Scheduled maintenance will begin on May 30th, 2025. Server will be temporarily unavailable — learn more.
current user: public
If you have questions about the server, please let us know.

Query: IDP90920 gene: glyQ; glycyl-tRNA synthetase subunit alpha [Vibrio cholerae O1 biovar eltor str. N16961] VC0021 [Vibrio cholerae O1 biovar El Tor str. N16961], from CSGID

Results of FFAS03 search in NEW_HUMAN_DOMAINS
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    .  260    .  270    .  280    .  290    .  300    .  310    .  320    .  330
# Score Template Links and tools%idFirst MSGNIWVYFSVIFYQFRQKNRANLTMQKYDIKTFQGMILALQDYWAQQGCTIVQPLDMEVGAGTSHPMTCLRALGPEPIATAYVQPSRRPTDGRYGENPNRLQHYYQFQVIIKPSPDNIQELYLGSLRVLGVDPCVHDIRFVEDNWENPTLGAWGLGWEVWLNGMEVTQFTYFQQVGGLECKPVTGEITYGIERLAMYIQGVDSVYDLVWTDGPLGKVTYGDIFHQNEVEQSTYNFEHADVDFLFTYFDQCEKECKYLLELEKPLPLPAYERILKAAHAFNLLDARKAISVTERQRYILRIRNLTKSVAEAYYASREALGFPMCKKSEQKLast
1 -6.210sp|Q8IYX3|CC116_HUMAN Coiled-coil domain-containing protein 116 OS=Homo sapiens GN=CCDC116 PE=2 SV=2  ali   18  12.................................................................................................................................................................................................................................................QEPIFRKREFNKEIKSLLSQLESLDLPGYCPLREPHRTLNFLADHRLFPA---------LQSVVSQAVDKLRGAHCRDGRPLFPTS... 88
2 -5.890sp|Q8N0W7|FMR1N_HUMAN Fragile X mental retardation 1 neighbor protein OS=Homo sapiens GN=FMR1NB PE=1 SV=1  ali   10  5..........SYFVLANGHILPNSENAHGQSLEEDSALEALLNFFFPTTCNLRENQVAKP.............................................................................................................................................................................................................................................................................. 54
3 -5.800sp|Q9HAZ2|PRD16_HUMAN PR domain zinc finger protein 16 OS=Homo sapiens GN=PRDM16 PE=1 SV=3  ali   8  2..........................KAKPSPSLNHASLGFNEYFPSRPHPGSLPFSTAPPTFPALTPGFPGIFPP.............................................................................................................................................................................................................................................................. 51
4 -5.420sp|Q14699|RFTN1_HUMAN Raftlin OS=Homo sapiens GN=RFTN1 PE=1 SV=4  ali   13  2...........................................................................................................FTLFNKPKSHQKCRQYYPVTIPLHVSKNGQTVSGLDANW-------LEHMSDHFRKGGMLVN-AVFYLGIVNDSLHGLTDGVFIFEAVSTEDSKTIQGYDAIVVE...................................................................................................................... 98
5 -5.350sp|Q9Y4C2|F115A_HUMAN Protein FAM115A OS=Homo sapiens GN=FAM115A PE=1 SV=3  ali   10  1.....WEPFIRLFTEYRNQTNLPTENVDKMKMFSHQVQKNLAPFFEAWAWPIQKEVATSLAYLP.......................................................................................................................................................................................................................................................................... 63
6 -5.300tr|B4DK02|B4DK02_HUMAN Uncharacterized protein OS=Homo sapiens GN=FAM115C PE=2 SV=1  ali   13  1.....WEPFTQLFAEYQTLSHLPKDNTGRMKKFSEKVKKNLVPFFEAWGWPIQKEV.................................................................................................................................................................................................................................................................................. 55
7 -5.300sp|A6NFQ2|F115C_HUMAN Protein FAM115C OS=Homo sapiens GN=FAM115C PE=2 SV=2  ali   13  1.....WEPFTQLFAEYQTLSHLPKDNTGRMKKFSEKVKKNLVPFFEAWGWPIQKEV.................................................................................................................................................................................................................................................................................. 55
8 -4.850sp|P58107|EPIPL_HUMAN Epiplakin OS=Homo sapiens GN=EPPK1 PE=1 SV=2  ali   4  22...SLWDLLLSEYVGADKRRELVALCRSGRAAALRQVVSAVTALVEAA.......................................................................................................................................................................................................................................................................................... 66
9 -4.810sp|Q7Z570|Z804A_HUMAN Zinc finger protein 804A OS=Homo sapiens GN=ZNF804A PE=1 SV=3  ali   11  10.........QQFLSQIPALTRTSLPQLSVGPVGPRLCPGNQPTFVAPPQMPIIPASVLHPSHLAFLPHALFPSLLSPHPTVIPLQPLF.................................................................................................................................................................................................................................................. 90
10 -4.550sp|Q86XA9|HTR5A_HUMAN HEAT repeat-containing protein 5A OS=Homo sapiens GN=HEATR5A PE=1 SV=2  ali   6  14..SRLWLAALQDFALLTPSEFASQLPAEGGAFYTAETSENAKLHYYNSWALILHATALWLTSTGF......................................................................................................................................................................................................................................................................... 77
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 1 0 5   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;