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Query: IDP00328 gene: murI; glutamate racemase Cj1652c [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819], from CSGID

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKIGVFDSGVGGLSVLKSLYEARLFDEIIYYGDTARVPYGVKDKDTIIKFCLEALDFFEQFQIDMLIIACNTASAYALDALRAKAHFPVYGVIDAGVEATIKALHDKNKEILVIATKATIKSEEYQKRLLSQGYTNINALATGLFVPMVEEGIFEGDFLQSAMEYYFKNITTPDALILACTHFPLLGRSLSKYFGDKTKLIHSGDAIVEFLKERENIDLKNHKAKLHFYASSDVESLKNTAKIWLNLLRKLast
1 -97.9003uhf_A mol:protein length:274 Glutamate racemase  ali model follow..  100  19MKIGVFDSGVGGLSVLKSLYEARLFDEIIYYGDTARVPYGVKDKDTIIKFCLEALDFFEQFQIDMLIIACNTASAYALDALRAKAHFPVYGVIDAGVEATIKALHDKNKEILVIATKATIKSEEYQKRLLSQGYTNINALATGLFVPMVEEGIFEGDFLQSAMEYYFKNITTPDALILACTHFPLLGRSLSKYFGDKTKLIHSGDAIVEFLKERENIDLKNHKAKLHFYASSDVESLKNTAKIWLNLLRK 268
2 -93.4002jfx_A mol:protein length:255 GLUTAMATE RACEMASE  ali model follow..  54  1MKIGVFDSGVGGFSVLKSLLKARLFDEIIYYGDSARVPYGTKDPTTIKQFGLEALDFFKPHEIELLIVACNTASALALEEMQKYSKIPIVGVIEPSILAIKRQVEDKNAPILVLGTKATIQSNAYDNALKQQGYLNISHLATSLFVPLIEESILEGELLETCMHYYFTPLELPEVIILGCTHFPLIAQKIEGYFMGHFALIHSGDAIVEYLQQKYALKNACTFPKVEFHASGDVIWLERQAKEWLKL... 255
3 -89.8005w1q_A mol:protein length:275 Glutamate racemase  ali model follow..  53  15MKIGVFDSGVGGFSVLKSLLKAQIFDKIIYYGDSARVPYGTKDPTTIKQFGLEALDFFKPHKIELLIVACNTASALALEEMQKHSKIPIVGVIEPSILAIKQQVKDKNAPILVLGTKATIQSNAYDNALKQQGYLNVSHLATSLFVPLIEENILEGELLETCMRYYFTPLELPEVVILGCTHFPLIAQKIEGYFMEHFALIHSGDAIVEYLQQKYTLKKNCTFPKVEFHASGDVVWLEKQAKEWLKL... 269
4 -88.3001b73_A mol:protein length:254 GLUTAMATE RACEMASE  ali model follow..  41  1MKIGIFDSGVGGLTVLKAIRNRYRKVDIVYLGDTARVPYGIRSKDTIIRYSLECAGFLKDKGVDIIVVACNTASAYALERLKKEINVPVFGVIEPGVKEALKK--SRNKKIGVIGTPATVKSGAYQRKLEEG-GADVFAKACPLFAPLAEEGLLEGEITRKVVEHYLKEFKKIDTLILGCTHYPLLKKEIKKFLG-DAEVVDSSEALSLSLHNFI---KDDGSSSLELFFTDLSPNLQFLIKLILG.... 240
5 -87.5005hj7_A mol:protein length:273 Glutamate racemase  ali model follow..  31  9.PVGVFDSGVGGLTVARAIIDQLPDEDIVYVGDTGNGPYGPLTIPEIRAHALAIGDDLVGRGVKALVIACNSASSACLRDARERYQVPVVEVILPAVRRAVAA--TRNGRIGVIGTRATITSHAYQDAFAAARDTEITAVACPRFVDFVERGVTSGRQVLGLAQGYLEPLAEVDTLVLGCTHYPLLSGLIQLAMGENVTLVSSAEETAKEVVRVLTEIDDAPPATRIFEATGDPEAFTKLAARFLG.... 258
