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Query: IDP04465 hypothetical protein [Yersinia pestis CO92] YPO1994 [Yersinia pestis CO92], from CSGID

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MLLNNITPVNKSLTLQDLLGILSHSSAISNVANGIYVESEILEVGSWLSAYAANKDEIFSQIITELENPYQFQLENDIQAPSFILYSNERITIRLVMWLPLQGKLDRTPYSYEEAHDHNFDFWTVNFFGGGYRTRLYDYDYDKVSGVNNEVVELNCYGDKILSPNTVMFYFRSKDVHTQYPPDELSVSLNLIVRPIKSKHQYEFQIDSDALEGKIEARIKKGRYERYAFQNVLYNGLLSLENEKSRQLVHKVSLCNHREEIRLIAYEALLKHAQKKGNVSDIKSISEQAFKDQSLYIKNKISHSIGSMPCMSPKPRLast
1 -9.690PB014998 gi|86133284|ref|ZP_01051866.1| hypothetical protein MED152_01230 [Tenacibaculum sp. MED152]gi|85820147|gb|EAQ41294.1| hypothetical protein MED152_01230 [Polaribacter dokdonensis MED152]  ali follow..  8  82..............................................................................................................................................................................................................................NLTFDSAIRPCAKICEHL-IQEIIETGFDWLITPQKIAVRAYTMNTLYLFGLENDWHPELKHLIETKIIHESKGTKARGKHILNLIEKHQ.... 191
2 -3.400PB044380 A7LRP7_BACOV/1-223 PB044380; Pfam-B_44380;  ali follow..  11  129.....VDAVSRVVTPDDLDNAGNVL---FKLNDADKDEEKSLRAALTLHTIRETDLFIDSLMGKYLDGNGNPLSVRKTKSVVP-----VSDGWK.............................................................................................................................................................................................................................. 221
3 -3.390PB000795 Q74Z21_ASHGO/1-280 PB000795; Pfam-B_795;  ali follow..  6  11.................................................QFKPVKGIYEDRLRQFIDNGGDYRDLNLPKFYDRQRKRIDSTRVKVQYYQPEKRPPWEEVVRRDRAGEIEWKDVYLGPFGPSWSTTWFKVELDIPESWSSSGEQLVF-------DCENEGIVIDGDTLLPKTAFSGNGERTEYLLPLGRSSVSFYIECGNNGMFGVGRNNNSINPPDDDRYFHLQKADLVWPNWQARALYIDFWM----------LGDAARELPDNSWQKHRARELGNLVMNMFDPEDVSTVDKCRKFLQK...... 268
4 -2.930PB034883 _HOMD.0130261_ bfor_c_1_4664 Tannerella forsythia ATCC 43037 [1809083 - 1810348] ORF  ali follow..  11  129................NFIGYFREAMYKRHKNSSTSILVNWKRAMDFLKMYAGENLPFFKIDNAFAEE........................................................................................................................................................................................................................................................ 180
5 -2.890PB015954 Q6WBB3_BIFBR/1-225 PB015954; Pfam-B_15954;  ali follow..  4  158....IVLISSRAFAALQFQDCEIARASTYHVLRNERDVTAREAYRRKSAEADIDGLFMRDIIREKVTN........................................................................................................................................................................................................................................................ 221
6 -2.570HGC00248 gi|162576253|dbj|BAAV01029229.1|2.0 TMP00024;  ali follow..  13  76..............................................................................................................................................................................................................................NDTDMKYILRRMEKYGISSEKKIESAIRIVGNENPYHPIR-DYLNGL............................................... 121
7 -2.360PB003564 gi|46242789|gb|AAS83494.1| TraD [Bacteroides fragilis]  ali follow..  5  147.....DKKQASGSSFEDIDMAVHTI------WKESPSDEEMRHAGKVMTELDGTELFLAKAMAVFVDTVNMTVTQQKEKVFV---DNIEEFDFR.............................................................................................................................................................................................................................. 243
8 -2.250HGC00878 gi|162869432|dbj|BABB01000575.1|7.0 TMP01167;  ali follow..  14  9....FHARTENKTDLDKIEDFLDDTFSEFTNRYGDSVDAEFEEIKKLVESLEDKDKVYIKILTYEFEDE------------SFRIFSQGEWKVKLV............................................................................................................................................................................................................................ 98
9 -2.130PB062763 Q9F6U5_BACTN/1-245 PB062763; Pfam-B_62763;  ali follow..  11  147.....GKGQASGSAFEDIDMAVRTI------KKDSPSEAEMRHAGKVMTELDGTE--LYSRITERLTDEPMSER.................................................................................................................................................................................................................................................. 207
10 -2.120PB002770 Q744K2_MYCPA/1-559 PB002770; Pfam-B_2770;  ali follow..  5  1MTMQGDAQCVRPLAARLFPAMFALLMLVIAGTGSAAAQPSPWTARPFGDRLVGWDTYRRLDLLPYLSADTQSLQLSSFDRSG----------------GDFDISTGNKNGTGGCLAPGGAGCVIAEDHGAGEVDSIW-LTRDGGNLRAIGNIRVELDGQTVLDPLVANAGESPGGDYIKVPPYRRSMRISV----ESHLEYYHVDYRQFPTAEGVSTFSPADPAVDVLDRFRAAGTVDPKPAAPGEVHSNRVIELPGGAEQTIAESTGPASISAPAPADQSLTGLRLRIEFDGRTTVDSPLGEFFGA......... 316
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 6 6   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Pio F, Chu Z, Reed JC, Godzik A. PAAD - a new protein domain associated with apoptosis, cancer and autoimmune diseases. Trends Biochem Sci. 2001 Feb;26(2):85-7.