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Query: IDP04699 gene: yscD; virulence protein [Yersinia pestis CO92] YPCD1.53 [Yersinia pestis CO92], from CSGID

Results of FFAS03 search in NEW_HUMAN_DOMAINS
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSWVCRFYQGKHRGVEVELPHGRCVFGSDPLQSDIVLSDSEIAPVHLVLMVDEEGIRLTDSAEPLLQEGLPVPLGTLLRAGSCLEVGFLLWTFVAVGQPLPETLQVPTQRKEPTDRLPRSRLGIGLGVLSLLLLLTFLGLLGHGLWREYNQDGQLVEQEVRRLLATAAYKDVVLTSPKKEGEPWLLTGYIQDNHARLSLQNFLESHGIPFRLELRSMEELRQGAEFILQRLGYHGIEVSLAPQAGWLQLNGEVSEEIQKQKIDSLLQAEVPGLLGVESKVRIAGNQRKRLDALLEQFGLDSDFTVNVKGELIELRGQVNDEKLNSFNQLQQTFRQEFGNRPKLELVNVGGQPQHDELNFEVQAISLGKVPYVVLDNHQRYPEGAILNNGVRILAIRRDAVIVSKGKREFVIQLNGGKPRLast
1 -5.270sp|Q8TDB6|DTX3L_HUMAN E3 ubiquitin-protein ligase DTX3L OS=Homo sapiens GN=DTX3L PE=1 SV=1  ali   10  16.............................................................................................................................................................................................................................DKINSIEKRFGVNIEIQESSPNMVCLDFTS--SRSGDLEAARESFASEFQKNTEPLKQECVSLADSKQANKFKQENHQFTKLLIKEKGGELTLLG--TQDDISAAKQKISEAFVKIPVKLFAANYMMNVIEVDSAH------------KLLETELLQE------------ISEIEKRCSKVSEKGQKTCILFESKDRQ 190
2 -4.450sp|Q9NTG1|PKDRE_HUMAN Polycystic kidney disease and receptor for egg jelly-related protein OS=Homo sapiens GN=PKDREJ PE=2 SV=2  ali   1...................................................................................................................................................................................................................................................................EIVSTGILMSLSNILKMTSPVKDPFYVIESLSDTILANKVPGNKTTSMRTPNFNMY--VKKVEKWGINQLFRN-EKHCRNCFYPTLNVSSVPGLSANGPISTMFCDFTNDLFPWLNDQENT-SVEVS--GFRMTGVADNGSVLEITPDVAEVYLVRKN.. 155
3 -4.400sp|Q5PSV4|BRM1L_HUMAN Breast cancer metastasis-suppressor 1-like protein OS=Homo sapiens GN=BRMS1L PE=1 SV=2  ali   16  1...................................................................................................................................................................................................................................................................................................................................................................................ARSEEGRLYYDGEWYIRG-VITTINHDEVWFKRDGSKSKLYIS..... 58
4 -4.320sp|Q04912|RON_HUMAN Macrophage-stimulating protein receptor OS=Homo sapiens GN=MST1R PE=1 SV=2  ali   13  1..........PPSANLVPLKPEEHAIKFEYIGLGAVADCVGIN-----VTVGGESCQHEFRGDMVVCPLPPSLQLGQDGAPLQVCVDGECHILGRVVRPGPDGVPQST....................................................................................................................................................................................................................................................................................................................... 93
5 -4.280sp|Q96PW8|K1920_HUMAN Uncharacterized protein KIAA1920 OS=Homo sapiens GN=CSPG4P5 PE=5 SV=2  ali   12  6.TFHCEVVQAPRKG-NFQLQGTMLSDGQGFTQDDV--RASVAVEDTFCFHVTAPPYFSPLCTFSIHIGGDPLTNVLVVPEGGGCVLSADQLFVKSLNSA................................................................................................................................................................................................................................................................................................................................ 115
6 -4.080sp|P98088|MUC5A_HUMAN Mucin-5AC (Fragments) OS=Homo sapiens GN=MUC5AC PE=1 SV=3  ali   22  1.....................................................................................................................................................................................................................................................................................................................................................................................TYNGQRFHPGDVIYHGGCISARCGANGTIER............... 36
7 -3.930tr|F8WDW8|F8WDW8_HUMAN Uncharacterized protein OS=Homo sapiens GN=CASD1 PE=4 SV=1  ali   52....................................................................................................................................................................................................................................................................................................................................................................................LLSSGRFLGEKVWQPHSCMMHKYKISMKTFLLKTRLHQLKWI..... 93
8 -3.920sp|Q8N2E2|VWDE_HUMAN von Willebrand factor D and EGF domain-containing protein OS=Homo sapiens GN=VWDE PE=2 SV=4  ali   11  1.............................................................................................................................................................................................................................................................................................................EVLVELIESRLFCRCSFDVPATKNSVGFHIAWSRLSSQEVKEELTQETTVQAFSLLELDGINLRLGDRIFCSASESQEFFAG---------FKLQPELSTISEDGKEYYLRIESTVP. 122
9 -3.900sp|Q7Z442|PK1L2_HUMAN Polycystic kidney disease protein 1-like 2 OS=Homo sapiens GN=PKD1L2 PE=1 SV=4  ali   11  3............................................................................................................................................................................................................................................................................................RVMEHVQTTLLLGKLPGGLPAMLATPSISVY--TNRIQPWSWQGSSLRPDAADSATFMLPAASSLSSLEGGQEPVDIKIMSFPKSPFPARSHFD--VSGTVG--GLRVTSPSGQLIPVKNLSENIEILLPRHSQ. 130
10 -3.870sp|Q9HC84|MUC5B_HUMAN Mucin-5B OS=Homo sapiens GN=MUC5B PE=1 SV=3  ali   16  5.........................................................................................................................................................................................................................................................................................................................................................................FPSSHFSTPCFCRAFGQFFSPGEVIYNGCHFYAVCNQHCDIDR............... 52

FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 6 1 7   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Rychlewski L, Zhang B, Godzik A. Fold prediction by a hierarchy of sequence, threading, and modeling methods. Protein Sci. 1998 Jun;7(6):1431-40.