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Query: IDP04225 gene: ipaB; IpaB, secreted by the Mxi-Spa secretion machinery, required for entry into epithelial cells [Shigella flexneri] CAC05803 [Shigella flexneri], from CSGID

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MHNVSTTTTGFPLAKILTSTELGDNTIQAANDAANKLFSLTIADLTANQNINTTNAHSTSNILIPELKAPKSLNASSQLTLLIGNLIQILGEKSLTALTNKITAWKSQQQARQQKNLEFSDKINTLLSETEGLTRDYEKQINKLKNADSKIKDLENKINQIQTRLSELDPESPEKKKLSREEIQLTIKKDAAVKDRTLIEQKTLSIHSKLTDKSMQLEKEIDSFSAFSNTASAEQLSTQQKSLTGLASVTQLMATFIQLVGKNNEESLKNDLALFQSLQESRKTEMERKSDEYAAEVRKAEELNRVMGCVGKILGALLTIVSVVAAAFSGGASLALAAVGLALMVTDAIVQAATGNSFMEQALNPIMKAVIEPLIKLLSDAFTKMLEGLGVDSKKAKMIGSILGAIAGALVLVAAVVLVATVGKQAAAKLAENIGKIIGKTLTDLIPKFLKNFSSQLDDLITNAVARLNKFLGAAGDEVISKQIISTHLNQAVLLGESVNSATQAGGSVASAVFQNSASTNLADLTLSKYQVEQLSKYISEAIEKFGQLQEVIADLLASMSNSQANRTDVAKAILQQTTALast
1 -5.380HGC00928 gi|162868028|dbj|BABB01001979.1|3.0 TMP01255;  ali follow..  6  1.........................................................................................................................................................................................................................................................TFVWIIVPMARTATEKLEMRGQSVTVENIGKTVTDGFENNVNDFISSDKPRNFFQKLADVFVLVIGFILKFFIILAGIFLLPPLVLVVFILVVVTFA-----LMGGAGFIYNLSPFGADLINGAPLSMAIMGCIGTILFIGIP............................................................................................................................................................................................ 142
2 -4.270PB032242 Q8FLW6_COREF/1-257 PB032242; Pfam-B_32242;  ali follow..  11  2..........................................................................................................................................................................................................................................................................AITSAPPVTTPAPTAQSVAADAAMSRFETQTSR-------YGSLTMTAGLILSLLGPAYLVFFADLQLAVAAIFGVLWFVEPLT--ILGSAAM------YQAFMIGNISNKLVPAAIVAQSSIGAKAGSKR--GDLAAVMAIGGAATMHLLSLLIFVGFLGTWLVSLVPVEVIEVARLYIMPSL.................................................................................................................................. 181
3 -4.100PB053244 _HOMD.0087087_ pint_c_2_2642 Prevotella intermedia 17 [158005 - 157583] (REVERSE SENSE) ORF  ali follow..  22  5........................................................................................................................................................................................................................................................................................................................AIGGLLMAVGTGLYAFFIIQDVAVMLIGAICFATMQMRQQYLGTNLTIRRLRKI--MVLADIGFILAGLF...................................................................................................................................................................................................... 74
4 -3.950PB003142 Q8DVS6_STRMU/1-162 PB003142; Pfam-B_3142;  ali follow..  10  114...................................................................................................................................................................................................................................................................VSTKAQAEMQKLHEALKKEKKSQSKEKRQALKQYKYQLKQEKRHQKRQG................................................................................................................................................................................................................................................................................ 162
5 -3.470PB038151 Q8A4A5_BACTN/1-178 PB038151; Pfam-B_38151;  ali follow..  13  1.............................................................................................................................................................................................................................................................................................MATQAIDATIFASSHPDIAKRTSISGLLISCVMLLIGILSFASTSTVSMALMVFGTGLFL........................................................................................................................................................................................................................................... 67