6 -87.1002gzm_A mol:protein length:267 Glutamate racemase  ali model follow..  34  5.AIGVIDSGVGGLTVAKELIRQLPKERIIYLGDTARCPYGPRSREEVRQFTWEMTEHLLDLNIKMLVIACNTATAVVLEEMQKQLPIPVVGVIHPGSRTALKV--TNTYHVGIIGTIGTVKSGAYEEALKSNNRVMVESLACPPFVELVESGNFESEMAYEVVRETLQPLTDIDTLILGCTHYPILGPVIKQVMGDKVQLISSGDETAREVSTILYLNEGEEQSDHLFLTTGKIGLFKEIASKWFG.... 254
7 -86.5003hfr_A mol:protein length:269 Glutamate racemase  ali model follow..  35  7.AIGFIDSGVGGLTVVREVLKQLPHEQVYYLGDTARCPYGPRDKEEVAKFTWEMTNFLVDRGIKMLVIACNTATAAALYDIREKLDIPVIGVIQPGSRAALKA--TRNNKIGVLGTLGTVESMAYPTALKGNRRVEVDSLACPKFVSVVESGEYKSAIAKKVVAESLLPLTKIDTVILGCTHYPLLKPIIENFMGDGVAVINSGEETASEVSALLDLDATDEEIEHRFFTTGSTQIFKDIAKDWLN.... 256
8 -86.4002dwu_A mol:protein length:276 Glutamate racemase  ali model follow..  33  9.VIGVLDSGVGGLTVASEIIRQLPKESICYIGDNERCPYGPRSVEEVQSFVFEMVEFLKQFPLKALVVACNTAAAATLAALQEALSIPVIGVIHPGARAAIKV--TKKGKIGVIGTVGTIQSNMYEKALHEDTYLKVHSHACPTLATVVENRLEDTAYVTQQVKQALLPLEDIDTLILGCTHYPLLESYIKKELGEDVTIISSAEETAIELSTILQHKADNLNPKHRFFTTGSVSSFEHIAERWLG.... 257
9 -86.4002oho_A mol:protein length:273 Glutamate Racemase  ali model follow..  31  14.PIGFLDSGVGGLTVVCELIRQLPHEKIVYIGDSARAPYGPRPKKQIKEYTWELVNFLLTQNVKMIVFACNTATAVAWEEVKAALDIPVLGVVLPGASAAIKS--TTKGQVGVIGTPMTVASDIYRKKIQLAPSIQVRSLACPKFVPIVESNEMCSSIAKKIVYDSLAPLVGIDTLVLGCTHYPLLRPIIQNVMGPSVKLIDSGAECVRDISVLLNYFDHQKAVEHRFFTTANPEIFQEIASIWLK.... 263
10 -86.2001zuw_A mol:protein length:272 glutamate racemase 1  ali model follow..  34  5.PIGVIDSGVGGLTVAKEIMRQLPKENIIYVGDTKRCPYGPRPEEEVLQYTWELTNYLLENHIKMLVIACNTATAIALDDIQRSVGIPVVGVIQPGARAAIKV--TDNQHIGVIGTENTIKSNAYEEALLANPDLKVENLACPLLVPFVESGKFLDQTADEIVKTSLYPLTSIDSLILGCTHYPILKEAIQRYMGEHVNIISSGDETAREVSTILSLNQSPIAPDHQFLTTGARDQFAKIADDWFG.... 255
11 -85.6002jfo_A mol:protein length:293 GLUTAMATE RACEMASE  ali model follow..  35  20.AIGLIDSGVGGLTVLKEALKQLPNERLIYLGDTARCPYGPRPAEQVVQFTWEMADFLLKKRIKMLVIACNTATAVALEEIKAALPIPVVGVILPGARAAVKV--TKNNKIGVIGTLGTIKSASYEIAIKSAPAIEVTSLACPKFVPIVESNQYRSSVAKKIVAETLQALKGLDTLILGCTHYPLLRPVIQNVMGSHVTLIDSGAETVGEVSMLLDYFDEAPTQPHEFYTTGSAKMFEEIASSWLG.... 270
