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Query: IDP95153 putative type IV pilus protein [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] YP_002917552 [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044], from CSGID

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MPSYPARSFQSTVEDAMKRLLPALILSIFNAVAAASPDAPEVVRYDRYLLVSPSPQQPPLEQLTALSIPPGFHPTVGEALQYLLRGSGWSLCLADARRAQLYGLPLPLSQYHTGPLRLKAALQLLASPAWRMTTDENRREVCFTSDRSLPPTVAYRHPVSLRPLGPLTAPFFFAGTVQRGDIRLAVIVPPEAVYLHQVVWLRRGEQWHGWRLERFDERRAVFRHGKRQLTLKVPELast
1 -106.000IDP95153 putative type IV pilus protein [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] YP_002917552 [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044]  ali  100  1MPSYPARSFQSTVEDAMKRLLPALILSIFNAVAAASPDAPEVVRYDRYLLVSPSPQQPPLEQLTALSIPPGFHPTVGEALQYLLRGSGWSLCLADARRAQLYGLPLPLSQYHTGPLRLKAALQLLASPAWRMTTDENRREVCFTSDRSLPPTVAYRHPVSLRPLGPLTAPFFFAGTVQRGDIRLAVIVPPEAVYLHQVVWLRRGEQWHGWRLERFDERRAVFRHGKRQLTLKVPE 235
2 -15.300IDP00141 gene: mshK; MSHA biogenesis protein MshK VC0401 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  13...........................................................................................................................................VTYSYAGEDPTAPLGWVSPAKPELQKPSYPVPTLQSIVCAEGRSCYAIIEQ--------RVVAQGDVVNGYRVATIHPDQVKLTRAGKEWRLAL.. 98
3 -11.800IDP95139 hypothetical protein KP1_5093 [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] YP_002921605 [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044]  ali follow..  13  17.....................................................................................................................................................AAERDPFQPVEDPCRTAQLSQWRYGGAVGDDAAWTGFLQDGNGKWRR----VRMDEQLLGWRVSRLTAGELDIVTSSGCEPPAW.. 97
4 -9.940IDP00160 gene: tcpS; toxin co-regulated pilus biosynthesis protein S VC0834 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  10  14.....................................................................................SLSFNVAANEFEKSQEHYKSVTDLKNKIEILELEKKITELSGEIRNARMPKIDKSA--PVLSPQPVVKSSEELQKSIEHIEEELKVELAYLVNNGQQKKYTFN-------GKLITLVNGDFVNGWKFI-EDQNKIQFSKGNKVIDVN... 152
5 -9.630IDP04699 gene: yscD; virulence protein [Yersinia pestis CO92] YPCD1.53 [Yersinia pestis CO92]  ali follow..  190..................................................IQDNHARLSLQNFLEFRLELRSMEELRQGAEFILQRLGYHEVSEEIQKQKIDSL-RKRLDALLEQFGLDSDFTVLRGQVNDEKLNSFNQLQQ-TFRQEFGNRPKLELVNVGGQPQHDELNFEVQAI---GKVPYVV--------LDNHQRYPEGAILNGVRILAIRRDAVIVSKGKREFVIQL.. 413
6 -9.380IDP04716 general secretion pathway protein C [Yersinia pestis CO92] YPO0817 [Yersinia pestis CO92]  ali follow..  80.................................................................................................................................................RKINKPDKKIEMNDVLFYSPEYIGEIKLVGVHSAPSESIAILEVKGKQ-----TTHLTRENINY-VIVKIFTDRVIIKRNGKYYSLII.. 166
7 -9.340IDP93946 general secretion pathway protein C [Yersinia enterocolitica subsp. enterocolitica 8081] YP_001007723 [Yersinia enterocolitica subsp. enterocolitica 8081]  ali follow..  12  91...............................................................................................................................................ASDNPYRVGYLAADDPLLFHAPPSNLAARVVGISSIHEKSITIIEQNKYQ-----SSYSQGEKMPE-VVIKIFDDRVIINHQGYYESLLL.. 179
8 -8.960IDP91490 putative type III export protein PscD [Vibrio parahaemolyticus RIMD 2210633] VP1695 [Vibrio parahaemolyticus RIMD 2210633]  ali follow..  12  199..................................................VEDRTQKLQLLGRIDYKSDLRTMEEIRRGVRFILRNLGYHYIDDASKWNQVEQIYMDTLKELLTNAELLKKVQLVRGELDDIETTRFYGVTR-DFREQYGEKPYLVLKSIPKVSKGTDIDFPFRSVNF-GQVPYVI--------LTDNVRYMVGARTQGYRISSVTPAGIELVKGGRVITIEL.. 422
9 -7.360IDP91461 Phage protein U [Vibrio vulnificus CMCP6] VV1_0087 [Vibrio vulnificus CMCP6]  ali follow..  2...................................................................................................................ADVMMALGDYRFSINTAALKSISETHSWRWTDHNVAGAKPKPQFIGPDLSSLRFMGIIYPHFRGGLEQTDKMKAEGDKGAPLRLVDGTGRDWGYWTIRQLQVEKQELFTKGVEFTIELKE 125
10 -6.100IDP95107 pullulanase-specific type II secretion system component C [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] YP_002917874 [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044]  ali follow..  14  81.....................................................................................................................................................KISPTPTDAASLNQVPVSSLKLRLAGLLASSNPARSIAIIEKG---NQQVSLSTGDPLPG-RIAAILPDRIIVNYQGRKEAILLFN 165

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Rychlewski L, Zhang B, Godzik A. Fold prediction by a hierarchy of sequence, threading, and modeling methods. Protein Sci. 1998 Jun;7(6):1431-40.