Scheduled maintenance will begin on May 30th, 2025. Server will be temporarily unavailable — learn more.
current user: public
If you have questions about the server, please let us know.

Query: IDP02135 putative aspartate racemase [Salmonella typhimurium LT2] STM4510 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2], from CSGID

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240
# Score Template Links and tools%idFirst MKHTIGILGGMGPAATADMLEKFVELRHASCDQQHIPLIVSSIPDIPDRTACLLSGGPSPYRYLERYLHMLEDAGAECIVIPCNTAHYWFDDLQNVAKARMISILDATLGDIPPSARHVGLLATNATLATGLYQKKALARGLTLIQPEDAGQALVMQAIYTLKRGDKTAAQALLLPQIDSLIARGAQAIIMGCTEIPLIVAGHERAIACPMIDSTASLVRAAIRWYESWPDTRASLTGEQRLTALast
1 -4.100HGC00522 gi|163636101|dbj|BABG01000172.1|3.0 TMP00580;  ali follow..  12  1....................................................................................................................................LQTNYKRQRMNIFDIAKQNQEKAWQVIKN-------------TNIIQIWEDAGAKINLVGSLRTGLLMKHRDIDFHIYSSPLNLTDSFQAMARLAENPSIKR.......... 89
2 -3.780PB007011 gi|160888195|ref|ZP_02069198.1| hypothetical protein BACUNI_00603 [Bacteroides uniformis ATCC 8492]gi|156862330|gb|EDO55761.1| hypothetical protein BACUNI_00603 [Bacteroides uniformis ATCC 8492]  ali follow..  10  11............................................................................YVIRIICETEPLFFTSLCDKLLDENGGEEQPDIPEEKPSMADRGLYKNKKKRVKGKKDKLQPEVQGQPPLSWIRLSRKKLNAVFD--KDEHPARKDAFEEAEKLIDDKKVNIAFSSSFEYYLLLHFEYLYHPFHATECGERIDGKKVNYNCMTEKSKE.......... 185
3 -3.660PB002104 Q72PH8_LEPIC/1-220 PB002104; Pfam-B_2104;  ali follow..  9  1.....................................................................................MHNFKEKIQ--SKIRSRSCPFMQQNKFRKAIVAILMPMILVVSFGNCFVKKVYEVNDGFNIGSGLLAKFIKTLVM------------YFPFSILYFVGFFFDLILFNLIEF................................................ 103
4 -3.210PB031792 gi|154174791|ref|YP_001409041.1| flavodoxin family protein [Campylobacter curvus 525.92]gi|112804021|gb|EAU01365.1| flavodoxin family protein [Campylobacter curvus 525.92]  ali follow..  15  5.............................................................................................KGGPEAHFKRYIKEHVK-----GKKTGLFITLGADPAGEHGESMLKVGRELLNEGGNE............................................................................................. 57
5 -2.840PB046158 _JGI.0336690_ 2004028347 [Human Gut Community Subject 8]  ali follow..  12  81............................................................................................NAQGVQLSNIKITDENIKSFDRVARKYGI---------SLKKEVGADPPKYLVFFKAKDVDVMTAAFREYAGVELKKKQVKKPSVRKKLQKS............................................................ 165
6 -2.740PB009661 _Gut.Meta.Jp.0000785_ gi|162567239|dbj|BAAU01000237.1||2 (- 3549:4008~0 complete)  ali follow..  10  7.............................................................ELLDEAVDFCRKRGLEFYAVNSNMADMYIDDRNLGGLPDWGVIYEMVHNRWSYNRYLNEIHDFERSQKVSWWKRLINKK........................................................................................................ 101
7 -2.350PB017124 _Gut.Meta.Jp.0039711_ gi|162659581|dbj|BAAX01000024.1||2 (+ 385:1498~0 complete)  ali follow..  6  52...CLGAAGG---YITVALDQPIK-------NGKGSDIRILGNAFYSANDPKYGDATIGGSVEPGIVYVGVGSSPETAEWYELAGSEYYTTEMHRITIDNYIRWTASWTNPDGSKQTAEGWQPKNVYHKQSYWPAWEENDQITFLPDNAVNYGGDGSDPDNPQYWVSYRYAADSYGYADAAPNSDNVYTTF---DLDWAVDSDGNPKHLDHADFIRIQS......................... 277
8 -2.310PB000119 Q6KIT1_MYCMO/1-381 PB000119; Pfam-B_119;  ali follow..  10  249..NNLPIENGLLTVEAIWFLQSKMELT------DTATVIIINNTAYVNINKNSVKHNNFAVNYLKSEENNWYLTGRDFPLLGLFVEKFFKDDVE-SPKIPALYFV--VNNSTKNIFSSVGISSLSTNNPKLIFTFTFDN......................................................................................................... 378
9 -2.280PB044822 Q89ZL7_BACTN/1-147 PB044822; Pfam-B_44822;  ali follow..  8  2...........................................................................................KLSQQSLSTIESAIQKAAGKYVCGCDQTAV--------TDIHLQPDQTSGQLTIYNDDDENVMIEEWATYDGDDFMENVKPNLKSTLCRMKDAGDFDKVTILKPYSFVLVDEDKETVAELLDDTLLVDDELLK.................... 132
10 -2.260HGC00947 gi|162844524|dbj|BABA01000185.1|4.0 TMP01280;  ali follow..  11  19.............................................................................SIVSSCSEEEDCSMNARPMMQCYLYKIDGETERVVNDTLDSLTITAFG--TDSIILNNQKRVHGLSLPLRYTADSTVLV---------HYSKDVKIKKDTIVIRQKNTPYFLSMDC--YQMKQSITGRSYSRHLLDSIYIQTAEV...................... 152
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 6 0   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Schwarzenbacher R, Godzik A, Jaroszewski L. The JCSG MR pipeline: optimized alignments, multiple models and parallel searches. Acta Crystallogr D Biol Crystallogr. 2008 Jan;64(Pt 1):133-40. Epub 2007 Dec 5.