FFAS03 results for IDP04225

Query: IDP04225 gene: ipaB; IpaB, secreted by the Mxi-Spa secretion machinery, required for entry into epithelial cells [Shigella flexneri] CAC05803 [Shigella flexneri], from CSGID

Results of FFAS03 search in H.sapiens
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.

						. 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 . 140 . 150 . 160 . 170 . 180 . 190 . 200 . 210 . 220 . 230 . 240 . 250 . 260 . 270 . 280 . 290 . 300 . 310 . 320 . 330 . 340 . 350 . 360 . 370 . 380 . 390 . 400 . 410 . 420 . 430 . 440 . 450 . 460 . 470 . 480 . 490 . 500 . 510 . 520 . 530 . 540 . 550 . 560 . 570 . 580
#	Score	Template	Links and tools	%id	First	MHNVSTTTTGFPLAKILTSTELGDNTIQAANDAANKLFSLTIADLTANQNINTTNAHSTSNILIPELKAPKSLNASSQLTLLIGNLIQILGEKSLTALTNKITAWKSQQQARQQKNLEFSDKINTLLSETEGLTRDYEKQINKLKNADSKIKDLENKINQIQTRLSELDPESPEKKKLSREEIQLTIKKDAAVKDRTLIEQKTLSIHSKLTDKSMQLEKEIDSFSAFSNTASAEQLSTQQKSLTGLASVTQLMATFIQLVGKNNEESLKNDLALFQSLQESRKTEMERKSDEYAAEVRKAEELNRVMGCVGKILGALLTIVSVVAAAFSGGASLALAAVGLALMVTDAIVQAATGNSFMEQALNPIMKAVIEPLIKLLSDAFTKMLEGLGVDSKKAKMIGSILGAIAGALVLVAAVVLVATVGKQAAAKLAENIGKIIGKTLTDLIPKFLKNFSSQLDDLITNAVARLNKFLGAAGDEVISKQIISTHLNQAVLLGESVNSATQAGGSVASAVFQNSASTNLADLTLSKYQVEQLSKYISEAIEKFGQLQEVIADLLASMSNSQANRTDVAKAILQQTTA	Last
1	-12.300	`sp\|Q96LR9\|APLD1_HUMAN Apolipoprotein L domain-containing protein 1 OS=Homo sapiens GN=APOLD1 PE=2 SV=2`	`ali follow..`	15	38	.....................................................................................................................................................................................................................................................................AAREPHGPDALRRFQGLLLDRRGRLHGQVLRLREVARRLERLRRVAGSSLSATGALAAIVGLSLSPVTLGTSLLVSAVGLGVATAGGAVTITS--DLSLIFCNSRELRRVQEIAATCQDQMREILSCLEFFCRWQGCGDRQLLQCGRNASIALYNSVYFIVFFGSRGFLIPRRAEGDTKVSQAVLKAKIQKLAESLESCTGALDEESRVQLCTKSSRGHDLKISADQRAGL........................................................................................	277
2	-12.000	`sp\|Q9BWW8\|APOL6_HUMAN Apolipoprotein L6 OS=Homo sapiens GN=APOL6 PE=2 SV=1`	`ali follow..`	10	29	.....................................................................................................................................................................................................................................................................ELQDGDLSPEEKIFLREFPRLKEDLKGNIDKLRALADDIDKTHKMVATSTAVISGVMSLLGLALAPATGGGSLLLSTAGQGLATAAGVTSIVS--GTLERSKNKEAQARAEDILPTYDQEDREDEEEKADYVTAAGKIIYNLRNTLKYAKKNVRAFWKLRANPRLANATKRLLT----------TGQVSSRSRVQVQKAFAGTTLAMTKNA----------RVLGGVMSAFSLGYDLA-TLSKEWKHLKEGARTKFAEELRAKALELERKLTELTQLYKSLQQKVRSRARGVGKDLTGTCETEAYWKELREHV......	324
3	-11.700	`sp\|Q9BQE5\|APOL2_HUMAN Apolipoprotein L2 OS=Homo sapiens GN=APOL2 PE=1 SV=1`	`ali follow..`	12	51	..............................................................................................................................................................................................................................................................ELRKALNKLASHMVMKDKNRHDKDQQHRQRKLRALAEEV-EQVHRGTTIANVVSNSVGTTSGILTLLGLGLAPFTEGISFVLLDTGMGLGAAAAVAGITC--SVVELVNKLRARAQARNLDQSGTNVAKVMKEFVGGNTPNVLTLVDNWYQVTQGIGRNIRAIRRARANPQLGAYAPPPHI----------IGRISAEGGEQVERVVEGPAQAMSRGT----------MIVGAATGGILLLLDVVSLAYES-------------------KHLLEGAKSESAEELKKRAQELEGKLNFLTKIHEMLQPGQDQ..............	337
4	-11.500	`sp\|Q9BWW9\|APOL5_HUMAN Apolipoprotein L5 OS=Homo sapiens GN=APOL5 PE=1 SV=1`	`ali follow..`	14	89	.....................................................................................................................................................................................................................................................................SMPDGNLSEEEKLFLSYFPLHKFELEQNIKELNTLADQVDTTHELVASSSGAVSGVMNILGLALAPVTAGGSLMLSATGTGLGAAAAITNIVT--NVLENRSNSAARDKASRLGPLTTSHEAFGGINWSEIEAAGFCVNKCVKAIQGIKDLHAYQMAKSNSGFMAMVKNFVAKRHIPFWTARG-VQRAFEGTTLAMTNGA---------------------WVMGAAGAGFLLMKDMS-SFLQSWKHLEDGARTETAEELRALAKKLEQELDRLTQHHRHLPQKASQTCSSSRGRAVRGSRVVKPEGSRSP........	380
