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Query: IDP95404 set236a-006 [Undefined organism], from CSGID

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MVKTKKQKMAYKKSKLKKRGKVAPHIKRMTKSKAPRPDRFDHTKPLPKVAIPATITADILDKKDLLVAPDFANHIILRYLRKNPALIEKLHEPHVLRSAEYEKMKKWVRQELRVLVGMFVFDSGLKGLATADTEKILTAHRSTIERQMHYPGLYDDLFGSKKPEVILDLCAGLNPCAYEYLGCTPVYYAIDVSPQLMAFVQQFFDDHAIVGKAWAEDITTMKEFPDADTILIFKGMDVLERVKYGYGEQLLNVFLERRIIVSFATATISGGREISTTKRTWVERWAANNNKSVRIHDIPGERFYIILast
1 -105.000IDP95404 set236a-006 [Undefined organism]  ali  100  1MVKTKKQKMAYKKSKLKKRGKVAPHIKRMTKSKAPRPDRFDHTKPLPKVAIPATITADILDKKDLLVAPDFANHIILRYLRKNPALIEKLHEPHVLRSAEYEKMKKWVRQELRVLVGMFVFDSGLKGLATADTEKILTAHRSTIERQMHYPGLYDDLFGSKKPEVILDLCAGLNPCAYEYLGCTPVYYAIDVSPQLMAFVQQFFDDHAIVGKAWAEDITTMKEFPDADTILIFKGMDVLERVKYGYGEQLLNVFLERRIIVSFATATISGGREISTTKRTWVERWAANNNKSVRIHDIPGERFYII 306
2 -55.300IDP95419 set236a-021 [Undefined organism]  ali follow..  18  2...............................................EDEKLAKVLVAVRDSS--------------RYASVADDTVRRIATASLSAARGVNDAVKRTKRGLHEIFGAYLPSTQSVEERRDVLSRTMSSHASTKERLPILTEFYAAVFERLPPRVIADLACGMNPLTVEWMPVDVLYRASDIDSRLMAFLDEALTVLGVPHEVAVHDLLTGPDPKPADVTLLLKAVPCIETQQKKLGWGLIDAINSPVVVVSFPTKTLGQKKGMYRTYSSGFAAHAEGRPWQVEELEFGNELVYVV 265
3 -54.700IDP95398 set236a-063 [Undefined organism]  ali follow..  20  5...............................................KVFNADDVAASILKSP--------------KYRAIAPDAVNRIAAEECQKGG--ADCEKRARNRLHQIADAFMNQKEQSMLERGDLDAALGQHASTRERMATREEYMSLIARHCPGGIICDAACGLDPLM--LGAAGYAVRGLDIQMTCVDVINAWARRESWDVKAEGADLLGRAELPKSDLTLFMKLLPVLDAQRAGEGMRLLSLSSSPRVIVSFPTRTLGGRGGMERNYGERFESALPVEFEICERMATGNELFYAL 251
4 -54.400IDP95455 set236a-057 [Undefined organism]  ali follow..  20  5...............................................KVFNADEVAASILKSP--------------KYRAIAPDAVNRIAAEECQKGG--ADCEKRARNRLHQIADAFMNQKEQSMLERGDLDAALSQHASTRERMATREEYMSLIARCPPGGIICDAACGLDPLM--LGAAGYAVRGLDIQMTCVDVINAWARREGWDVKAEGADLLGRAELPKSDLTLFMKLLPVLDAQRAGEGMRLLSLSSSPRVIVSFPTRTLGGRGGMERNYGERFESALPVEFEICERMATGNELFYAL 251
5 -54.200IDP95437 set236a-039 [Undefined organism]  ali follow..  17  5...............................................PENDITELIASVRGSS--------------KYGSISEAMIRSIGLRELAARRNLKEAIKATKNKLHQVAGAYLDGRLPHAQFRLACRQIMRNHASTRERLPILEDFYAATLALGQVSSVLDLACGLNPLTLPWMPLDARYYACDIYADMIAFLNGFFTRAGLEGQTEECALAAGAPNVQVDLALVLKALPPLDQQAKHAGRDLLRALNARHILVSFPAQSLGGRKGMAENYEQRFRTLADSEGWAIERFVFPTELAFLV 279
6 -53.700IDP95444 set236a-046 [Undefined organism]  ali follow..  20  5...............................................KVFNADEVAASILKSPKYSAIA--------------PDAVNRIAAEECQKGG--ADCEKRARNRLHQIADAFMNQKEQSMLERGDLDAALGQHASTRERMATREEYMSLIARCPPGGIICDAACGLDPLM--LGAAGYAVRGLDIQMTCVDVINAWARRESWDVKAEGADLLGRAELPKSDLTLFMKLLPVLDAQRAGEGMRLLSLSSSPRVIVSFPTRTLGGRGGMERNYGERFESALPGEFEICERMATGNELFYAL 251
7 -53.000IDP95413 set236a-015 [Undefined organism]  ali follow..  19  1..................................................MVSELVTSITNSK--------------KYRSVYPKTIERIVQQAVAKQPNEKQAQHYARNVLHQVWGAYWGTR-DGMSVQEAVLKILVLQSSTRERAPIVTEFYNQIFATGQPETILDHACGLNPLSFFWMDLTTQYQAYDIDIEQIELLNKIAQTTGISLTATVADIVTDS-YGYADVVFLLKTLPCLEQQEKGISLDILRKQQCKYIVVSYPIKSIGGKKGMAAFYTQQFQELTKHEKWQTEKLNFETELVFVV 261
