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Query: IDP90920 gene: glyQ; glycyl-tRNA synthetase subunit alpha [Vibrio cholerae O1 biovar eltor str. N16961] VC0021 [Vibrio cholerae O1 biovar El Tor str. N16961], from CSGID

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSGNIWVYFSVIFYQFRQKNRANLTMQKYDIKTFQGMILALQDYWAQQGCTIVQPLDMEVGAGTSHPMTCLRALGPEPIATAYVQPSRRPTDGRYGENPNRLQHYYQFQVIIKPSPDNIQELYLGSLRVLGVDPCVHDIRFVEDNWENPTLGAWGLGWEVWLNGMEVTQFTYFQQVGGLECKPVTGEITYGIERLAMYIQGVDSVYDLVWTDGPLGKVTYGDIFHQNEVEQSTYNFEHADVDFLFTYFDQCEKECKYLLELEKPLPLPAYERILKAAHAFNLLDARKAISVTERQRYILRIRNLTKSVAEAYYASREALGFPMCKKSEQKLast
1 -4.400HGC01215 gi|162843249|dbj|BABA01001460.1|3.0 TMP01713;  ali follow..  9..........................................................................................................................................................GFSVDVFIVHIREI-LFFCHFSVSDTFANKAASGGNVVSENTIAVHEQTDAY-----------IAMPQLPYLPDAELAGMGGQLHSLTYSRIQRISTTEYIFSLKDWIDKLAQRAAVLSLHREKLYDATAYYRCQPVCE---YIFTLRRIL......................... 149
2 -3.290PB044863 Q5LB69_BACFN/1-105 PB044863; Pfam-B_44863;  ali follow..  10  11................................................................................................................................TRSMEISEENLVTIEKY--QHLIDSNGIVDEAVLEKLKL-SLIASQEEDSKDLLDLCIDVAFGLQQLIKLYLTWLSKQE........................................................................................................................... 99
3 -3.000PB047496 gi|150008556|ref|YP_001303299.1| hypothetical protein BDI_1942 [Parabacteroides distasonis ATCC 8503]gi|149936980|gb|ABR43677.1| conserved hypothetical protein [Parabacteroides distasonis ATCC 8503]  ali follow..  13  53LQGT-WMYVNPALQLEGDNAL----KNVAGSLAATEAEKKMKEYCAKVG......................................................................................................................................................................................................................................................................................... 96
4 -2.810PB005346 A0R807_PELPD/1-258 PB005346; Pfam-B_5346;  ali follow..  1MTDSLWAQFHHNWMGMSQINQTTSGNFYSHRNITDQVLENFTDALDCTAHLMLECSEVLAGVKPANLISIVNRTRPCGRNLYLLSLLLLCYDHVRLEHHLSHPGIRTLLHKAGYKDDADCEGMLLELRSR-IGYPAKDVAFMGLLWK-------------IYGNPARSLALAEQYRCCRNKMGAILARGTSKTLEIDRSDHP................................................................................................................................ 244
5 -2.770PB000119 Q6KIT1_MYCMO/1-381 PB000119; Pfam-B_119;  ali follow..  13  196FFSSIFLSFISIFALTITFAYNSTFLNLAQIVRINTIRNEIFNF--------LNNLPIENGLLTVEAIWFL----QSKMELTDTATVIIINNTAYVNINKNSVKHNNFAV--------------------------NYLKSEENNWTGRDFPLLGLFVEKFFDDVEVFSPKIPALYFVVNNSTKNIFSSVGISSLS--TNNPKLIFTFTFDNGFS................................................................................................................... 381
6 -2.120PB053359 gi|153891307|ref|ZP_02012332.1| conserved hypothetical protein [Opitutaceae bacterium TAV2]gi|151582630|gb|EDN46158.1| conserved hypothetical protein [Opitutaceae bacterium TAV2]  ali follow..  14  12..GRSIAYRCGAFQLLAQMALRRELPEGVAPAQVRGALTAVIRRTLGAPGTFDNDTGNDGAG---------------------------------------RIGLAGHQPGLGEVYISTGSLYLCTTAFLPLGLPAS-----DDFWSQPD.................................................................................................................................................................................... 117
7 -2.000PB002770 Q744K2_MYCPA/1-559 PB002770; Pfam-B_2770;  ali follow..  11  3MQGDAQCVRGNRNTAWP-----------LAARLFPAMFALLMLVIAGTGSAAAQPSPWTARPFGDRLVGWDTYRRLD--LLPYLSADTQSLQLSSFDRSGGDFDISTGNKNGTGGCLAPGGAGCVIAEDHGAGE-------VDSIWLTRDGGN----IRVELDGQTVLDTPVQSLVDGWPLVANAGESPGGDRSMRISVESHLEYYHVDYRQ------------FPTAEGVSTFSPADPA-VDVLDRFRAAGTVDPKPAAPGEVHSNRVIELPGGAEQTIAESTGPASISALRLYLPAPADQSLTGLRLRIEFDGRTTVDSPL....... 310
8 -1.830HGC00965 gi|163282470|dbj|BABD01028218.1|2.0 TMP01310;  ali follow..  13  62LTVDLW---------PEPWTLDKTDPALRRREIFEEGRTAVAQYLNDAYNAEPERWSAHPSILDCEPWT-----PPAPEPDAETQ..................................................................................................................................................................................................................................................... 135
9 -1.820PB023339 Q8A4U7_BACTN/1-171 PB023339; Pfam-B_23339;  ali follow..  82.STEKWIYFKIDYAYSSNEITLVYARWNNSHRAYDDSVEKSVYELNDANMPI...................................................................................................................................................................................................................................................................................... 133
10 -1.620HGC00552 gi|162599220|dbj|BAAV01006262.1|2.0 TMP00636;  ali follow..  32.TGDVWSTASTQIKSVVDNVVFPAIDLILAVFFFAKLGTAYFEYFEWAAPAILFACLVFTLTAPMYLWSIIGI................................................................................................................................................................................................................................................................. 115

FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 1 0 5   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;