current user: public
If you have questions about the server, please let us know.

Query: IDP90401 hypothetical protein [Chlamydia trachomatis D/UW-3/CX] CT_579 [Chlamydia trachomatis D/UW-3/CX], from CSGID

Results of FFAS03 search in H.sapiens
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    .  260    .  270    .  280    .  290    .  300    .  310    .  320    .  330    .  340    .  350    .  360    .  370    .  380    .  390    .  400    .  410    .  420    .  430    .
# Score Template Links and tools%idFirst MTTGVRGDNAPDPSLLAQLTQNANSASAASTGKNGQVAGAKQENVDASFEDLLQDAQGTGGSKKATANQTSKSGKSEKAQASSGTSTTTSVAQASQTATAQAVHGARDSGFNSDGSATLPSPTGTEVNGVVLRKGMGTLALMGLIMTLLAQASAKSWSSSFQQQNQAIQNQVAMAPEIGNAIRTQANHQAQATELQAQQSLISGITNIVGFAVSVGGGILSASKSLGGLKSAAFTNETASATTSATSSLAKTATSALDDVAGTATAVGAKATSGAASAASSAATKLTQNMAESASKTLSQTASKSAGGLFGQALNTPSWSEKVSRGMNVVKTQGTRAAKFAGRALSSAMNISQMVHGLTAGIDGIVGGVIGAQVAQEQRMAGMAEARAEELKSLNSVQAQYASQAQQLQEQSQQSFNSALQTLQSISDSALQTTASMFNLast
1 -5.670sp|Q2M3G4|SHRM1_HUMAN Protein Shroom1 OS=Homo sapiens GN=SHROOM1 PE=1 SV=1  ali   10  121..................................................GLLDGLIPLAEVRAAMRPACGEAGEEAASTFEPGSYQFSFTQLLPAPREETRLENPATHPVLDQPCGQGLPAPNNSIQ----KK----VELAARLQKML---------QDLHTEQERLQGEAQAWARRQAALEAAVRQACAPQELERFSRFMADLERVLGLLLLLGSRLARVRRALARAASDSDPDEQAS....................................................................................................................................................................................................... 294
2 -5.420sp|O94915|FRYL_HUMAN Protein furry homolog-like OS=Homo sapiens GN=FRYL PE=1 SV=2  ali   9  1.................................................KENIEESYVHLDIYSGLNSHLNRQHHRLESRYSSSSGGSYEEEKSDSMPLYSN---WRLKVMEHNQGEPLPFPPASPLVDYV---HRCNIAVILLTDLIIDHSVKVEWGSYL--------------HLLLHAIFIGFDHCHPEVYEHCKRLLLHLLIVMG--IRTVASVLLRNKEFNEPRVLTVKQVAHLDYNFTAGINDFIPDYQPSPMTDSGLSSSSTSSSISLGNNSAAISHLHTTILNEVDISVEQDGKVKTLMEFITSRKRGPLWNEDVS-------------------SIKSAEQLTTFLKHVV................................................................................ 292
3 -5.100sp|Q9UQ35|SRRM2_HUMAN Serine/arginine repetitive matrix protein 2 OS=Homo sapiens GN=SRRM2 PE=1 SV=2  ali   19  5.SSGSSSSDSEGSSLPVQ-VALKRVPSPTPAPKEAVREGRPPEPTPA------KRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSPSPAKPGPQ............................................................................................................................................................................................................................................................................................................................................ 107
4 -4.960sp|Q8NFZ0|FBX18_HUMAN F-box only protein 18 OS=Homo sapiens GN=FBXO18 PE=1 SV=2  ali   12  1......................................................HLSVPCTRPREARQEAEDSTSRLSAESGETDQDAGDVGPDPIPDSYYGLLGTLPCQEALSHICSLPSE--------VLRHVFAFLPVEDLYWN--LSLVCHLWREIISDPL.................................................................................................................................................................................................................................................................................. 101
