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Query: IDP00328 gene: murI; glutamate racemase Cj1652c [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819], from CSGID

Results of FFAS03 search in H.sapiens
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKIGVFDSGVGGLSVLKSLYEARLFDEIIYYGDTARVPYGVKDKDTIIKFCLEALDFFEQFQIDMLIIACNTASAYALDALRAKAHFPVYGVIDAGVEATIKALHDKNKEILVIATKATIKSEEYQKRLLSQGYTNINALATGLFVPMVEEGIFEGDFLQSAMEYYFKNITTPDALILACTHFPLLGRSLSKYFGDKTKLIHSGDAIVEFLKERENIDLKNHKAKLHFYASSDVESLKNTAKIWLNLLRKLast
1 -7.760sp|Q13224|NMDE2_HUMAN(removed signalp:1-28) Glutamate [NMDA] receptor subunit epsilon-2 OS=Homo sapiens GN=GRIN2B PE=1 SV=3  ali   12  7IGIAVI---LVGTSDEVAIKDAHEKDDFHHLSVVPRVELVAMNETDPKSIITRICDLMSDRKIQGVVFA-QEAIAQILDFISAQTLTPILGI--HGGSSMIMADKDESSMFFQFGPSIEQQASVMLNIMEEYDWYIFS-----IVTTYFPGYQDFVNKIRSTIENSFVGWELEEVLLLDMSLDDGDSKIQNQLLQSPIILLYCTKEEATYIFEVANSVGLTGYGYTWIVPSLVAGDTDTVPAEF...... 245
2 -7.090sp|Q92771|DDX12_HUMAN Probable ATP-dependent RNA helicase DDX12 OS=Homo sapiens GN=DDX12 PE=2 SV=3  ali   7  94................................HITKIYHCSRTHSQLAQFVHEVKKSPFGKDVRLVSLGSRQNLC-----------------VNEDVRSLGSVQLINNRCVDMQRSRHEKKKGAEEEKPKRRRQEK--QAACP---------FYNHEQMGLLRDEALAEVKDMEQLLLGCPYY-LLHAATRQAAGDQVVIIDEAHNLIDTTTSMHSVEVSGSQ........................... 283
3 -7.090sp|Q86U28|ISCA2_HUMAN Iron-sulfur cluster assembly 2 homolog, mitochondrial OS=Homo sapiens GN=ISCA2 PE=1 SV=2  ali follow..  15  70LRLQVEGGGCSGFQYKFSLDTVINPDDRVFEQGGARVVVDSDSLAFVKGAQVDFSQELIRSSFQVL--GCSCGSSFSIK........................................................................................................................................................................... 153
4 -6.820sp|Q02338|BDH_HUMAN D-beta-hydroxybutyrate dehydrogenase, mitochondrial OS=Homo sapiens GN=BDH1 PE=1 SV=3  ali follow..  11  64......DSGFGGFLVFAGCLMKDKGHDGV--DRLRTVQLNVCSSEEVEKVVEIVRSSLKDPEKGMWGLVNNAGISTSLETYKQVAEVNLWGTVRPLIRRAKGRVVNISSMLGRMANPARSPYCITKFGVEAFSDLRYEMYPLGVKVSVVEPGNFIAATSLYSPESIQAIAKKMWEELPEVVRKDYGKKYFDEKIAKMETYCSSGSTDTSPVIDAVTHALTATTPYTRYHPMDYYWWLRMQIMTHL..... 332
5 -6.660sp|Q8NEC7|GSTCD_HUMAN Glutathione S-transferase C-terminal domain-containing protein OS=Homo sapiens GN=GSTCD PE=1 SV=2  ali   12  1........GGGHVGIV--LAHMLPSCQVTLI-KELSLIRAKKRSDEIWFIQANMEYFTGMFNIGVALHACGVATDMVIEHIKTRASFVTCPCCYGFIQNTSKFNFPKSEQFKKTLSYKILCRFADQTAVQLPPQRRLIGKQCMCLVDLDRARAAEECGYSVQVISMEPESCSPKNNMI........................................................................ 178
6 -6.660sp|Q14957|NMDE3_HUMAN(removed signalp:1-19) Glutamate [NMDA] receptor subunit epsilon-3 OS=Homo sapiens GN=GRIN2C PE=2 SV=3  ali   8  11MTVAVFSSS----PPQAQFRARLTPQSFLDLPLEIQPLTVGVNTTNPSSLLTQICGLLGAAHVHGIVFE-TEAVAQILDFISSQTHVPILSI--SGGSAVVLTPKEPGSAFLQLGVSLEQQLQVLFKVLEEYDWSAFA-----VITSLHPGHALFLEGVRAVADASHVSWRLLDVVTLELGPGGPRARTQRLLLDAPVFVAYCSREEAEVLFAEAAQAGLVGPGHVWLVPNLALGSTDAPPATF...... 250
7 -6.630sp|Q1KMD3|HNRL2_HUMAN Heterogeneous nuclear ribonucleoprotein U-like protein 2 OS=Homo sapiens GN=HNRNPUL2 PE=1 SV=1  ali   10  6LMVGL--PGSGKTQWALKYAKENPEKRYNVLGETVLNQM-DLLVQQASQCLSKLVQIASRTKRNFILDQCNVYNSGQRRKLLLFKTFSRVVVVVPNEEDWKKRLELRKEVEGDDVPESIMLE................................................................................................................................ 141
8 -6.630sp|Q00839|HNRPU_HUMAN Heterogeneous nuclear ribonucleoprotein U OS=Homo sapiens GN=HNRNPU PE=1 SV=6  ali   11  51MMIGL--PGAGKTTWVTKHAAENPGKYNILGTNTIMDKM-NTLLQRAPQCLGKFIEIAARKKRNFILDQTNVSAAAQRRKMCLFAGFQRAVVVCPKDEDYKQRTQKKAEVEGKDLPEHAVLK--MKGNFTLPEVAECFDE-----ITYVE---LQKEEAQKLLEQYKEESKK.............................................................................. 225
9 -6.400sp|Q96FC9|DDX11_HUMAN Probable ATP-dependent RNA helicase DDX11 OS=Homo sapiens GN=DDX11 PE=1 SV=1  ali   7  75................................HITKIYYCSRTHSQLAQFVHEVKKSPFGKDVRLVSLGSRQNLC-----------------VNEDVKSLGSVQLINDRCVDMQRSRHEKKKGAEEEKPKRRRQEK--QAACP---------FYNHEQMGLLRDEALAEVKDMEQLLLGCPYY-LLHAATRQAAGDQVVIIDEAHNLIDTITGMHSVEVSGSQ........................... 264
10 -6.390sp|O60391|NMD3B_HUMAN(removed signalp:1-22) Glutamate [NMDA] receptor subunit 3B OS=Homo sapiens GN=GRIN3B PE=2 SV=2  ali   7  15VRLGLLPRAPLARARARAALARAALAPRLPHNLSLELVVAAPPARDPASLTRGLCQALVPPGVAALLAF-ARPELLQLHFLAAATETPVLSLLRREARAPLGAPNPFHLQL--WASPLETLLDVLVAVLQAHAWEDVGLALC------------RTQDPGGLVALWTSRAGRPPQLVLDLSRRDTGDAGLRARLAPMAAPVGGEAPVPAAV....................................... 214
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;