8 -52.300IDP95458 set236a-002 [Undefined organism]  ali follow..  21  1.................................................................................MSLDLIRTIAAQELTKRRTHKEAVKATKNKLHQVSAAYLDPRENAEANKQTCKQIMSHHASTRERLPLLEQFYSTLLALPAPHSVLDLACGLNALTLPWFPHAITYYACDIYRPMIDFLNATMEIMHIRGCAEVRDILQSCPTQEADLALVLKTIPCLEQIDKQAGTRLLRAINARYMIVSFPAQSLGGRKGMVTNYEARFYQLVEGENWEIQKYEFATELVFVI 245
9 -52.100IDP91052 gene: rmtD; 16S rRNA methylase [Pseudomonas aeruginosa] PSA0001 [Pseudomonas aeruginosa]  ali follow..  24  1...................................................MSELKEKLLASKKYR--------------DVCPDTIERIWRECSAKFKKEKDVDKAAREALHGVTGAFMTEREYKRAAARDWEALLGMHASTRERLESMDRVFDQLFESGTPARILDLACGLNPVYLAHRLPNAAITGVDISGQCVNVIRAFG-----GAEARLGDLLCEIPEDEANAALLFKVLPLLERQRAGAAMDALMRVNAEWIVASFPTRSLGGRNGMEKHYSEWMEAHVPENRAIAARLTGENELFYVL 244
10 -52.000IDP95396 set236a-061 [Undefined organism]  ali follow..  19  1...............................................MDERSRALFDRLLQSKKYGAVC--------------RDTLQRVAEECSARHKKPKEAEKAAKEKLHGITGAFLTPVESRRLFGENLIRILEQHASTRERLPLMDALYARLFETGRPRCILDLACGLNPVYLSVRLPDCRIVGVDIQGECVHILNEAIGSPE-RIIGIHADLLSRDPSERFDVALMFKILPLLDRQKAGAAMDVMAAVNARYLVISYPTRTLGGRDGMMENYAAWMADHMPDNRIVVDQFVAGNELFYIL 261
11 -51.300IDP91053 ENC0002 [Enterobacter cloacae]  ali follow..  23  1...................................................MSELKEKLLASKKYR--------------DVCPDTIERIWRECSAKFKKEKDADKAAREALHGVTGAFMTEREYKRAMERDWEALLGMHASTRERLESMDRVFDQLFEIGTPARILDLACGLNPVYLAHRLPNAAIAGVDISGQCVNVIRAFG-----GAEARLGDLLCEIPEDEADAALMFKVLPLLERQRTGAAMEALMRVNAEWIVASFPTRSLGGRNGMEKHYSEWMEAHVPENRAIAARLTGENELFYVL 244
12 -50.600IDP95407 set236a-009 [Undefined organism]  ali follow..  20  2.....................................................................................................KEAVKAVKNKLHQVAGAYVEGGDSGESLKGGCRRIMGSHASTRERLPILEEFYGRIFELPPVRSVVDVACGLNPLAIPWMGLGTGYVAYDIYEDMMGFLGGVLGIFGVEGRGETRDVVAEPSVEEVDLALVLKAIPCLEQIDRSAGRRLLDGLKAKNMVVSFPVASLGGRNGMAANYEARFWELAEGQDWVVKKLVFRSELVFVV 230
13 -50.500IDP95395 set236a-060 [Undefined organism]  ali follow..  19  4...............................................................................................EFARTGGDCEKRARNRLHQVADAFMNQAQQHAMERRDVMGALAQHASTRERLANVDEYLALIARALKGELICDAACGLNPLL--LGNAGYDVLGLDIQLTCVDVINAWARSEGWRVSARGADLVGCEALPECGLTLMLKLLPVMDAQRAGESMRLLMAARSPRVLVSFPTRTLGGRGGMERNYSERFESGLPDVYEISERAVIGTELFYAL 218
14 -50.300IDP95399 set236a-064 [Undefined organism]  ali follow..  23  1...................................................MSELKEKLLASKKYRDVC--------------PDTIERIWRECSAKFKKEKDADKAAREALHGVTGAFMTEREYKRAAARDWEALLGMHASTRERLESMDRVFDQLFEIGTPARILDLACGLNPVYLAHRLPNAAITGVDISGQCVNVIRAFG-----GAETRLGDLLCEIPEDEADAALMFKVLPLLERQRTGAAMDALMRVNAEWIVASFPTRSLGGRNGMEKHYSEWMEAHVPENRAIAARLTGENELFYVL 244
15 -49.900IDP95434 set236a-036 [Undefined organism]  ali follow..  21  1.....................................................................................MIRSIGLRELAARRNLKEAIKATKNKLHQVAGAYLDAR-QSSALARACLTIMRHHASTRERLPILESFYATTLALGPVRSVLDLACGLNPLALAWMPLAVRYYACDIYADMIAFLNGFFAQAGIRGQARVCDLVAGAPDEQVDLALVLKALPPLDQQAKHAGRDLLRALNAQHILVSFPAHSLGGRGGMTENYEQRFRALADAEGWSIERFIFPTELAFLV 265
16 -48.300IDP95411 set236a-013 [Undefined organism]  ali follow..  25  1........................................................................................................................................MAHHASTRERLVILDEFYCTLFALPPITSILDLACGLNPLAIPWMPLGVTYAACDIYQDQVDFLQQCFVVFGVEGAAKPCDLLQACPTQAADVVLLLKTIPCLEQVDKTIGRKLLDTLNAPILCVSFPAQSLGGRHGMTVNYEQHFRELVADKPWRIERFDFATELVFRV 174
