSAEFLEKVFKLLQGADTNTQTFLMESLASNSFRLMAQIDQNSTMYARSLEEMKTLRLGIDAANQTQVRDVGQTMSAMWNKLTYAFEAFAMAIKPETAASMNSVVNSIIKLARAMGDDLANVLERIVPWLEKLLASANENSLIDNFRSVGNILFDEIVKPALVKVGEVLLGVVATAIPEYEKYMLTEEERQALQLKKQQELDLNWQRIQPKQGGFNYLTPPPQAKTDTSSYVYPSAQQPVVVENNSTVKLEVDGKVLAQTVTKDQQFNEAMRKAAHQYGRY 585
3 -57.400IDP92749 hypothetical protein [Vibrio cholerae O1 biovar El Tor] AGG36655 [Vibrio cholerae O1 biovar El Tor]  ali follow..  16  1MAE--NLVRYGASLAFDGRQALRQLRKYKETFNKVQHTILKNTQKLNNEMVQ------------------GEQRVQKVKENTIEKEKRRQESFNQWRKKQMRSANFAELKAHQQVELMKIFASNKSAQEIKSTYTDTLLAFKLAKKREVAAEKQANRLRLESAKRTESRIKAIKARAGGVAGSAVSGLLGLGAAALGTVAVGAKDASDTRAEAVNAGMKVEDYQRFLFGARN--ATNLSRDEIMSSLQDVNDRRGEIMNLEIKDGE-----KGVGELTDLLNFLVKNGQLALDEKTVLNSGNSAEFLEKVFKLLQGADTNTQTFLMESLASNSFRLMAQIDENSTMYQRSLEEMKNLRLGIDAANQTQVRDVGQMWNKLTYLPLEAFEAFAMAIKPETAASMNSIVNSIIKLARAMGDDLANVLERIVPWLEKLLASANE-NSLIDNFRSVGNILFDEIVKPALVKVGEVLLGVVATAIPEGMRTDQLQAMYEKYMLTDEERQALQLKKQKEMDLNWQRIQPKQGGTDTSSYVYPSAQPAVVVENNSTVKLEVDGKVLAQTVTKDQQFNEAMRKAAWSV... 580
4 -10.700IDP91721 gene: MMRN2; multimerin-2 precursor [Homo sapiens] NP_079032 [Homo sapiens]  ali follow..  323..................HRSISELQADVDTKLKRLHKAQEAPGTNGSLVLATPGAGARPEPDSLQARLGQLQRNLSELHMTTARREEELQYTLE-ATLTRHVDEIKELYSESDETFDQISKVERQVEELQVNHTALMEKSLIMEENKEEVERQLLELNLTLQHLQGGHADLIKYVKDCNCQKLYLDLDVIREGQRDATRALEETQVSLDERRQLDGSSLQALQNVDAVSLAVDAHKAEGERARAATSRLRSQVQALDDEVGALKAA-------AEARHEVRQLHSAFAALLEDALRHEAVLAALFGEEVLEEMSEQTPGPLPLSYEQIRVALQDAASGLQEQALGWDELAARVTALEQASEPPRPAEHLEPSHDAGREEAATTALAG---------LARELQSLSNDVKNVGRCCEAEAGAGAASLNASLHGLHNALFATQRSLEQHQRLFHSL............................................................................................................................... 754
5 -9.460IDP06536 gene: ezrA; septation ring formation regulator EzrA [Enterococcus faecium DO] AFK59814 [Enterococcus faecium DO]  ali follow..  10  1MGN-NVIIGIVIAIII-KKKNQDRLDALEKRKEELFDLPVIEEVDDVKKLVGQSQNTFREWSQKWNDISTSSFAELESQIFEVENLNESFRFLKGKKAVVEAEATMDQMEKQVTEIREGLKELRETEERNSLAVQQALDVYEELKEKVREDEHEYGPALFELQKQIKVIEKEFTQFVTLNTSGDPVEAREVLDKAEKHTYEVEALMKKIPPLYEELHTTFEQLEEISDTYEKLMEEQYEVETVEFENRETADLIDSLYDI-----------------LEREMEAQRYVKTNQSTIAEYIK-HTTKNNRQLLIELDHTSQSGFQTEVEEMERQNEQMIPQIRQHEIPYSEVRTFYKTVFKVLEDGEKEAQEKIDTFEFKLRSLKRFVEKQRLPGLPNDYLEFFFVATDRIEELSVVLNKI----MEEVNRLVALCEEDLELLDKKTHDLV..................................................................................................................................... 500
6 -9.080IDP95280 methyl-accepting chemotaxis protein [Acinetobacter baumannii ATCC 17978] YP_001085820 [Acinetobacter baumannii ATCC 17978]  ali follow..  11  218............SQIVNVRQASSQIFSKSDVMLESLGHLSDVARKNWLTLFLGLILSLGGLIFSVFKLITLRSVMDKQRVARLQEEYDRNQNAILRLLDEIADLADGDLRSYATVSEDFTGAIADSINFAIDQLRDLVSRIHETSQEVARYTQDTQSITNQLAEASEHQAQEIAGASTAMNEMAQSIVSANASESAEVAQRSVQIASNGAQVVNRSGMDREQIQETSKRIKRLGESSQEIGNIVSLINDIADQTNILALNAAIQASMA--EAGRG------------FAVVADEVQRLAERSAS-------------ATKQIETLVKTIQTDTNEAVISMEQTTTEVVRGANLAKDAGIAL-DEIQKVSGDLAKLIASISDAAKL------SASASHIATTMTVVQEITSQTTTATFD-TARSVSELANMAESLRESVTDF............................................................................................................................................. 621