5	-11.400	`sp\|O14791\|APOL1_HUMAN(removed signalp:1-27) Apolipoprotein L1 OS=Homo sapiens GN=APOL1 PE=1 SV=5`	`ali follow..`	12	83	..............................................................................................................................................................................................................................................................ELRKALDNLARQMIMKDKNWHDKGQQYRNRRLRALADGV-QKVHKGTTIANVVSGSLSISSGILTLVGMGLAPFTEGGSLVLLEPGMELGITAALTGITS--STMDYGKKWWTQAQAHDLVIKSLDKLKEVREFL---GENISNFLSLAGNTYQLTRGIGKDIRALRRARANLQSVPHASASRPRVTEPISAESG-----EQVERVNEPSILEMSRGV----------KLTDVAPVSFFLVLDVV-YLVYESKHLHEGAKSE------------------TAEELKKVAQELEEKLNILNNNYKILQADQE...............	370
6	-11.300	`sp\|O95236\|APOL3_HUMAN Apolipoprotein L3 OS=Homo sapiens GN=APOL3 PE=2 SV=3`	`ali follow..`	12	143	.....................................................................................................................................................................................................................................................................QKDEQFREWFLKEFPQVKRKIQESIEKALANGIEEVHRGCTISNVVSSSTGAASGIMSLAGLVLAPFTAGTSLALTAAGVGLGAASAVTGITT--SIVEHSYTSSAEAEASRLTATSIDRLKVFKEVMRDITPNLLSLLNNYYEATQTIGSEIRAIRQARARARLPVTTWRISAGSGGQ-----AERTIAGTTRAVSRGA---------------------RILSATTSGIFLALDVV-NLVYESKHLHEGAKSA------------------SAEELRRQAQELEENLMELTQIYQRLNPCHTH..............	402
7	-10.000	`sp\|Q9BPW4\|APOL4_HUMAN(removed signalp:1-21) Apolipoprotein L4 OS=Homo sapiens GN=APOL4 PE=2 SV=3`	`ali follow..`	12	57	..............................................................................................................................................................................................................................................................ALYEALKNLTPYVAIEDKDMQQKEQQFREWQIRWKIQESIERLRVANEIEKV---IANVVSGILSVIGVMLAPFTAGLSLSITAAGVGLGIASATAGIAS--SIVENTYTRSAELTASRLTA---------------STDQLEALRDILRDITPNVLSFALDFD--EATKMIANDVHTLRRSKATVGRPLIAWRYVPINVVETLRTRGAPTRIVRKVA----------RNLGKATSGVLVVLDVV-NLVQDSLDLHKGAKSE------------------SAESLRQWAQELEENLNELTHIHQSLKA..................	329
8	-9.050	`sp\|Q96SB8\|SMC6_HUMAN Structural maintenance of chromosomes protein 6 OS=Homo sapiens GN=SMC6 PE=1 SV=2`	`ali`	11	1	...........................................................................................EDRAARLDRKMEEQQVRLNEAEQKYKDIQDKLEKISEETNARAPECMALKADVVAKKRAYNEAEVLYNRSLNEYKALKKDDEQLCKRIEELKK------STDQSLEPERLERQKKISWLKERVKAFQNQENSVNQEIEQFQQAIEKDKEEHGKIKREE------------LDVKHALSYNQRQLKELKDSKTDRLKRFGPNVPALLEAIDDAYRQGHFTYKPVGPLGACIHLRDPELALAIESCLKGLLQAYCCHNH........................................................................................................................................................................................................................................	239
9	-8.480	`sp\|P11047\|LAMC1_HUMAN(removed signalp:1-35) Laminin subunit gamma-1 OS=Homo sapiens GN=LAMC1 PE=1 SV=3`	`ali`	9	1	................................................................................................EALRKIPAINQTITEANEKTREAQQALGSAAADATEAKNKAHEAERIASAVQKNATSTKAEAERTFAEVTDLDN---EVNNMLKQLQEAEKELKRKQDDADQDMMMAGMASQAAQEAEINARKAKNSVTSLLSIINDLLEQLGQLDTVDLNKLNEIEGTLNKAKDEMKVSDLDRKVSDLENEAKKQEADYNRDIEEIMKDIRNLEDIRKTLGCFNTP...........................................................................................................................................................................................................................................................................	219
10	-8.140	`sp\|O95347\|SMC2_HUMAN Structural maintenance of chromosomes protein 2 OS=Homo sapiens GN=SMC2 PE=1 SV=2`	`ali`	12	7	...........................................................................................QRVNTKSQSAFDLKKKNLACEESKRKELEKNMVEDSKTLAAKEKEVKKITDGLHALQEASNKDAEALAAAQQHFNAV------SAGLSSNEDGAEATLAGQMMACKNDISKAQTEAKQAQMKLKHAQQELKNKQAEVKKMDSGYRKDQEALEAVKRLKEKLEAEMKKL-EENKEESLLEKRRQLSRDIGRLKETYEALLARFPNLRFAYKDPEK----RNCVKGLVASLISVKDTSATTALELVAGERLYNVVVDTE-----TGKKLLERGEL---RYTIIPL---------NKISARCIAPETLRVAQNLVG................................................................................................................................................................................	299

FFAS is supported by the NIH grant R01-GM087218-01

jobs submitted since Jan 1, 2011

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