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Query: IDP04224 gene: ipaC; IpaC, secreted by the Mxi-Spa secretion machinery, required for entry into epithelial cells [Shigella flexneri] CAC05802 [Shigella flexneri], from CSGID

Results of FFAS03 search in H.sapiens
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MEIQNTKPTQTLYTDISTKQTQSSSETQKSQNYQQIAAHIPLNVGKNPVLTTTLNDDQLLKLSEQVQHDSEIIARLTDKKMKDLSEMSHTLTPENTLDISSLSSNAVSLIISVAVLLSALRTAETKLGSQLSLIAFDATKSAAENIVRQGLAALSSSITGAVTQVGITGIGAKKTHSGISDQKGALRKNLATAQSLEKELAGSKLGLNKQIDTNITSPQTNSSTKFLGKNKLAPDNISLSTEHKTSLSSPDISLQDKIDTQRRTYELNTLSAQQKQNIGRATMETSAVAGNISTSGGRYASALEEEEQLISQASSKQAEEASQVSKEASQATNQLIQKLLNIIDSINQSKNSAASQIAGNIRALast
1 -7.160sp|Q9BVG8|KIFC3_HUMAN Kinesin-like protein KIFC3 OS=Homo sapiens GN=KIFC3 PE=1 SV=3  ali   11  120.............................................................................................................................................................................QALSESQARNQHLQEQVAMQRQVLKEMEQQLQSSHQLTARLRAQIAMYESELERAHGQMLEEMQSLEEDKNRAIEEAFARAQVEMKAVH----------ENLAGVRTNLLTLQPALRTLTNDYNGLKRQVRGFPLLLQEALRSVKAEIGQAIEEVNSNNQELLRKYRR---ELQLRKKNELVRLKGNIRV 298
2 -6.800sp|P25391|LAMA1_HUMAN(removed signalp:1-15) Laminin subunit alpha-1 OS=Homo sapiens GN=LAMA1 PE=1 SV=2  ali   11  53....................................................................................................................VYRAEDHAAEFQRLADVLYLENIRNVSLNATSAAYYNIQSLIEESARDAHRTVTETSLLSESLVSNGKAAVQRLKEGNNLSRKLPGIALELSELRN----------NRFQENAVEITRQTNESLLILRAIPKGIRDKGAKTKELATSASQSAVSTLRDVAGLSQELLNTSASLSRVNTTLRETHQLLQDSTMATLLAGRKVANLLFDRLKPLKMLEENLSRNLSEIKLLISQARKQAAS........ 300
3 -6.430sp|Q8IY18|SMC5_HUMAN Structural maintenance of chromosomes protein 5 OS=Homo sapiens GN=SMC5 PE=1 SV=2  ali   1.............................................................................................................................................................................EGQIPVTCRIEEMENERHNLEARIKEKATDIKEASQKCKQKQDVIERKDKHIEELQQALIVKQNEELDRQRRITRKMIEDLQNELKTTENCENLQ----PQIDAITNDLRRIQDEKALCEGEIIDKRRERETLEKEKKSVDDHI-VRFDNLMNQKEDKLRQRFRDTYDAVLWLRNNRDKFKQRVCEPI.. 185
4 -6.310sp|Q9NTG1|PKDRE_HUMAN Polycystic kidney disease and receptor for egg jelly-related protein OS=Homo sapiens GN=PKDREJ PE=2 SV=2  ali   10  2.........................................................................................................................................................................................................................................................................................IGQVVMTITKLTQKPSEFTDAQKRATMRVWQANQALQEYQQKDKRFRSEQIEIVSTGILMSLSNILKMTSYVIESLSDTI.. 91
