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Query: IDP04391 gene: cotJB; spore coat protein CotJB [Clostridium perfringens ATCC 13124] CPF_1067 [Clostridium perfringens ATCC 13124], from CSGID

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80
# Score Template Links and tools%idFirst MKALELLDDIQKLQFYAVELNLYLDNFPENRKATEDYKEISSKLSELIERFECEYGPIRNFGQAYVENPVAWIEQPWPWEIRYLast
1 -4.000HGC00803 gi|163280588|dbj|BABD01030100.1|2.0 TMP01051;  ali follow..  16  33.........VDKVKDELQKVIDLLESGETDTEVIETLDEAVCGINDLQEEFDENDSEIETVARDCIGVTVAYILEWFGIPID. 106
2 -3.820HGC00024 gi|162813637|dbj|BABA01031072.1|2.0 TMP01508;  ali follow..  8LGMTKACLCALAVSLVTTGCSDLLDKEPPSAIS-SFWTGEGDAMLALTGCYR............................... 60
3 -3.480PB040621 Q8A865_BACTN/1-132 PB040621; Pfam-B_40621;  ali follow..  15  41.DTVVYFTDIQILDSAKVSKEGFLTHRDLYSYQLKNYKKLEKEATKILSKYKRN............................. 113
4 -3.270PB053359 gi|153891307|ref|ZP_02012332.1| conserved hypothetical protein [Opitutaceae bacterium TAV2]gi|151582630|gb|EDN46158.1| conserved hypothetical protein [Opitutaceae bacterium TAV2]  ali follow..  49..........AVIRRTLGAPGTFDNDTGNDGAGWLRIG-LAGHQPGLGEVYISTGSLFLPLGLPASDDFWSQPDAPWTSARVW 126
5 -3.150HGC01024 gi|162869036|dbj|BABB01000971.1|4.0 TMP01399;  ali follow..  30IQPDRMENIL--YDYHLSISMGNNLSYSDNYQKEAYKNYVFEKHHITEAEFDSSM............................ 82
6 -2.620HGC00991 gi|163600283|dbj|BABF01000984.1|3.0 TMP01348;  ali follow..  13WGYITMKKMIAYCGLDCEKCDAYIATINDNQELRKKTAKLWAELNNAPILPEH.............................. 65
7 -2.600PB001404 Q2S5L8_SALRD/1-256 PB001404; Pfam-B_1404;  ali follow..  13  166.NRLAATRIMRVLTFQRL-TDVYGDVTPHYTRQDSIYMDLHDELRAAVDQFDASQPTFGGADLFFNGSIEQWKR......... 251
8 -2.570PB019278 gi|154508461|ref|ZP_02044103.1| hypothetical protein ACTODO_00960 [Actinomyces odontolyticus ATCC 17982]gi|153798095|gb|EDN80515.1| hypothetical protein ACTODO_00960 [Actinomyces odontolyticus ATCC 17982]  ali follow..  16  1................MDTIDNFLDA-----APYPASTRLTDAKVELRAMMEDAYADAIASGMTHNE................ 48
9 -2.530PB021133 Q64YN4_BACFR/1-310 PB021133; Pfam-B_21133;  ali follow..  51IYKSKVIKDINIGQLLKTDAKFYIHVSPSEKELQAMGNTEHEQAESMKRYIREV............................. 107
10 -2.490PB076697 gi|160881556|ref|YP_001560524.1| hypothetical protein Cphy_3432 [Clostridium phytofermentans ISDg]gi|160430222|gb|ABX43785.1| conserved hypothetical protein [Clostridium phytofermentans ISDg]  ali follow..  20  182.NADKLLEGLNKLKIDYIDFSLFFDHHWTTEAAFFAYQYMLDYMEK..................................... 240

FFAS is supported by the NIH grant R01-GM087218-01
1 3 7 7 9 2   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Sikora S, Godzik A. Combination of multiple alignment analysis and surface mapping paves a way for a detailed pathway reconstruction--the case of VHL (von Hippel-Lindau) protein and angiogenesis regulatory pathway. Protein Sci. 2004 Mar;13(3):786-96. Epub 2004 Feb 06.