6 -3.430PB005684 gi|160884252|ref|ZP_02065255.1| hypothetical protein BACOVA_02230 [Bacteroides ovatus ATCC 8483]gi|156109991|gb|EDO11736.1| hypothetical protein BACOVA_02230 [Bacteroides ovatus ATCC 8483]  ali follow..  8  1....................................................................................................................................................................MPKHPTGTKGTAGTARKFPTHTGACNKVGNDNISDDKEGEEELLPGSEPQHQLPTFENDWPEFLQRIIKAGSSPIQHDIMLLGALTALGACMSRVVAPSASGKLSYIRLLVEPIHDEIRKEVTIQMKAYKKEKAEYDAMGKERT---FLISGNNTGTGILQNIMDSDGTGLICEAEADTLSSDTLRKAFDHDRLYNRRTDQEYREVKKSYLSVLISGTPSQVQTFGSEIDWEEIFTAMGLEWKEKLSVIKTHGIHTLQLTDEQKEEIDTVFSDLFERSSVANGREMYSFVARLAVNLCRIM-AVLRALESPQPYDFKTSPTSPFTPDKEIPTDNRKDDIITRWDVSISQEDFHAVLSLAEPLYCHATNADRDYLFQKLGDEFTR-----TQLLEEAVAMGIKENTALTWLKR.... 493
7 -3.330PB019278 gi|154508461|ref|ZP_02044103.1| hypothetical protein ACTODO_00960 [Actinomyces odontolyticus ATCC 17982]gi|153798095|gb|EDN80515.1| hypothetical protein ACTODO_00960 [Actinomyces odontolyticus ATCC 17982]  ali follow..  11  5...........................................................................................DNFLDAMFAPYPASTRLTDAKVELRAMMEDAYADAIASGMTHNEAVGRVITDFGNLQEIAPVLGIADDLTAAEKAPQPEAAPAPAGTEGVGAPSRPRVTLPEAQELAEARRRGAASLGLSVAILVSTGIPLFAFRGLSETGLVPFNEDTATFLALAVDLPLVALGVIMLLTRSRL--FTNVKHLVDLEFTPDPIVTAWAARLRLEHEDRRMRRLAIAVGLWICAALPLAVVVPAGADNGTLSVVLVALGLWIFLPANWAVQTDGRQEYDYNEENYRDPVIGIVASVYWPCVIVAYFVWGA............................................................................................................................................................................................. 331
8 -2.950HGC00690 gi|162868815|dbj|BABB01001192.1|3.0 TMP00870;  ali follow..  14  1........................................................................................................................................................................................................................................................................................................................MFEYILREIFLSVIAFLAGAGVSAGVFAFVIGVVPRILRCSRIENIILIENVMICGVVAGNISSVLDTAYN-----LGFANMPKVPVSNICGNIIIAIYGLCVGIFVGCIAVALAEHTFPIIYKRMK--LRAGLGIIVISMA--IGKALGALY................................................................................................................... 148
9 -2.510HGC00311 gi|163635536|dbj|BABG01000737.1|2.0 TMP00178;  ali follow..  13  4................................................................................................................................................................................................................................................................PKNLEQLRAEKEQVETQLAQEQHKLKRLENRKKYLEKGERQKRTHRLCNLGGTIESLA.......................................................................................................................................................................................................................................................................... 61
10 -2.500PB022815 A4DEQ0_LISMO/1-452 PB022815; Pfam-B_22815;  ali follow..  10  282...............................................................................................................................................................................................................................................IKNKVDFSYYLDYLNLMRDLNIAIDSENIIMPKNLVIAHDNAVKLLYQMKHEVEEQQYKVRTEGKALSHCVGG---------NYIKQHIEGKTTI------IFVRDKQDLEKSLYTLEYKNGQIYQLRGKHNCDPTKDVQMAANKWAKLLKSKTKVLQN...................................................................................................................................................................................... 452
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 1 6   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Dunbrack RL Jr, Dunker K, Godzik A. Protein structure prediction in biology and medicine. Pac Symp Biocomput. 2000;(12):93-4.