5 -6.300sp|O60499|STX10_HUMAN Syntaxin-10 OS=Homo sapiens GN=STX10 PE=1 SV=1  ali follow..  2....................................................................................................SLEDPFFVVRGEVQKAVNTARGLYQRWCE-----LLQESAAVGREELDWTTNELRNGLRS-----------IEWDLEDLEETIGIVEANPGKFKLPAGDLQERKVFVERMREAVQEMKDHMVSPTAVAFLERNNREILAGKPAAQKSPSDLLDASAVSATSRYIEEQQATQQLIMDEQDQQLEMVSGSIQVLKHMSGRVGEELDEQGIMLDAFAQEM------------DHTQSRMDGVLRKLAKVSHMTSD........... 225
6 -6.290sp|Q9BZD4|NUF2_HUMAN Kinetochore protein Nuf2 OS=Homo sapiens GN=NUF2 PE=1 SV=2  ali follow..  204...............................................................................................................VLQEGNSQKKSNISEKTKRLNELKLSVVS------LKEIQESLKTKIVDSPEKLKNYKEKMKDTVQKLKNARQEVVEKYEIYGDSVDCLPSCQLEVQLYQKQDLSDNREKLASILKESLNLEDQIESDESELKKLKTEENSFKRLMIVKKEKLATAQFKINKKHEDVKQYKRTVIEDCNKVQEKRGAVYERVTTINQEIQKIKLGI-QQLKDAAEREKLKSQEIFLNLKTALEKYHDGIEKAAEDSYAKIDE 450
7 -6.230sp|P02649|APOE_HUMAN(removed signalp:1-18) Apolipoprotein E OS=Homo sapiens GN=APOE PE=1 SV=1  ali follow..  21......................................................................................................................QSGQRWELALGRFWDYLRWVQTLSEQVQEELLSSQVTQELRALMDETMKELKAYKSELEELTPVAEETRARLSK--ELQAAQARLGADMEDVCGRLVQYRGEVQAMLGQSTEELRVRLASHLRKLRKRLLRDADDLQKRLAVAGAREGAERGLSAIRERLGPLVEQGRVRAATVGSLAGQLQERAQAWGERLRARMEEMGSRTRDRLDEVKEQVAEVRAKLEEQAQQIRLQAEAFQARLKSWFEP 267
8 -6.220sp|P26232|CTNA2_HUMAN Catenin alpha-2 OS=Homo sapiens GN=CTNNA2 PE=1 SV=5  ali   12  74.............................................................................................................................................................................................................................................QLPQEEKAKIAEQVEIFHQEKSKLDAEVAKWDDSGNDIIVLAKQMCMIMMEMTDFTRGKGPLKNTSDNAAKKIAEAGSRMDKLARAVADQCPDS--ACKQDLLAYLQRIALYCHQL--NICSKVKA 197
9 -6.210sp|Q16363|LAMA4_HUMAN(removed signalp:1-27) Laminin subunit alpha-4 OS=Homo sapiens GN=LAMA4 PE=1 SV=4  ali   1.......................................................................................................................................................................................ENIVNYVSEANETAEFALNTTDRIYD----AVSGIDTQIIYHKDESENLLNQARELQAKAESSSDEAVADTSRRVGGALARKSALKTRLSDAVKQ-QRLGQSRLITEEANRTTMEVQQATAPMANNLTNWSQNLQHFDSSAYNTAVNSARDAVRNLTEVVPQLLDEQKRPASNVSASIQR 190
10 -6.180sp|Q16787|LAMA3_HUMAN(removed signalp:1-36) Laminin subunit alpha-3 OS=Homo sapiens GN=LAMA3 PE=1 SV=2  ali   3.......................................................................................................................................VEEAEKHARSLQELAEEIKRNASGDELVRCAVDAATAYENI-------NAIKAAEDAANRAASASESALQTVIKED-------PRKAKTLSSNSDKLLNEAKMTQKKLKQEVSPALNNLQQTLNIVTVQKEVIDTNLTTLRDG-SMVRKANDITDEVLDGLNPIQTDVERIKDTYGRTQNEDFKKALTDADNSVNKLTNKLPDLWRKIESI-NQQLLPLGNISDNMDR 236

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Wooley JC, Godzik A. Probing metagenomics by rapid cluster analysis of very large datasets. PLoS ONE. 2008;3(10):e3375. Epub 2008 Oct 10.