17 -48.000IDP95454 set236a-056 [Undefined organism]  ali follow..  24  1...........................................................................MEKHNYLCGALVECAYAEAAARYAKAKDADRAARRELHRVAGAFFSREEARRAEKEALSRILSLHASTRERLPLMDALYAHLFETGKPRRVLDLACGLNPIY--LAARGINVLGLDAHLGAVALVNRFAEENALDARAEGADLRTAEPEERFDLALVFKLLPLLGANGY----DLLGRVRAGFVAVSFPTRTLSGRSGMERNYSSAFEENCPQRFAIADRFVAGNELIYVL 240
18 -47.500IDP95435 set236a-037 [Undefined organism]  ali follow..  25  1........................................................................................................................................MRHHASTRERLPILESFYASTLALGPVRSVLDLACGLNPLALPWMPLDARYYACDIYADMIAFLNSFFAQAGIRGQARVCDLVAGAPDEQVDLALVLKALPPLDQQAKHAGRDLLRALNARHILVSFPAHSLGGRKGMAENYEQRFRALADAEGWSIERFVFRTELAFLI 174
19 -47.200IDP95415 set236a-017 [Undefined organism]  ali follow..  25  1........................................................................................................................................MRHHASTRERLPILEGFYATTLALGPVRSVLDLACGLNPLALPWMPLDARYYACDIYADMIAFLNSFFAQAGIRGQARVCDLVASAPDEQVDLALVLKALPPLDQQAKHAGRNLLRALNARHILVSFPAHSLGGRGGMAENYEQRFRALADAEGWSIERFVFPTELAFLV 174
20 -47.000IDP91051 gene: rmtC; 16S rRNA methylase [Proteus mirabilis] PRM0001 [Proteus mirabilis]  ali follow..  18  4...............................................NDNYIEEVTAKVLTSGKYSTLYP--------------PTVRRVTERLFDRYPP-KQLEKEVRKKLHQAYGAYIGGIDGKRLEKEICLKILNLHTSTNERTVAYDELYQKIFETGVPTSITDAGCALNPFSFPFFTELGQYIGFDLDKGMIEAIEHSLRTLNAPEGIVVKQGDILSPSGESDLLLMFKLYTLLDRQEEASGLKILQEWKYKNAVISFPIKTISGRDGMEENYTVKFENDLVGSDLRIQKLKLGNEMYFIV 278
21 -46.300IDP95457 set236a-001 [Undefined organism]  ali follow..  22  9.........................................................................................................................QGTDNETFKAVSLQLMGKHASTRERRSILPDFYPRIFALPPIHSVIDIACGLNPLAHPWMPLAATYDAYDIYQGMMTFLNDYFALRNIRGTASACDVIQSCPTQEVDVALLLKVLPCLEQLEKWAAHHLLHTLNARYLIVSYPIQSLGGKKGMSTYYESHFRSLISDTPWTIKKLEFANEMVFVV 197
22 -44.500IDP95425 set236a-027 [Undefined organism]  ali follow..  27  2...................................................................................................................................................................RSVLDLACGLNPLALPWMPLDARYYACDIYADMIAFLNSFFAQSGIRGQARVCDLVAGAPDEQVDLALVLKALPPLEQQAKHAGRDLLRALNARHILVSFPAHSLGGRGGMAENYEQRFRALADAEGWSIERFVFPTELAFLI 147
23 -43.400IDP95459 set236a-003 [Undefined organism]  ali follow..  23  11.........................................................................................................................EAAEPGARTTILSRIMHHHASTRERLPILDPFYTTIFEPGEVHSILDVACGLNPLAIPWMPLDTTYHALDIYADMIQFVGRCLALMQVKGTADTCDVVAA-LRRPVDVAFVLKTIPCLEQVDKRIGSSLLDILGAKQLVVSFPIQSLGGKRGMLQHYSAHFAELMAGRPWPVQRLEFESELVFIV 213
24 -42.600IDP95448 set236a-050 [Undefined organism]  ali follow..  26  1..................................................................................................................VTGAFMTEREYKRAAARDWEALLGMHASTRERLPVMDRVFDQLFEIGTPARILDLACGLNPVYLAHRLPNAAIAGVDISGQCVNVIRAFG-----GAEARLGDLLCEIPEDEADAALMFKVLPLLERQRTGAAMDALMRVNAEWIVASFPTRSLGGRNGMEKHYSEWMEAHVPENRAIAARLTGENELFYVL 195
