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Query: IDP06256 gene: glyQ; glycyl-tRNA synthetase subunit alpha [Streptococcus pneumoniae TIGR4] NP_345929 [Streptococcus pneumoniae TIGR4], from CSGID

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSKKLTFQEIILTLQQFWNDQDCMLMQAYDNEKGAGTMSPYTFLRAIGPEPWNAAYVEPSRRPADGRYGENPNRLYQHHQFQVVMKPSPSNIQELYLESLEKLGINPLEHDIRFVEDNWENPSTGSAGLGWEVWLDGMEITQFTYFQQVGGLATGPVTAEVTYGLERLASYIQEVDSVYDIEWADGVKYGEIFIQPEYEHSKYSFEISDQEMLLENFDKFEKEAGRALEEGLVHPAYDYVLKCSHTFNLLDARGAVSVTERAGYIARIRNLARVVAKTFVAERKRLGYPLLDEETRAKLLAEDAELast
1 -3.820PB005346 A0R807_PELPD/1-258 PB005346; Pfam-B_5346;  ali follow..  10  2..................................................................................................................................TDSLFWAIDIKNQFHHNWMGMSQINQTTSGNFYSHRNIT-VLENFTDALDCLTAHLMLECSEVLAGVKPANLISIVNRTRPCGRNLYLLWQQHHTDLAQRLNNLNFMVLHLSHPGIRTLLHKAGYKDDADCEGMLLELRSRIGGNNSFPHEIGLFIGYPA............... 181
2 -3.720HGC01215 gi|162843249|dbj|BABA01001460.1|3.0 TMP01713;  ali follow..  9  9...............................................................................................................................GFSVDVFIVHIRE--LFFCHFSVSDTFANKAASGGNVVSENTIAVHEQTDAYIAMPQLPYLPDAELAGMGGQLHSLTYSRIQRISTTEYIFSLKDWIDKLAQRAAV-----LSLHREKLYDATAYYRCQPVCE---YIFTLRRIL................................. 149
3 -2.590PB044863 Q5LB69_BACFN/1-105 PB044863; Pfam-B_44863;  ali follow..  19  35............................................................................................................................DSNGIVDEAVLEKLKIRSLIASQEEDSKDLLDLCIDVAFGLQQLIKLYLTWLSKQE............................................................................................................................. 99
4 -2.540PB001232 gi|126647001|ref|ZP_01719511.1| hypothetical protein ALPR1_19713 [Algoriphagus sp. PR1]gi|126577049|gb|EAZ81297.1| hypothetical protein ALPR1_19713 [Algoriphagus sp. PR1]  ali follow..  7  503.............................GISNSESSADFDQIEVGIEHYFEFGVSGKFDFNVSAGTFSNKNVYFQDYQHFGGNRTIFSNFGPASNYRFMDYYKYSTNTSYVSGI---------------FHYQFRKFLLTQLPMLRFSGKTENSKNYWEVGYSLDNLFRIFR.................................................................................................................................... 642
5 -1.950PB002104 Q72PH8_LEPIC/1-220 PB002104; Pfam-B_2104;  ali follow..  9  4FKEKIQFSKIRSRSCPFMQQN---KFRKAIVAILMPMILVVSFGN--------------CF---------KFAIVKKVYEVNDGFNIGSGLLAKFIKTLVMYFPF-SILYFVGFFFDL--------------ILFNLIEFWS---------------------GNNPVGYNEYDENGKYVKAYEENGEKLLLSYSDFGKRLDIQFAKEGNSQNLIVFRAEPGKFFVEKDGKLEEIVVSSETVGSKTILKMAEQGKLKSTKVVDTKTLNDLEAKLVSE............................ 219
6 -1.940PB064361 Q64PJ4_BACFR/1-580 PB064361; Pfam-B_64361;  ali follow..  10  1MKIERLFIYCLLAGTSLLASCNSEDMTDNPVETLSEGMYPLTFTAMQGE-----VVATPQTRVSDYDDTDGKHK----SKWDGGE----------------VIGVKIGTDGAVGSYTLDSDGKPTTSTSNIPAYWQSTASQTVGWYPNTADISLTGQDNTGNKFPYVLKGVSSKQKENVQLNLEHQLVKFRVKLN------------GDVPNLSDAKVFFYGYPTCKNEYGTVIPQGDKTYLATRKVGDYYTAMLAPDTKTSNNFVKIE.................................... 236
7 -1.910PB053359 gi|153891307|ref|ZP_02012332.1| conserved hypothetical protein [Opitutaceae bacterium TAV2]gi|151582630|gb|EDN46158.1| conserved hypothetical protein [Opitutaceae bacterium TAV2]  ali follow..  12  1................LIAPDGSFPPVGRSIAYRCGAFQLLAQMALRRPEGVAPAQVRGALTAVIRRTLGAPGTFDNDTGNDLGEVYISTGSLYLCTTAFLPLGLPAS-------DDFWSQPD...................................................................................................................................................................................... 117
8 -1.810PB000119 Q6KIT1_MYCMO/1-381 PB000119; Pfam-B_119;  ali follow..  13  181.KFTFTFKEIKFKKINFFSSIFLSFISIFALTITFAYNS--TFLNLAQ------IVRINTIRPNPNPNPNEIFNFDLNGLLTVEAIWFLQSKMELAYVNINKNSVKHNNFAVNYEENNWTGRDFPLLGLFVEKFFDDVEVFSPKIPALYFVVNNSTKNIFSSVGISSLS--TNNPKLIFTFTFDNGFS..................................................................................................................... 381
9 -1.750PB002534 Q8H9W1_9CAUD/1-397 PB002534; Pfam-B_2534;  ali follow..  10  8................................................................................IGHRKRDLPELQAHEELPAIASFGFEVELEGSDEWPDGWNRKEDGSLRSGMEYVFDG-RVDRFAATMEAVKPAPTFRCLHMDMRLIKTVLTY----MVFEDVFFDHCEPYRRDSNFCIPFFSNDWLAQAFGRRLLAVNEDGLRVRGLMNWPKYSALNLQTVTTFGSIEFRGSHAMTSRDEMVGLMQRMLCLKAFAKGHEGVDTSEF................... 228
10 -1.710PB004996 Q5NNS6_ZYMMO/1-150 PB004996; Pfam-B_4996;  ali follow..  6  7LFERLSRSSFRRRFQQYLANKGMETILEHGIAQRLAPAEIPNDGKQTPCKGHPVFLAQTCCR................................................................................................................................................................................................................................................... 81
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 1 0 5   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;