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Query: IDP00597 gene: murI; glutamate racemase YPO3909 [Yersinia pestis CO92], from CSGID

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MATKPQDANTTSREAITSKADSPPRPTALIFDSGVGGLSVYQEIRQLLPDLHYIYAFDNVAFPYGEKSGEFIVERVLEIVTAVQQRHPLAIVVIACNTASTVSLPALRERFAFPVVGVVPAIKPAVRLTRNGVVGLLATRATVHASYTLDLIARFATDCKIELLGSSELVEVAETKLHGGVVPLEVLKKILHPWLSMREPPDTIVLGCTHFPLLTEELAQVLPEGTRMVDSGAAIARRTAWLISSQENVISSQDENIAYCMALDEDTDALLPVLQSYGFPKLQKLPILast
1 -3.790PB012991 Q2RHT0_MOOTA/1-175 PB012991; Pfam-B_12991;  ali follow..  13  26.................NFLKGVFLLRIAVVDGQGGGIHITARLRQELPPEVEILALGTNAAATVAMIKAGANEGATGERAIIYNAPRVEAITGSLAIILADAMLGELTPAMAAAIAASPARKFLLPINRSG-VEVIGVTPEPLPHLIEALVNRVKFFYQ............................................................................................................................... 169
2 -3.770PB001572 gi|163816107|ref|ZP_02207475.1| hypothetical protein COPEUT_02291 [Coprococcus eutactus ATCC 27759]gi|158448527|gb|EDP25522.1| hypothetical protein COPEUT_02291 [Coprococcus eutactus ATCC 27759]  ali follow..  14  114.....................................IKLAPVNAPYFDGAKLLIAADCTAYAYASFHEKFIKG---------------HVTLIGCKLTEIIRRNDIQSRMEVPCCGLEMAAKKALQDSGKFQVATISIDGRI................................................................................................................................................ 222
3 -2.730PB031792 gi|154174791|ref|YP_001409041.1| flavodoxin family protein [Campylobacter curvus 525.92]gi|112804021|gb|EAU01365.1| flavodoxin family protein [Campylobacter curvus 525.92]  ali follow..  11  3..............................IDKGGPEAHFKRYIKEHVKGKKTGLFI-----TLGADPAGEHGESMLKVGRELLNEGGNEILEFICQGAIDPKVIEEMKEM................................................................................................................................................................................ 79
4 -2.670PB000119 Q6KIT1_MYCMO/1-381 PB000119; Pfam-B_119;  ali follow..  11  160.....................................IVVAPNLVKILNKNLPNLWGEKFTFTFKEIKFKKINFFSSIFLSFI------SIFALTITFAYNSTFLNLAQIVRINTIRPNPNPNPEIFNFDLNNLPIENGLLTVEAIWFLQSKMELTDTATVIIINNTAYVNINKNSVKHNNFAVNYLK----------SEENNWYLTGRDFPLLGLFVEKFFKDDVEVFSPK-VVNNSTKNIFSSVGISSLSTNNPKLIFTFTFDN..................... 378
5 -2.430HGC00044 gi|162658718|dbj|BAAX01000887.1|1.0 TMP00920;  ali follow..  11  8..............................YADCVNGVGNAASPVGAYASSTEWNYDNEVAYGFGTQEIQGQPEISVNISETGAPQAYATFNVKVTNTGKVPGKTSVQIYGQAPYTGLEKVAIQLLNFEKSSELA--GASEIVSVKVDLQYIASYDMEHDNGDGTTGTYV--LDPG............................................................................................................... 161
6 -2.250PB155142 _HOMD.0127537_ bfor_c_1_1790 Tannerella forsythia ATCC 43037 [677748 - 680894] ORF  ali follow..  13  1...................................STQTSASVLNLINPEESQTILKDAAATAYGSRGANGVVLITTK-------SGRRGKTHIAFTAEYGTSDFATPHALDY.............................................................................................................................................................................. 74
7 -2.240PB009510 _JGI.0345302_ 2004041369 [Human Gut Community Subject 8]  ali follow..  7  1.........................................KMLSYVTPG----FYDKSYVGKWMFQVMGLEYDKALKLAEELPEQFFPE-------TAT--GLCWHEI-----KWGLPVQENLSYQERRQAIYEKRDYHSPMTPYIMERYLENATG------------VHIADCHDAGPLKYKPPHPNVFKAFFNGDGTLD--------SKKVRKLIDKLKESHTTYF.......................................................... 153
8 -2.170HGC00803 gi|163280588|dbj|BABD01030100.1|2.0 TMP01051;  ali follow..  6  2....................................NEKGAIPMKAFDPNYKLL-MYQDDYYP--AFLVDKVKDELQKVIDLLESGETDTEVIQETLDEAVCGINDLQEEFDENDSEIETVARDCIGVTVAYILEWFGIPIDIEEAIRER......................................................................................................................................... 114
9 -2.140PB012771 _Gut.Meta.Jp.0094636_ gi|162817068|dbj|BABA01027641.1||1 (+ 249:636~0 complete)  ali follow..  8  17....................................GIHYTLVGDYYFPT---CMLGDKSPN-WASLYERYLQEKHPHEYVRLIWADELAALLESVQRECEEREAVLVRE-------MAEAEGVNEEMKGNEQMAWVQRMEMICGRVEEVVCEEI.................................................................................................................................... 126
10 -2.020PB023890 Q7MUU3_PORGI/1-263 PB023890; Pfam-B_23890;  ali follow..  14  8..............................................................PWG--------------------RFGCYLLLFAC-----------------PII---------ASIMKKEFIGRTAKSLSLALAIFSGCIFGSVLPAWSQEIVAGELERCFLA-----------MPESVLPIVTMEERNDLCRRAGHLSG-HTASLESSLGGTVTFLLNRNFIRIQTSTVGEVFMRILPFSDSSSVICVVTTVLHPVADSRIDFY.......... 167
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;