25 -42.400IDP95402 set236a-004 [Undefined organism]  ali follow..  19  1...........................................................................................................MQVYTPKVFSEFTGGDLNNDDLKTVCKNILLRHNSTKERMGFIDDFYAAIHSIPSAQKIIDIGCGFNPFSYPWLAGQIEYAGFDIDVLLTEMMNNAWKQVGLPVSVQYNDVFFGLGHTENDVLFFLKFFPCLEQQEKGISAKIFNAVKSNAFVVSFPSVSLTGKNGMRENYDGFLNQLTAGMNLHSEYFDFPTERVYIL 206
26 -33.200IDP95408 set236a-010 [Undefined organism]  ali follow..  17  5...............................................SGDDITELITSVRSSQ--------------KYAAISGAMIRSIGLRELAARRNLKEAIKATKNKLHQVAGAYLDAR-ANSKLRQACREIMRHHASTRERLPILESFYASTLALGPVRSVLDLACGLNPLALPWMPLDARYYACDVYADMIALF.......................................................................................................... 172
27 -26.000IDP95451 set236a-053 [Undefined organism]  ali follow..  23  1...................................................MSELKEKLLASKKYR--------------DVCPDTIERIWRECSAKFKKEKDADKAAREALHGVTGAFMTEREYKRAMERDWEALLGMHASTRERLESMDRVFDQLFEIGTPARILDLACGLNPVYLAHRLPNAAITGVDISGQCVNVIRAFG-----GAETRLGDLLCEIPEDEADAALMFKVLPLLERQRTGAAMDALMRVNAEWIVASFPTRSLGGRNGMEKHYSEWMEAHVPENRAIAARLTGENELFYVL 244
28 -20.200IDP90709 gene: ubiG; 3-demethylubiquinone-9 3-methyltransferase [Yersinia pestis CO92] YPO1215 [Yersinia pestis CO92]  ali follow..  46.......................................................................................................................................................NYILQRSGGIFEKKVLDVGCGGGILAESMAREGAQVTGLDMGYEPLQVARLHALETGVKLEYVQETVENHQHPQHYDVVTCMEMLEHVPDPASVVRACAQLVKPGGHVFFSTINRNTKS---MAVVGAEYLLKMVPKGTHDAKKFIRPSELIGWV 201
29 -19.800IDP95440 set236a-042 [Undefined organism]  ali follow..  12  35.................................................................................................................................................................KEDVVLECACGTGLLSGVIAEKCKNLVATDLSVKMLKKASKKHRAYT-NIEFREGNILQIEPDGKFDVVVAANVIHLLDEPYKALAELDRVCRIGGKIIIP............................................ 135
30 -19.400IDP02273 hypothetical protein GBAA3714 [Bacillus anthracis str. `Ames Ancestor`] GBAA3714 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  1.......................................................................MKKRKDIHFRIEEKLLERFESAHYEGLKKTDVLTHAIQQFCMKVEYEKMNDVKRQYSVSNNLQTRIDTHKHYEEKQVNLDEIVIEHLQLQGRERILEVGCANGKFLSLLQANGGQLTGFDQSEAMLSEATKTNN----LIEWRLGDAGKLPEANYYDLIVARHMLYHMKDVEKTIQGFHKVIHPGGSLLAT............................................ 191
31 -19.100IDP92740 hypothetical protein lpp2134 [Legionella pneumophila str. Paris] YP_124446 [Legionella pneumophila str. Paris]  ali follow..  13  6.........................................................................................................................................ERYVLGNYIQNKINDVFLKTIHSKLSGNILDIGCGDGHYTSLLAGKHGQVLGIDSSEQMIMHANQQWARTGLS--FEVHNIEEFHQPQSFDLALSFWCLHWTNIHI--SFPNIFHLLKREGKLY............................................. 127
32 -18.900IDP92743 hypothetical protein lpp2747 [Legionella pneumophila str. Paris] YP_125052 [Legionella pneumophila str. Paris]  ali follow..  12  4.............................................................................................................................ESLLAILNNWSATNYAKGNYILREISSKFLAKISIHSNDYLLDAGCGDGSFTQMLANLDGYVLGLDRSKTMIDYANKHCRSINV--RFDIGDIQEPIIYGPFDNILSFWCLHWTDLEK--SLSNLYHVLPGGKICAIFSS......................................... 142