12 -85.5002jfu_A mol:protein length:291 GLUTAMATE RACEMASE  ali model follow..  33  21.PIGFIDSGVGGLTVVKEALKQLPNENILFVGDTARCPYGPRPAEQVIQYTWEMTDYLVEQGIKMLVIACNTATAVALEEIKAALSIPVIGVILPGTRAAVKK--TQNKQVGIIGTIGTVKSQAYEKALKEKPELTVTSLACPKFVSVVESNEYHSSVAKKIVAETLAPLKKIDTLILGCTHYPLLRPIIQNVMGENVQLIDSGAETVGEVSMLLDYFNQNGRTLCQFYTTGSAKLFEEIAEDWLG.... 271
13 -84.8005ijw_A mol:protein length:279 Glutamate racemase  ali model follow..  32  9.PIGIFDSGVGGLTVARAIIDQLPDEDIVYVGDTGNGPYGPLTIPQIRAHSLAIGDDLVSRGVKALVIACNTASSACLRDARERYPVPVVEVILPAVRRAVAA--TRNGRIGVIGTQATIASGAYQDAFAAARDTEVFTVACPRFVDFVERGVTSGRQVLGLAEGYLEPLAEVDTLVLGCTHYPMLSGLIQLAMGDNVTLVSSAEETAKDLLRVLTELDPSVTAVRRFEATGDPEAFTALAARFLG.... 262
14 -84.5002jfq_A mol:protein length:286 GLUTAMATE RACEMASE  ali model follow..  33  18.PIGVIDSGVGGLTVAKEIMRQLPNETIYYLGDIGRCPYGPRPGEQVKQYTVEIARKLMEFDIKMLVIACNTATAVALEYLQKTLSISVIGVIEPGARTAIMT--TRNQNVLVLGTEGTIKSEAYRTHIKRNPHVEVHGVACPGFVPLVEQMRYSDPTISIVIHQTLKRWSESDTVILGCTHYPLLYKPIYDYFGGKKTVISSGLETAREVSALLTHASYTEHPDHRFFATGDTTHITNIIKEWLN.... 268
15 -83.8005w16_A mol:protein length:278 Glutamate racemase  ali model follow..  31  22.PIGVFDSGVGGLTVLKALRRLLPREEFLYFGDTARVPYGGKPLAMVRRFAWEIAGFLLRQGVKAIVVACNTASSAALPDLAEDLSVPVFGVVEPAARAA-----RGFRKVGLIGTQATVESGAYPRYVDL-----AWAKACPLFVPLVEEGLWDDPVALLVARHYLEDAKDLEALILGCTHYPFLKGAIGAVLP-GVALLDSAELTAQEVARALEAENPEGRGRTFHLVTGDPEAYRALAERLGE.... 259
16 -81.8003out_A mol:protein length:268 Glutamate racemase  ali model follow..  33  9.PIGVFDSGIGGLTIVKNLMSILPNEDIIYFGDIARIPYGTKSRATIQKFAAQTAKFLIDQEVKAIIIACNTISAIAKDIVQEIAAIPVIDVITAGVSLV-----DNLNTVGVIATPATINSNAYALQIHKNPNIEVYSNPCGLFVSMIEEGFVSGHIVELVAKEYLSYFKNIQALILGCTHYPIIKESIAKILD--VKLIDPSLQASKMLYSLLFLNTTKSNPEYRFYVTDIPLKFRSVGEMFLQ.... 254
17 -79.8002jfn_A mol:protein length:285 GLUTAMATE RACEMASE  ali model follow..  27  23.TVLVFDSGVGGLSVYDEIRHLLPDLHYIYAFDNVAFPYGEKSEAFIVERVVAIVTAVQERPLALAVVACNTASTVSLPALREKFDFPVVGVV-PAIKPAARL--TANGIVGLLATRGTVKRSYTHELIARFNECQIEMLGSAEMVELAEAKLHGEDVSLDALKRILRPWEPPDTVVLGCTHFPLLQEELLQVLPEGTRLVDSGAAIARRTAWLLEHEAKSADANIAFCMAMTPEQLLPVLQRYGF.... 275
18 -27.8005wxx_A mol:protein length:260 McyF  ali model follow..  18  11..LGV----LGGMGFLKSIYEYNPFID-VIVFSFPSAP--DSGKEREFIDFIQVNLEHLNKLADCIVIGCCTAHYA-LPQIPENLKDKLISLIK----IADQELQEYNEPTLLLASTGTYQKKLFQEGCTTADLIISLSESDQKLIEMIYKVLKRGHDPLSILRDIEALLYNTRSYISGCTEFHLLTKSLKLKGIDSIKAIDPLSTIAQNFSQLIIKQAQVD............................ 240
