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Query: IDP91310 putative translocator protein PopB [Vibrio parahaemolyticus RIMD 2210633] VP1657 [Vibrio parahaemolyticus RIMD 2210633], from CSGID

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSSIALDRTQTQVYIPESGQTTLENVQKTASTATPSVTVENVKSRDADTLNTGRVKVQLDAPNAAVSDKVTDLTLKAMAQLQKIVDTIAKALHAVADQTGSIAVKIIAGSADDFEVELAAITDKLKSAQNELKIQEVKVAKAKHEQEMAENQEKIKESEAAAKEAQKSGLAAKIFGWISAVVSIVVGAIMVATGVGAAAGALMIAGGVMGAVSMALQEPAVQDALKEAGVNVDVLNKVVMALEIAVAVIGAIVTFGGAAAGGIAKLAAKSASKIAQKVTDIATKAAANMAKVADMGSKAATTTAKAIRYGAETVDLTVNIGKGATDSVHAANNANVTEIQADITDLRAKMTLSQAVIDKLKEEIGKLMEDFQELMSIIMQMIQAKSETMQTVLSRPATVLast
1 -3.710HGC00928 gi|162868028|dbj|BABB01001979.1|3.0 TMP01255;  ali follow..  13  9....................................................................................................................MARTATEKLEMRGQSVTVENIGKTVTDGFEKVSNNVNDFISSDKPRNFFQKLAVFVLVIGFILKFFIILAGIFLLPPLVLVVFILVVVTFALLMGGAGFIYNPFGADLINGAPLSMAIMGCIGTILFIGIPIFSLIY.................................................................................................................................................. 148
2 -3.590HGC00593 gi|162858151|dbj|BABB01011554.1|1.0 TMP00709;  ali follow..  11  1................................................................................................................................................MDMTDNNDDVLVKKSENRIDVPDDGFSRRVM-WTAVCVVIGLLIFFRNKGFSVLVSCFGIFSDVLARHEQL........................................................................................................................................................................................ 86
3 -2.980PB002104 Q72PH8_LEPIC/1-220 PB002104; Pfam-B_2104;  ali follow..  9  1...................................................................................................................................................MHNFKEKIQFSK--IRSRSCPFMQQNKFRKAIVAILMPMILVVSFGNC----GKFAIVKKVYEVNDGFNIGSGLLAKFIKTLVMYFPFSILYFVGFFFDLILFNLIEF--SGNNPVGYNEYDENGKYVKAYEENGEKLLLSYSD............................................................................................................ 138
4 -2.920PB003645 Q65HI2_BACLD/1-230 PB003645; Pfam-B_3645;  ali follow..  13  100...............................................................................................................QEYENQLKDILETIIGVED-VNVDATSLKIFEKNRKTQETSTNETDKQGGKRTVSEMSSDEEIV--VVQTKKPDIGVLVVAQGVDNVQ----IKKTIIEAVTRVLDVPSHRVAVAPKKMKED...................................................................................................................................................................... 230
5 -2.570PB053244 _HOMD.0087087_ pint_c_2_2642 Prevotella intermedia 17 [158005 - 157583] (REVERSE SENSE) ORF  ali follow..  12  4................................................................................................................................................................................YAIGGLLMAVGTGLYAFFIIQDVACIVMLIGAICFATMQMRQQ-----YLGTNLTIRRLRKIMVLADIGFILAGLFM.................................................................................................................................................. 75
6 -2.490HGC00509 gi|162658693|dbj|BAAX01000912.1|3.0 TMP00561;  ali follow..  22  10.................................................................................................................FHVLLLICNRELLLIGKRKDEDDMAKSTKTYEERIRALEKKEQESIEATKKAQRKELEKR----IGGAVESVLG.................................................................................................................................................................................................................... 96
7 -2.390PB045072 _Gut.Meta.Jp.0111663_ gi|163310555|dbj|BABD01000145.1||3 (+ 1662:2028~0 complete)  ali follow..  10  36..................................................................................................................TINKAKLTKYLQSSQQNEQVASICDYFQEQMKVANSSKKNSDQKVRNAVYGNLKLMKNTL................................................................................................................................................................................................................................. 96
8 -2.350HGC00921 gi|162841401|dbj|BABA01003308.1|3.0 TMP01242;  ali follow..  13  21...................................................................................................................VVKGDMCDVYDLPVSLKTLGEARIFLSKFETAHSYYVHCYGEQSRNSKKHQANVKTARLY------ISHFIQVLNLA-----------VIRMEIKESHKAL-------GLPVDNFSVPDLSSEASLAEWGQKIIE-------GERKRTSQGGIPIYNPTIAKVKVHYDIFMEGYEKQKSLQSLTNRSLEQLASMRVQADRLILDIWN----------QVEAKFQDVSPNEKRLEKCRDYGLIIIIGPE-KNRIRRFFKICLSIHIPI----KSLQKITFR.... 258
9 -2.300PB155142 _HOMD.0127537_ bfor_c_1_1790 Tannerella forsythia ATCC 43037 [677748 - 680894] ORF  ali follow..  24  13......................................................................................................................................................NPEDI-ESQTILKDAAATA----LYGSRGA------GVVLITTKSGRRGKTHIAFTAEYGTSDFATPH..................................................................................................................................................................................... 70
10 -2.040PB038151 Q8A4A5_BACTN/1-178 PB038151; Pfam-B_38151;  ali follow..  10  1...................................................................................................................................................MATQAIDATIFASSHPDIAKRTSISGL---LISCVMLLIGILSFAS-------------------------------TFELEDKSSTVSMALMVFGTGLFLLGIFRLFWKSKEVVYVPTGSIAKERSIFFDLKHMDKLTDLVNS............................................................................................................ 110
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 9 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Jaroszewski L, Li W, Godzik A. A segment alignment approach to protein comparison. Bioinformatics. 2003 Apr 12;19(6):742-9.