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Query: IDP91490 putative type III export protein PscD [Vibrio parahaemolyticus RIMD 2210633] VP1695 [Vibrio parahaemolyticus RIMD 2210633], from CSGID

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MQQWKIRILSGVHSGVEVTLPEGALVLGSDDFIADLVLSDAGVEANHFTLVCDSESVMLRGCQDVTINGENRAVGESGIELERHAVISVGVVKFALGYVEDELIVTNVTDAQTKQDAPVVTAQSTSWKRTALIAVLCSAIPSAIFAGMWYSQANGNDSEVVAEAEPIVLVRNILNELGLNDVRVEWNATAHQAVLEGYVEDRTQKLQLLGRIDVLGINYKSDLRTMEEIRRGVRFILRNLGYHQVKVENGDETGTLLLTGYIDDASKWNQVEQILERDVPGLVAWKVELQRAGAYMDTLKELLTNAELLKKVQLVTSGDRIEVRGELDDIETTRFYGVTRDFREQYGEKPYLVLKSIPKVSKGTDIDFPFRSVNFGQVPYVILTDNVRYMVGARTPQGYRISSVTPAGIELVKGGRVITIELGYEGEKNHDKSLast
1 -4.360PB009671 Q5LCM2_BACFN/1-111 PB009671; Pfam-B_9671;  ali follow..  15  42..................................................................................................................................................................................................................................................................................................................................................................................TKITVKELPQVVKSTLSKDYEGTIVKENGKVYKIIVTAIKEDQSTEEITVLLNEKGEPVNEKD 111
2 -2.810PB030138 Q7MX14_PORGI/1-113 PB030138; Pfam-B_30138;  ali follow..  7  23........................................................................................................................................................................................................................................................................................................................................DQRRDELEKRIERIRREVEQEEQAELDGQSSSHDYSGYRPRIRGTFVEGTQHLKERQLQGETQSTRSGRTLRTLAL............................. 98
3 -2.750HGC00683 gi|163310582|dbj|BABD01000118.1|4.0 TMP00861;  ali follow..  11  28.....................................................................................................................................................................................................................................................................NVTLTPSEEVVNAFQQKYPDVKNVKWEILVGSGTYSENGQHIVLDKVEAQAYITQGGKWVRSEFDVTKDYQDSSLVVPRAVRETIAAKGKKVDDVKLFDWSDRNDYFYVE-FDEPDSELLINFDGTLY............................................ 163
4 -2.470PB006933 gi|1881301|dbj|BAA19328.1| SIMILAR TO ORF13 OF ENTEROCOCCUS FAECALIS TRANSPOSON TN916. [Bacillus subtilis]  ali follow..  11  106.......................................................................................................................................................................................................SIEKRMQSLESYMVKQEDNHFEDEERFNVDGLKGDRELKGYSLYNVKEGDKNSLFQYKVTYENLYPVEKEXXXXXXXXXXXXXXXXXXXXXXXYEKQMLLN-----------IPVTNKGDSFAVSAEYAGEKKESIESFLQNFFEKY------------ASEKKEEMVYMMKKP-------------------EALEGNLLFGEVQSVKIFETKKGFEVFCAVRFKEKEND... 318
5 -2.260PB009510 _JGI.0345302_ 2004041369 [Human Gut Community Subject 8]  ali follow..  8  69.........................................................................................................................................................................................................QERRQAIYEKRDYHSPMTPYIMERYLENATGFTVHIADCHDAGPLKYKPPHPNVFKAFFNGDGTLDSKKVRKLIDKLKESHTTYFVNDYSMFEIVFSEKFMVSNIGLLFKIPFWKADGSHLMDAAIEYEMRLGVKYKEGEFRIAETLDIERMTARAKVPLSEKMHIEKQTVSAKAFNWQSLFFDGSVPMDGNLLMNYSISESYGNATCTVKRN----SLKMNGSRLLNSL.. 325
6 -2.070HGC01213 gi|163579070|dbj|BABE01006032.1|2.0 TMP01709;  ali follow..  6  92..................................................................................................................................................................................................................................................................................................................................................................AISRDATPAPKKVSNVKDCSASDVTLQLSAASQSVPVGGSLDFTATIVHEGSGNYLVDGSDSGRVLTITSGQE...... 164
7 -1.940PB045072 _Gut.Meta.Jp.0111663_ gi|163310555|dbj|BABD01000145.1||3 (+ 1662:2028~0 complete)  ali follow..  10  34......................................................................................................................................................................................................................................................................DGTINKAKLTKYLQLSSQQNEQVASICDYFQEQMKVANSSKKNS--DQKVRNAVYGNLKLMKNTLTEKQYSDYLRLMALTLRNKG...................................................................................... 116
8 -1.920PB010473 Q8A4J5_BACTN/121-234 PB010473; Pfam-B_10473;  ali follow..  9  2..........................................................................................................................................................................................................................................................................................................................................................................................AFLLPLEAMEYEINKGAGNPLEFKGLKSQYLFIFAGGLVAVLLV........... 45
9 -1.830PB050904 Q64SA2_BACFR/1-230 PB050904; Pfam-B_50904;  ali follow..  6  35..............................................................................................................................................................................................................................................................TALAEGNELINGQIEKQIKGQTQTALLQNSIATEFNQIHKWEKQYNSYLKT--ASGYASSLKACTHLYNDGVRIFLTLGKLGKAIQNNPQGIVASMNMNNLYIETATELVSVFTLLNDAVAKGSNENMLTGAERSKT---------LWALNDQLSDFSRKLHLLYLSIR.......... 192
10 -1.770PB011051 Q8A0P0_BACTN/1-227 PB011051; Pfam-B_11051;  ali follow..  13  23................................................................................................................................................................................................................................................................SIMGPINFEKAKKEREQAVIARLIDIRKAQQEYRSLHEHFDTLIDFVKNQKLPFVMKVGQLTDDQLESGLTEKKAMAIINKAKKTGKYDEVKKNGLENFKRDTMWVAVMDTIYPKGFNADSMKYIPYGNGAIF-VKNDTAKS--LGGLDRQEII-EKLGRYSGLMVGSIDNPNNGAG 225
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 9 3 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;