5 -4.910sp|Q5T1A1|DCST2_HUMAN DC-STAMP domain-containing protein 2 OS=Homo sapiens GN=DCST2 PE=2 SV=2  ali   12  104.....................................................LDEEKGPQQRKHGQQPLPEAHQPVSILTSPEPHRPPETSSATKGAPTPASEPSVPLSPPSLPDPSHPPPK............................................................................................................................................................................................................................................................................................................................ 173
6 -4.720sp|Q9BV81|TMM93_HUMAN Transmembrane protein 93 OS=Homo sapiens GN=TMEM93 PE=1 SV=1  ali follow..  12  1......................................................................................................................................................................................................................................................................................................................................MAAVVAKREGPPFISEAAVRGNAAVLDYCRTSVSALSGATAGILGLT.................................................................. 47
7 -4.590sp|Q93008|USP9X_HUMAN Probable ubiquitin carboxyl-terminal hydrolase FAF-X OS=Homo sapiens GN=USP9X PE=1 SV=3  ali   10  1..........................................................................................................................................LFFITLLFTVLGSTARERAKHSGDNSNINVPNAEVLLNNEIDWLKRIRDDVKRTGETGIEETILEGHLGVTKELLAFQTSHIGCEKGGANLIKELIDDFIFPASNVYLQYMRNGELPAEQAIPVCGSPPTINAGFELLVALAVGCVRNLKQIVDSLTEMYYIGTAITTCEALTEWEYLPPVGPRPPKGFVGLKNAGATC-------MNSVIQQLYMIPSIRNGI-------------LAIEGTGSDVDDDMSGDEKQDNESNVDPRDDVFTEDRKEYNIGVLRHLQVI............. 300
8 -4.590sp|Q6ZRQ5|MMS22_HUMAN Protein MMS22-like OS=Homo sapiens GN=MMS22L PE=1 SV=3  ali   10  14..........................................................................................................................................................AQLPSVLIDELHGLLLYIGHLSELPSVNIGAFVNQNQIKLFPPSWHLLHLHLDIHWLVLEI---LYMLGEKLKQVVYGHQFMNLASDNLTNISLFEEHCETLLCDLISLSLNRYDKVRSSESLMSDQCPCLCIKELWVLLIHLLDHRSKWFVSESFWNWLNK---KSSDRRRSSMPVIQSRDPLGFSWWIITHVASFYKFRHGVPDEMRKVESNWNFVEELLKKSISVQGVILEEQLRTLCDFWEPNIAIVTILWENLNSSFSISWLPFKGLAN........... 300
9 -4.560sp|O76024|WFS1_HUMAN Wolframin OS=Homo sapiens GN=WFS1 PE=1 SV=2  ali   14  45...............................................................................................................................HLVVLNVSVPCLLYVYLLYLFFRMAQLRNFKGTYC----------YLVPYL--VCFMWCELSVVILLESTGLGLLRASIGYFLFLFAL---ILVAGLALVGVLQFARWFTSLELTKIAVTVAVCSVPLLLRWWTKASFSVVGMVKSLTRSSMVKTAIVLFCWFYVYRSEGMKVYNSTLTWQQYGALCGPRAWKET-----NMARTQ--LCSHLEGHRVTKYVRVTDIDNSAESAINML.......................................................................... 273
10 -4.510sp|Q8TF72|SHRM3_HUMAN Protein Shroom3 OS=Homo sapiens GN=SHROOM3 PE=1 SV=2  ali   12  61.............................................................KENSVKRKAIQRTVSSSGCEGKRNEDKEAVSMLVNCPAYYSVSAPKAELLNKIKEMPAEVNEEEEQADVNEKKAELIGSLTHKLETL-------------QEAKGSLLTDIKLNNALGEEVEALISELCKPNEFDKYRMFIGDLDKVVNLLLSLSGRLARVENVLSGLGEDASNEE---------RSSLYEKRKILAGQHEDARELKENLDRRERVVLGILANYLSEEQLQDYQHFVKMKST---------LIEQRKLDDKIKLGQEQVK............................................................................................................ 300
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 1 6   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Dunbrack RL Jr, Dunker K, Godzik A. Protein structure prediction in biology and medicine. Pac Symp Biocomput. 2000;(12):93-4.