33 -18.400IDP95362 set237a-002 [Escherichia coli]  ali follow..  12  38.....................................................................................................................................................TIDYWIKHGCINKKSHLLDLACSTGFSSRECFKKGASAEGIDISESAVMVANEKAKKLKANLKYYVADACDLPEDNTFTHVLGGCNFAFIQNRLIALNETHRCLNHMGSMCIS............................................ 154
34 -18.300IDP02332 UbiE/COQ5 family methlytransferase [Bacillus anthracis str. `Ames Ancestor`] GBAA1462 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  6.....................................................................................................................................HDANNKYTYAQRNAHISWGEMIKGITNIQNKQIIDIGCGGGIYTKELALMGASVVGLDFSKEILQAAKENCSGFS-NISFIHGDAHSTPPNDTFDIVISRAVIHHLQDIPTFLREASRILKKNGVLIVQDRTIEDCTIPGSPEHIRGYFFSIFPK.................. 161
35 -17.900IDP95361 set237a-001 [Yersinia pseudotuberculosis PB1/+]  ali follow..  10  38.......................................................................................................................................................DYWIEKSRINSNTYLLDLACSTGFSARNIVHKGCSAEGIDISARSIESANQLAVQGNIAVHFSVGNAESVSTDNTFTHITAGCCFGFISDKPAALVEVQRVLKQDGFLCIS............................................ 152
36 -17.700IDP06181 hypothetical protein jhp0993 [Helicobacter pylori J99] NP_223710 [Helicobacter pylori J99]  ali follow..  11  60.................................................................................................................................................................PKPLIYDLGCSTGNFFIALNQQDIELVGIDNSMPMLKKAQEKLKDFN-NVRFECMDFLEVK--KEASAFSLLFVLQFVRPMQREVLLKKIYNSLALNGVLLVGEKIMSEDRILDKQMIELYYLYKQNQGYSHNEIAFKREAL... 202
37 -15.800IDP02131 methyltransferase [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj1419c [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]  ali follow..  13  18..............................................................................................................................................YSYRPNYAPKTIDMLISLVKDIKVADIGAGTGNLSIMLLERGCKVVSVEPNDAMREIGIERTKDQKIDWVRATGLNSTLQ-NSEFDWVTFGSSFNVMDRNE--ALEEAHRLLKSEGYFSCM........................................... 137
38 -15.300IDP06435 gene: E1R; E1R [Monkeypox virus Zaire-96-I-16] NP_536525 [Monkeypox virus Zaire-96-I-16]  ali follow..  531.....................................................................................................EDKLSDIGHQYAANNDKFRLNPEVSYFTNKRTRGPLGILSNYVKTLLISMYCSKTFLDDSNKRKVLAIDFGNGADLEKYFYGEILLVATDPDADAIARGNERYNKLNIRSDTFVSSVREVFYFGKFNIIDWQFAIHYSPRHYATVMNNLSELTASGGKVL............................................. 709
39 -14.300IDP04455 putative RNA methyltransferase [Yersinia pestis CO92] YPO1336 [Yersinia pestis CO92]  ali follow..  11  17......LDKPYPQQLADKQHHLESLLAGHAVTQFGRESAFRNKAKMVVSGSVERPLKTFIARAGLTPYNVELKFLLLTESTYNGELMLRFVLRSETKLAQLIAALPWLQQQLPQLAVISANIQPVHMAILEGEREIPSFFQTNPQVAASLYATARQWVQEHEVHSMWDLFCGVGGFGLHCAGPETQLTGIEINAEAIACARQSAEQLGLNVSFAALDSTRFAEAQIPELVL-------VNPPRRGIGRELCDYLPKFILYSSCNAETMAKDISLLAGYH........................... 350
