current user: public

If you have questions about the server, please let us know.

Query: IDP05533 hypothetical protein CD2149 [Clostridium difficile 630] CD2149 [Peptoclostridium difficile 630], from CSGID

Results of FFAS03 search in NEW_HUMAN_DOMAINS
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    .  260    .  270    .  280    .  290    .  300    .  310    .  320    .  330    .  340    .  350    .  360    .  370    .  380    .  390    .  400    .  410    .
# Score Template Links and tools%idFirst MGRRTTRVSRLGKEKKRSVLIVLAALVLIMGGFTYFFNSKFLYNGKIAKNVYIEGVNVSDMTKAEALKAITDKYTPEDLNLAYDGKKYTISPKDIDLKYDTEDVVKDAYESTKKGSYFQNLKKYIDIRVNKANMKIKAEYDEAKLSSKVSSIADSINVKMKNASISVGSGGLSYTDSVVGREFDLAANKESIYNMIKNKEHKTLELKVNLQKPDITTEQVKTVNSVIGQYSTTYSQAVEGRSYNVGLSARKTSDVLLMPGEEFSYNKLTGPSNKANGYKDAPVIVYGKLEQSAGGGVCQTSSTVYNAALLSGMEITQVTNHSSASTYVPKGRDATVSDGGLNLKFKNPYKHPVYIKNYAGGGSVSSVIYGNSGDKPNISIEVKQTGQNKYSTYRIFKDSNGKVIKKEHISNSSYKELKKLast
1 -5.640sp|Q8TC71|MIEAP_HUMAN Mitochondria-eating protein OS=Homo sapiens GN=SPATA18 PE=1 SV=1  ali   11  2...............................................................................................................................................................................................................AENLKRLVSNETLRTLQEKLDFWLKEYNTNTCDQ--NLNHCLELIEQVAKVQGQLFG---ILTAAAQEGGRNDGVETIKSRLLPWLEASFTAASLGKSVDSKVPSLQ......................................................................................................... 103
2 -4.750sp|O43790|KRT86_HUMAN Keratin, type II cuticular Hb6 OS=Homo sapiens GN=KRT86 PE=1 SV=1  ali   17  7..................................................................................................................................................................................................................................CGGRAFSCISACGPRPGRCCITAAPYRGISCYRGLTGGF----GSHSVCGGFRAGSC---GRSFGYRSGGVCGPSPPCITT................................................................................................................ 80
3 -4.550sp|Q15751|HERC1_HUMAN Probable E3 ubiquitin-protein ligase HERC1 OS=Homo sapiens GN=HERC1 PE=1 SV=2  ali   32  10..................................................................................................................................................................................................................................................................PG--------CGRSANRQGYRS-----NGSYVDGWFGGECGSGNPYY.................................................................................................................. 43
4 -4.510tr|E9PC37|E9PC37_HUMAN Uncharacterized protein OS=Homo sapiens GN=EFHC2 PE=4 SV=1  ali   19  2.............................................................................................................................................................................................................................................................ALPLLPGNSFNRNKEKFHKSQHWGFCNNVMMLVSDEKPGIGGEPLLGQKSIY.................................................................................................................. 60
5 -4.510sp|Q5JST6|EFHC2_HUMAN EF-hand domain-containing family member C2 OS=Homo sapiens GN=EFHC2 PE=1 SV=2  ali   19  2.............................................................................................................................................................................................................................................................ALPLLPGNSFNRNKEKFHKSQHWGFCNNVMMLVSDEKPGIGGEPLLGQKSIY.................................................................................................................. 60
6 -4.380sp|Q14533|KRT81_HUMAN Keratin, type II cuticular Hb1 OS=Homo sapiens GN=KRT81 PE=1 SV=3  ali   17  7..................................................................................................................................................................................................................................FGGRAFSCISACGPRPGRCCITAAPYRGISCYRGLTGGF----GSHSVCGGFRAGSC---GRSFGYRSGGVCGPSPPCITT................................................................................................................ 80
7 -4.300sp|Q9HC84|MUC5B_HUMAN Mucin-5B OS=Homo sapiens GN=MUC5B PE=1 SV=3  ali   18  1................................................................................................................................................................................................................................................RPTGFPSSHFSTPCFCRAFGQFFSPGEVIYNKTDRAGC-----------------AVCNQHCDI................................................................................................................... 50
8 -4.170sp|Q92615|LAR4B_HUMAN La-related protein 4B OS=Homo sapiens GN=LARP4B PE=1 SV=3  ali   15  3...........................................................................................................................................................................................................................................................................AINTFLPKNGFRPLDVSLYAQ----------RYATSFYFPPMYSPYSLITPQTWSATHSYLDPPLVTPFPNTG----FINGFTSPAF................................................................. 82
9 -4.170sp|Q5JVL4|EFHC1_HUMAN EF-hand domain-containing protein 1 OS=Homo sapiens GN=EFHC1 PE=1 SV=1  ali   16  1......................................................................................................................................................................................................................................................MVSNPVHGLPFLPGTSFDSTKTAFHRSQTLSYRNGYAIVRRPTV-GIGGDRLQFNQLSQAEL............................................................................................................... 62
10 -4.160tr|F8W1D1|F8W1D1_HUMAN Uncharacterized protein OS=Homo sapiens GN=PMEL PE=4 SV=1  ali   15  22......................................................................................................................................................................................................................................RQLYPEWTEAQRLDCWRGSQVWGGQPVYPDDACIFPDGGPCPSGSWSQKRSFVYV-GQYWQVLGGPVSGLSIGTGRAMLGTHTMEVTVYHRRGSRSYVPLAHSSSA--------FTITDQVPFSVSVSQLRAL........................................................ 152

FFAS is supported by the NIH grant R01-GM087218-01
1 4 0 1 8 1   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Wooley JC, Godzik A. Probing metagenomics by rapid cluster analysis of very large datasets. PLoS ONE. 2008;3(10):e3375. Epub 2008 Oct 10.