7 -8.740IDP91681 LAMC3_HUMAN [Homo sapiens]  ali follow..  1094LQRLNKGARCAQAGSQKTCTQLADLEAVLESSEEEILHAAAILASLEIPQEGPSQPTKWSHLATEARALARSHRDTATKIAATAWRALLASN-----------------------TSYALLWNLLEGRVALETQRDLEDRYQEVQAAQKALRTAVAEVLPEAESVLATVQQVGADTAPYLALLASPGALPQKSRAEDLGLKAKALEKTVASWQHMATEAARTLQTAAQATLRQTEPLTKASQLHQEARAALTQASSSVQAATVTVMGAR------TLLADLEGMKLQFPRPKDQAALQRKAVSDRLLADTRKKTKQAERAPLSSSAKKKGREAEVLAKDSAKLAKALLRERKQAHRRASRLTSQTQATLQQASQQVLASEARRQELEE--AERVGAGLSEMEQQIRESRISLEKDI-ETLSELLARLGSLPAQALNETQWALERLRLQLGSPGSLQRKLSLLEQESQQ-----QELQIQGFESDLAEIRADKQNLEAILHSLPE.............................................................................. 1581
8 -8.690IDP06206 hypothetical protein HP0489 [Helicobacter pylori 26695] NP_207286 [Helicobacter pylori 26695]  ali follow..  13  49..................................................................................................................................................................................................................................................................................................................LKGIVRILEVLLSLDFFKNANEIDSSLRNSIEWLNNAGESLKEYEGFFSDFNTSMRTNEQEVSATLNANTENIKSEIKKLENQLIETTTRLLTSYQIFLNNARDSANNQITANKTESLEALNQAKTSANNEIANQTQALTNINEAKENANNQITENKTQAITNINEARESATTQITTNKQEVLNSITQEKN..................................................................................... 244
9 -8.090IDP01114 Septation ring formation regulator ezrA BA_4901 [Bacillus anthracis str. Ames]  ali follow..  26.................RNRSYKDIEALEQWKQE----IKDKPVADELKRVKDL-NMTGQTEELFGKWREEWDEIVSTTIPKADKDLAQARKFASQFSFRKAKHAMNESISGLDDADNRITDILNELQQLLESHEKNSSEIEGLRDTYRSMKKSVLAHRHMYGAAEQKIEEMLDAESEKFKTFEEATNNGDYLKAREIVISLEEGLADLEIIIHQIATLPVQLEDLLHGHNDMVRQGLHITEAAEKVENLKTRLDGFYDQLEQEVH-----------------ARHYVEQKTLSVYEDLE-EIRTETIETKAETQLVKQSVIEKQMHILTKRFEMLQLRVAEQDIAFSIIREELEEI-QTMRKEEFEAREKLQEMRNTIFETKRFMQKSNLPGLPESIMEDLKRGQMAMQAVYEQLEVK----MNAVNSSLEEAYTTVNGVAEMTEELI..................................................................................................................................... 498
10 -7.950IDP00013 LPXTG-motif cell wall anchor domain protein BA_3254 [Bacillus anthracis str. Ames]  ali follow..  10  2........................................KTKQTIAASTLALAMIAGANSAHAEVNDATPQQSTGDRLAEIKQHKQGLDAKLQQHKEN---DQTLNELNKVKENVDTKVNELHERKQVADEKINEIKQHKQELDAKLQQDKQIAEDKIAEIKEHKKQVEDKVAEVKEHKQN-----IDNKVNEIKEHKQTVDEKVNEMKQHKENIDQKVNELKE-------------VKKQVDEKLAELKKAKQTAEDK-----------------LAELKENKPNTGNTLEELKKIKS-NLDSLSANLELAKQDVKNK-----LAALQEARQDLINKINEIKQSKQTVSDDLSKKKQDLDIKINDFKHTEKKIDDKLAEI-----HTTKQNIDNKINEVSQSKQTETKTGTTNANNNARELPNAGSKQSNNMALGMLSVLGGILLVTRNKIKTL.............................................................................................................................. 369

FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 1 6   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Dunbrack RL Jr, Dunker K, Godzik A. Protein structure prediction in biology and medicine. Pac Symp Biocomput. 2000;(12):93-4.