40 -13.400IDP05651 gene: cfa; guanylate kinase [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj1183c [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]  ali follow..  1........MLEKTLIKSILKKWDYGDFRVVFWDKEEFFIGNKPAKFSLIFKEKIPFLELFGDTSLVFARHYMQEGDYDEMAKVLYYFSNQQFFKTKKDVLSKITQKQESKNIHYDIGNDFYKLWLDDTMSYSCAYFKEPNNTLYEAQINKIEHTLKKLDLKEGEKLLDIGCGWGWLSIMAAQKGVKVVGITISEEQCKKAKERVKELGLEIEIRLQNYQDLEFENYFDKVVSVGMFEHVGKENLGLYFMKVKQV.................................................... 256
41 -13.400IDP04372 gene: b4371; ribosomal RNA small subunit methyltransferase C [Yersinia pestis CO92] YPO0427 [Yersinia pestis CO92]  ali follow..  11  82........YYWPKSKQEAQFQLANLLSILPVGT--------------------DIFVVGENRSGVRSAEEMLADFAQLAKIDSARRCGLYHGRLDKQPEFDADAWWESYQTVKTLPGVF-----------------------SRDSLDSGSHLLLSTFNEPFKGSVLDVGCGAGVLASVLAQQKIKWTLSDVSAAAIEASRATLAVNNIEAQVIASNVYS-DIKGRFEMIISNPPFHDGIQTSLTAAEMLIRGATA----------HVGGKLRIVANSFLPYPALLDAAFGSHEVLA-QNGRFKVY 332
42 -13.300IDP06161 gene: ubiE; ubiquinone/menaquinone biosynthesis methyltransferase [Helicobacter pylori J99] NP_224094 [Helicobacter pylori J99]  ali follow..  2.................................................................................................KKENRLKQEKIINMFDDIASSY-----------DQANRLMSFGLDVKWRQRACEHA-FLFLENKKALRLVDVACGTGDMLVAWQKSFKECLGIDPSNNMLELAIKKCEELENKASFIQAQAKDLKENNSVDILSIAYGLRNIVERQEAL-KEFFRVLKTRGVLVILEFLKKDNPTWLDKISGFYTNKVLPLVGGAIS............ 194
43 -13.000IDP91276 ribosomal protein L11 methyltransferase [Bacillus anthracis str. Sterne] NT05BA4392 [Bacillus anthracis str. Sterne]  ali follow..  10  1........MKWSEISIEAVEAVSHILHEAGASGVAIEDEIYALNPDEYPAEGVLIKAYFPQTDSLHETIAGVKSSIDVLPSYDIEIGTGNITVNEVNEEDWATAWKKYYHPVQISDTFTIVPTWEEYTPSSPEEKIIETHPTTTMCIRALEKTVQ------PGDTIIDVGTGSGVLSIAAAKLGASVQAYDLDPVAVESAEMNVRLNKTDVSVGQNSLLE-GIEGPVDLIVANLLAEIILLFPEDAARVV---KSGGLFITS----------GIIAAKEKVISEALEKAGFTIEEVLRMEDWVAII 308
44 -12.900IDP00614 modification methylase, HemK family SACOL2109 [Staphylococcus aureus subsp. aureus COL]  ali follow..  1.MVNYKEKLDEAIHLTQQKGQWTRTDFVVHMHDDMPKAMIMKFDLALQRMLLGEPIQYIVGFASFYGRTFDVNSNCLIPRPETEEVMLHF------------------------------------------------------------------LQQLEDDATIVDIGTGSGVLAITLKCEDLNVIATDISLEAMNMARNNAEKHQSQIQFLTGDALKPLINEGIKLNGLISNPPYIDEKDMVTMSPTVTRFEPHQALFA............................................ 211
45 -12.800IDP01630 gene: hemK; protein methyltransferase HemK [Coxiella burnetii RSA 493] CBU_1964 [Coxiella burnetii RSA 493]  ali follow..  10  1.MLSIKEATKNISQQLTTVSKKSRADLFAYPEIQLNSSQQKTLSAYVKRRLKGEPIAYILGQKEFWSLNLKVTPDV-------------------------------------------------------------------RPETEMLVEWILKNLPKDEKLRIADLGTGSGAVALAIAVEHWTIDATDNSQAALKIAEINAKQHEINCNFYHGEWCQALPRRDYHAIVG.......................................................................... 185
46 -12.600IDP06062 gene: pcm; protein-L-isoaspartate O-methyltransferase [Helicobacter pylori J99] NP_223734 [Helicobacter pylori J99]  ali follow..  10  3................................................................................SIKNHLMCEEIHKRFNLHPKVREAMESIEREV------FVPAPFKHFAYTLNALSMQAQQYISS---PLTVAKMTQYLEIDHVDSVLEIGCGSGYQAAVLSQIFRRVFSIERIESLYIEARLRLKTLGLNVHVKFADNKGWERYAPYDRILFSACAKNIPQ-------ALIDQLEEGGILV............................................. 169
