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Query: IDP06445 gene: H3L; H3L [Monkeypox virus Zaire-96-I-16] NP_536520 [Monkeypox virus Zaire-96-I-16], from CSGID

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MAAAKTPVIVVPVIDRPPSETFPNVHEHINDQKFDDVKDNEVMQEKRDVVIVNDDPDHYKDYVFIQWTGGNIRDDDKYTHFFSGFCNTMCTEETKRNIARHLALWDSKFFIELENKNVEYVVIIENDNVIEDITFLRPVLKAIHDKKIDILQMREIITGNKVKTELVIDKDHAIFTYTGGYDVSLSAYIIRVTTALNIVDEIIKSGGLSSGFYFEIARIENEMKINRQIMDNSAKYVEHDPRLVAEHRFETMKPNFWSRIGTVAAKRYPGVMYTFTTPLISFFGLFDINVIGLIVILFIMFMLIFNVKSKLLWFLTGTFVTAFILast
1 -7.370HGC01215 gi|162843249|dbj|BABA01001460.1|3.0 TMP01713;  ali follow..  19  4......................................................................................................................................................................................................................................................................................VFCVEG-FSVDVFIVHIREICFPVLFFCHFSV.............. 34
2 -5.190HGC00928 gi|162868028|dbj|BABB01001979.1|3.0 TMP01255;  ali follow..  15  129......................................................................................................................................................................................................................................................................................IMGCIGTILFIGIPIFSLIYAICSQLFKIRTQARWILLALWLISFI 177
3 -5.150PB069407 _HOMD.0084606_ pint_c_2_12 Prevotella intermedia 17 [3585 - 4295] ORF  ali follow..  10  5...............................................................................................................................................................................................................................................................................................LNLYCTILLCIMSAVILYSFYAVSKDMVSG....... 34
4 -4.480PB001708 Q3IRP6_NATPD/1-505 PB001708; Pfam-B_1708;  ali follow..  17  3.................................................................................................................................................................................................................................................................EGIPEQLIRRLSDASRLVPLALLAVV----AAVIYVWRPLFHGLIYRVAYSPSLLILVGTTVVAGIA 65
5 -4.070PB023890 Q7MUU3_PORGI/1-263 PB023890; Pfam-B_23890;  ali follow..  23  1..................................................................................................................................................................................................................................................................................MDPPVCSPWGRF-----GCYLLLFACPIIFASIMKK---FIGRTAKSLSL 43
6 -3.700HGC00690 gi|162868815|dbj|BABB01001192.1|3.0 TMP00870;  ali follow..  19  92......................................................................................................................................................................................................................................................................................IIAIYGLCVGIFVGCIAVALAEILHTFPIIYKVISMAIGKALGALY 148
7 -3.630PB038151 Q8A4A5_BACTN/1-178 PB038151; Pfam-B_38151;  ali follow..  14  2.......................................................................................................................................................................................................................................................ATQAIDATIFASSHPDIAKRTS-----ISGLLISCV----MLLIGILSFASTFELEDKSSTVSMALMVFGTGLFLL. 68
8 -3.510PB044572 Q8A533_BACTN/1-343 PB044572; Pfam-B_44572;  ali follow..  93.............................................................................................................DTYIALYKGDRVVVAEFAIHPADSVDSVWVKLAHTQEEQGWIRKESFVPTDSISQAIHFFSDTHASYFMIIFALFVGVYLFRAFRRKQL----------------QLVYFNDIDSVYPLFLC-----------------LMAFSATVYESMQVFVPDTWEHFYFNPTLSPFKVPFILSVFLLSIWLFLIVALAVLDDLFRQLVFYLLGLMSSCIF 284
9 -3.410HGC00552 gi|162599220|dbj|BAAV01006262.1|2.0 TMP00636;  ali follow..  16  35.......................................................................................................................................................................................................................................................................VAGAVESTWSTASTQIKSVVDNVVFPAIDLILAVFFFAKL-YRKSGQFEWAAPAILFACLV 100
10 -3.300PB019278 gi|154508461|ref|ZP_02044103.1| hypothetical protein ACTODO_00960 [Actinomyces odontolyticus ATCC 17982]gi|153798095|gb|EDN80515.1| hypothetical protein ACTODO_00960 [Actinomyces odontolyticus ATCC 17982]  ali follow..  2...DTIDNFLDAMFPYPASTRLTDAKVELRAMMEDAYADAIASGMTHNEAVGRVITDFGNLQEIAPVLGIADVTLPEAQELAEARRRGALGLSVAILVST-LFAFRGLSETGLVPFNEDTATFL---LPLVALGVIMLLTRSRLFTNVKHLVDLEFTPDPIVTAWAARLRLEHEDRRMRRLAIAVGLWICAALPLAVVQALPPIGVGMGVPAGADNGTLNGGDLSELALALSVVLVALGLWIFLPANWAVQTQQTLIRDGRQEYDYNEENYRDPVIGIVASVY---------CVIVAYFVWGAVFN-KSWVLFPISGLLFGVF. 353

FFAS is supported by the NIH grant R01-GM087218-01
1 3 5 7 5 4   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Jaroszewski L, Bierzynski A, Godzik A. Multiple model approach--dealing with alignment ambiguities in protein modeling. Pac Symp Biocomput. 1997;:328-39.