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Query: IDP90826 gene: alaS; alanyl-tRNA synthetase [Yersinia pestis CO92] YPO3305 [Yersinia pestis CO92], from CSGID

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSKSTAEIRQAFLDFFHSKGHQVVSSSTLVPNNDPTLLFTNAGMNQFKDVFLGLDKRAYSRATTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKHDAINFAWELLTSEQWFNLPKEKLWVTVYETDDEAYNIWANEVGVPHERIIRIGDNKGGAFASDNFWQMGDTGPCGPCSEIFFDHGDHIWGGPPGSAEEDGDRYIEIWNIVFMQFNRQSDGTMLPLPKPSVDTGMGLERIAAVLQHVNSNYEIDLFRDLIAAVADVTGATDLSSKSLRVIADHIRSCAFLISDGVIPSNENRGYVLRRIIRRAIRHGNMLGAKETFFYKLVAPLIAVMGPAAAELKQQQAMVEQVLKTEEEQFARTLERGLALLDDELSKLTGDTLDGETAFRLYDTYGFPVDLTADVCRERNLKVDEAGFEQAMEAQRRRARESSGFGADYNSLIRVDSASQFSGYDHVQQHATVTALFRNGEAVDEIHAGEEAVVVLNRTPFYGESGGQVGDKGELKNATATFSVTDTQKYGQAIGHVGILTTGTLRVNHSVEALVDVVRRNRIRLNHSATHLLHAALRNVLGEHVAQKGSLVNDKYLRFDFSHFEAMKPEQIRLVEDLVNEQIRRNMPVQTEVMELDAAKEKGAMALFGEKYDDQVRVLTMGDFSTELCGGTHASRTGDIGLFRILTESGTAAGIRRIEAVTGEGAIALLHQQSDLLQDVAHLVKGDIHNLADKVRAVLDRSKMLERELQQLKDQQAAQESASLSSSAKLINGVKLLVSQLDNVEPKMLRTMVDDLKNQLGSAIIVLATTADDKVSLIVGVTKDLTGKVKAGELIADIAQQVGGKGGGRPDMAQAGGTDVQALPAALASVEAWVASRMLast
1 -3.330PB011130 gi|88806557|ref|ZP_01122074.1| hypothetical protein RB2501_00756 [Robiginitalea biformata HTCC2501]gi|88783389|gb|EAR14561.1| hypothetical protein RB2501_00756 [Robiginitalea biformata HTCC2501]  ali follow..  12  1.....................................................................................................................................................................................................................................................................................................................................MNKTVNINLANMLFHIDENAYQKLLRYLEAVKRSFAGTADEIIADIEARIAELFYEKMENERQVITQKEVDAVIAIMGQPEDYQVDEDIFEDVPPGTGSAKSRTTRSAKK........................................................................................................................................................................................................................................................................................................................................................................................................................................................ 112
2 -3.140PB036876 Q56VH6_BACFR/1-141 PB036876; Pfam-B_36876;  ali follow..  7  2............................................................................................................................................................................................................................................................................................................................................KTTDHFKRTIQMYLEQRAAEDALFAKNYRNPA----KNIDDCVTYILNYVQKSGCNGFTDGEIYGQAVHYYDENEIEVGKPIQCQVAVNHVVELTAEEKAEARQNAIRQYQDEEVRRLQNRNKPRTATKATVQEVQQP..................................................................................................................................................................................................................................................................................................................................................................................................................... 135
3 -2.900HGC00803 gi|163280588|dbj|BABD01030100.1|2.0 TMP01051;  ali follow..  10  10.........................................................................................................................................................................................................................................................................................KAFDPNYKLLDEMYQDDYYPAF------VKDELQKVIDLLESGETDTEVIQETLDEAVCGINDLQEEFDENDSEIETVARDC----------------------------GVTVAYILEWFGIPIDIEEAIRERD........................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 115
4 -2.640HGC00164 gi|163636082|dbj|BABG01000191.1|4.0 TMP00833;  ali follow..  14  1.....................................................................................................................................................................................................................................MNDLIVDVKLWGESVGSLYWEKESNYERKFIRDISPIIMPISQYRNTPYRFLENRTDCFKGLPGLFAD-SLPDTFGNQIINEWFASKALEFEPSSPINGMNESSVLH--IEELTELAKSVFTDRMAFQVQLRQEGRNILDILKVG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 172
5 -2.270PB053359 gi|153891307|ref|ZP_02012332.1| conserved hypothetical protein [Opitutaceae bacterium TAV2]gi|151582630|gb|EDN46158.1| conserved hypothetical protein [Opitutaceae bacterium TAV2]  ali follow..  8  1..............LIAPDGSFPPVGRSIAYRCGAFQLLAQMALRRELPEGVAPAQVRGALTAVIRRTLGAPGTFDNDTRIGLAGHQPGLGE--------VYISTGSLYLCTTAFL---PLGLPASDDFWSQPDAPWTSARVW............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 126
6 -2.230HGC00106 gi|162841414|dbj|BABA01003295.1|1.0 TMP01000;  ali follow..  24  4...................................................................................................GDFVKLSNLTIGYTLMKSLRVYVSGNNLFCITGYSGDPELDISNVQAPGVPTTRSFTFGVN........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 78
7 -2.040PB001025 Q1QFV3_NITHX/1-288 PB001025; Pfam-B_1025;  ali follow..  9  10...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................LQFSDMKSDSPDLKTAMLGRIRADEPRKVWTPSDFVDL-RDAVDKTL-QRLTKAEALRRIDRGLYDQPGFNKLTQKPNPPDPRSVIDAVGRRDQTRMLVDGMTAANDLGLTDAVPAKIDARRRAIKLGNATITF--WAGRPAMRVVQALHWLRDLLVRDGESEQIQRKLAKLFEDPAVGPPLKADLAAGMTALPTWMLVFLKPLIETDPDDRGQHPDNVHAAAD........................................................................................................................ 244
8 -1.940HGC00509 gi|162658693|dbj|BAAX01000912.1|3.0 TMP00561;  ali follow..  20  3.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................YLHARGLFHVLLLICNRELLLIGKRKDEDDMAKSTKTYEERIRALEKKEQESIEATKKLIAQRKELEKRKKA------EESKKRTHRLCQIGGAVESVLG................................................................................................................................................................................................................ 96
9 -1.850PB000790 _Gut.Meta.Jp.0111831_ gi|163310496|dbj|BABD01000203.1||3 (- 2591:4589~0 complete)  ali follow..  10  216.........................LGSDYCSGKARIYFAPW-----ESYFL--------LAEAAEYGWISNITPKEAYELGIRSS----FEYFGQEVVYNYPTASKTLYG----MNDHLTKIITQK-YIAQM---YQVLEIWNDRLGLPFFEIPANESDLIGSDMVNVLKKDSWKNP--PTTL--DNADPENYQKAVELLGGSDVIITPLW....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 436
10 -1.820PB022697 Q5LAY4_BACFN/1-165 PB022697; Pfam-B_22697;  ali follow..  8  2.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................IEVTDASLQKAAGEGMDEFIQVFTDKYKEVIGGELTAETMPLLTGEQHSLLAYQIFRDEVM------------GGFC-NGYGGYIFDNPFAKVMRLWGAEDFSKLVYKAKKIYDAHRHDLEKERTEDEFMAMYEQYEAFDDLEEEYLDIEEEVTALVASYVDDHLELFAK................................................................................................................ 163
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 9 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Jaroszewski L, Li W, Godzik A. A segment alignment approach to protein comparison. Bioinformatics. 2003 Apr 12;19(6):742-9.