47 -12.500IDP01214 gene: cfa; cyclopropane-fatty-acyl-phospholipid synthase BA_3460 [Bacillus anthracis str. Ames]  ali follow..  1........MVEELFYKKILKNLFSDPVQITLWNGETIQYGEGEPQFHVTFHKPLSKKEIAKDPSIAEIEGNLEKAIQSIYKRQDSFLGDSKLQYFKSKWNFSKQKNKDDIAHHYDIGNDFYKLWLDETMTYSCAYFQNEQDSLTTAQHNKVNHILKKLNLQKGDTLLDIGCGWGELITAAAKQGVKAMGVTLSEEQYAKASERIKQEGLTVEVSLLDYRDIK-NQKFDKIVSVGMIEHVGKDNITQYFETVNTL.................................................... 258
48 -12.400IDP91265 2-heptaprenyl-1,4-naphthoquinone methyltransferase [Bacillus anthracis str. Sterne] NT05BA1551 [Bacillus anthracis str. Sterne]  ali follow..  12  1...............................................................................................................................MQQSKEERVHDVFEKISDKYDVMNSVISRIMDVKPGSKALDVCCGTADWTIALAGAQGKVVGLDFSENMLSVGKQKVEALQLKVELLHGNAMELPEDNTFDYVTIGFGLRNVPDYMHVLKEMTRVVKPGGKVIC............................................. 151
49 -12.200IDP00962 gene: cfa; cyclopropane fatty acyl phospholipid synthase STM1427 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  1MSSSCIEEVSVPDDNWYRIANELLSRADITINGSAPSDIRVKNPDFFKRVLQEGSLG-MDGWWECERLDIFFSKVLRAGLENQLPHHVKDTLRILGARLINLQSKKRAWIVGNDLFSRMLDPYMQYSC------AYWKDADTLEAAQQAKLKLICEKLQLQPGMRVLDIGCGWGGLSQYMATHGVSVVGVTISAEQQKMAQTRCEGLDV--SILLEDYRDLN--DQFDRIVSVGMFEHVGPKNYNTYFEVVDRN.................................................... 256
50 -11.700IDP06056 hypothetical protein jhp1397 [Helicobacter pylori J99] NP_224115 [Helicobacter pylori J99]  ali follow..  11  34.................................................................................................................................................................NSGAILDIGSGCGVLGLLCARDLASVHLVEKDSKMAFCSQKNALKFPN-AQVFESDFLDFNPPILYDAIVC.......................................................................... 105
51 -11.400IDP02069 gene: ubiE; ubiquinone/menaquinone biosynthesis methlytransferase UbiE [Coxiella burnetii RSA 493] CBU_2017 [Coxiella burnetii RSA 493]  ali follow..  10  13................................................................................................QTVPTDQKTDKVKHVFESVAAKY-----------------LMNDLMSLGIHRWWKDFAITQCRLRTGQRILDLAGGTGDLAKRISPLEGEVVIADINAAMLNVGRRRLLDQGINIQFIQADAEKLPPNNFFDRIVIGFGLRNVTNQLAALQSMHRVIKPGGFVVI............................................. 167
52 -11.300IDP02356 gene: ubiE; menaquinone biosynthesis methyltransferase [Francisella tularensis subsp. tularensis SCHU S4] FTT1296 [Francisella tularensis subsp. tularensis SCHU S4]  ali follow..  12  13................................................................................................TQVPWEEKQKKVAGVFHSVAAKY-----------------LMNDLMSFGIHRIWKKQTIAKSGVRKGDNVLDLAGGTGDLAYKFCQMQGKVILSDINSSMLEVGKEKLTNKGCNIEYVQANAECLPPDNYFDCITISFGLRNVTDKDKALASMCRVLKPGGRSLV............................................. 167
53 -11.300IDP90893 gene: ubiE; ubiquinone/menaquinone biosynthesis methyltransferase [Yersinia pestis CO92] YPO3781 [Yersinia pestis CO92]  ali follow..  12  14................................................................................................RTVAKEQKEGMVAEVFHSVAAKY-----------------LMNDLMSFGVHRIWKRFTVDCSGVRRGQRVLDLAGGTGDLTAKFSRLQGEVILADINESMLRMGREKLRDKGINVSYVQANAEALPPDNFFDCITISFGLRNVTEKEKALRSMFRVLKPGGRLLV............................................. 168
54 -11.100IDP01412 cyclopropane-fatty-acyl-phospholipid synthase VC1122 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  104....................................................EAYMEGWWESPNLTALMQLMAANLGTLDKLESQSSPVTQWLNRFTHWLKRNTIDQAKDNIHYDLGNELYQLFLDEEMLYSSALFTQPELSLEQAQQAKMQRLCEQLQLKPTDHVLEIGTGWGAMAIYMAQHGCKVTTTTISEEQYAYAQQKITALGLNITLLKQDYRLLS--GQYDKLVSIEMIEAVGKAYLPTFLSQCYALKPRGKMAIQAITIADQRYESYSNNVDFIQKYI.................... 341
55 -11.000IDP00974 gene: hemK; N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase STM1775 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  11  1.................................................MDFQHWLHEAVNQLRDSDSPRRDAEILLEYVTGKGRTYIMAFGETPLTDVQQQQLADLLQRRKQGEPIAYLGLREFWSLPLFVSPATLIPRPDTECLVEQALARLPV-----KTCRILDLGTGTGAIALALACEDCEVTAVDRMPDAVALAIRNAEHLAINVRILQSCWFSALSGQQFDMIVS----PYIDAQDPHLSEGDVRFEPRSALV.............................................. 208
56 -10.900IDP00532 gene: cfa; cyclopropane fatty acyl phospholipid synthase YPO2390 [Yersinia pestis CO92]  ali follow..  10  63..........................................................MDGWWECDRLDIFFQRVLQAGLEHKLPRHFKDTLRIAAARVINLQSKRRAWIVGNDLFTQILDPNMQYSC------AYWKEATSLEQAQEHKLQMICEKLQLAPGMKLLDIGCGWGGLAAYAARHGVSVSGVTISVEQQKLAQQRCEGLDVS--ILLQDYRDLN--EQFDRIVSVGMFEHVGPKNYSTYFKVVNRN.................................................... 256
57 -10.900IDP90289 arginine methyltransferase protein, putative [Toxoplasma gondii ME49] TGME49_094270 [Toxoplasma gondii ME49]  ali follow..  89.VPLAHVQRLSMKTALCCPLATDTTGGYSAVAAGRTGKLPGQAAKGISSGTDADAASEFDAVFGLEFKDEATANAFFTEWSRVRSPATLGSAEVSPASASAART-KEQRKRMGGHMGDMDASVVETYFQYYGKMANQMNMLQDTVRTTTYQRAIVENRADFEGKTVMDVGAGSGILSFFAAQAGAKVYAVEASNMAATIALLCKGNPSLGINKPLESIEDSEVPEKVDVLIS-RMIETYLSARDRFLKPGGKMFPSKSSLYIAPFVD....................................... 368
58 -10.100IDP04360 putative protoporphyrinogen oxidase [Yersinia pestis CO92] YPO2018 [Yersinia pestis CO92]  ali follow..  7LSLAAARFTHSDSPKRDAEILLSFVTGKARTETEITAEQLLWLETLANRREQGEPIAYLVGEREFWSLPLSVSSATLIPRPDTECLVEQALARLPAM-----------------------------------------------------------------PCRILDLGTGTGAIALALATEDCAVIAVDINADAVALARHNAEKLTINVCFLQGSWFE-PVSGRFALIAS----PYIDANDPHLNEGDVRYEPHSALV.............................................. 207
59 -9.720IDP06499 hypothetical protein spr1856 [Streptococcus pneumoniae R6] NP_359448 [Streptococcus pneumoniae R6]  ali follow..  1...................................................................................................................................................................................................MLEQARLKVEQQAINIQFLEQDLPKNPLEKEFDCLAVSRVLHHMPDLDAALSLFHQHLKEDGKLIIA............................................ 68
60 -9.300IDP91765 ThiF family protein [Yersinia pseudotuberculosis IP 32953] YPTB1885 [Yersinia pseudotuberculosis IP 32953]  ali follow..  152.ESNLTRATIFKEDQI---GSLKVASLKENISERNKTCGVEVLPLLLNEENMDKFNAFFSECDIIVLSADCSHEVIRYLATRKSCVWQKRLLINPDTYETLFYGYKITEDNIEMKCDT--LKPGDETVFNKIAGYYREHRDTSSTNKTVLDKSVARILTENKYNSVLDVGCGIGTYCRMLDGKSSYIVGLDINSSMLSTARELGG----SIEYSNGEFMNYDDNHSFDLVIFSLVLDHVENFVDYILKAKSLLHKGGSIVCIIP.......................................... 485

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Veeramalai M, Ye Y, Godzik A. TOPS++FATCAT: fast flexible structural alignment using constraints derived from TOPS+ Strings Model. BMC Bioinformatics. 2008 Aug 31;9(1):35