19 -25.2003s7z_A mol:protein length:268 Putative aspartate racemase  ali model follow..  18  23..IGI----LGGMGMLEKFVELRHASC-LIVSSIPDIP--LSGGPSPYRYLERYLHMLEDAGAECIVIPCNTAHYW-FDDLQNVAKARMISILD----ATLGDIPPSARHVGLLATNATLATGLYQKKALARGLTLIQPED------IYTLKRGDKTAAQALLLPQIDSLRGAQAIIMGCTEIPLIVAGHERAIA--CPMIDSTASLVRAAIRWYESWPDTRAS.......................... 253
20 -24.5002zsk_A mol:protein length:226 226aa long hypothetical aspartate racemase  ali model follow..  18  4..IGI----IGGTTYYKKYIEISREKFIIYSINFKEFFQNPEGWEGRKKILINAAKALERAGAELIAFAANTPHLV-FDDVQREVNVPMVSIIDAVAEEILK---RGVRKVLLLGTKTTMTADFYIKTLEEKPNDEEKEELNRIIFEELAFGNLKNKEWIVRLIEKYRESEGIEGVILGCTELPLAIKQGDV----SVEVFDSAEIHMRKLIE..................................... 222
21 -24.4001jfl_A mol:protein length:228 ASPARTATE RACEMASE  ali model follow..  16  4..IGI----LGGMGLFRRIVIKTPAKR-VIIFNNPQIP--LGKGEDPRPQLIWTAKRLEECGADFIIMPCNTAHAF-VEDIRKAIKIPIISMIEETAKKVKE---LGFKKAGLLATTGTIVSGVYEKEFSKYPTEDEQKDVMRGIYEGVKAGNLKLGRELLLKTAKILEERGAECIIAGCTEVSVVLKQDDL----KVPLIDPMDVIAEVAVKVALEK................................ 228
22 -23.8005ell_A mol:protein length:238 Asp/Glu_racemase family protein  ali model follow..  14  4..IGL----LGGMSINEGIKQRLGGLHSQVLLHSVDFH--RGEWDKTGDILAEAALGLQRAGAEGIVLCTNTMHKV-ADAIESRCTLPFLHIADATGRAITG---AGMTRVALLGTRYTMEQDFYRGRLTEQFSINCLAKINQIIFEELCLGQFT-EASRAYYAQVIARLQGAQGVIFGCTEIGLLVPEERS----VLPVFDTAAIHAEDAVAFMLSLE............................... 232
23 -23.5003ojc_A mol:protein length:231 Putative aspartate/glutamate racemase  ali model follow..  13  5..LGL----IGGMSINQHVKAQLGGLHSKIILYSVDFH--KGDWQTAAQLLSNAAISLKHAGAEVIVVCTNTMHKV-ADDIEAACGLPLLHIADATAVQIKQ---QGIDKIGLLGTRYTMEQGFYRGRLTEKHGIEVIDTDREAVNRIIYEELCLGIISETSRDAYRRVIQGVQGIIFGCTEITLLVNAQDA----SVPVFDTTAIHASAAAD..................................... 227
24 -22.5005b19_A mol:protein length:232 Aspartate racemase  ali model follow..  18  5..VGI----IGGMGFIEKLTSMTDAEI-YVLYNDPEIP--FENMESPVNAINNGIKYLESIGIDTIGMACNTAHIWF----EFVYKSNFLNMIDLTASVLKK---SGFKNVLLLSTNATVSSGIYTGKLRDYN-INTVIPDQDIVMKSIHYVKVNDTKMARETIEPVINGNEVDALLLACTEMPVIISEKT-----NIPVIDSDEALAAALIKSAGKRLKKE............................ 226
25 -15.6002eq5_A mol:protein length:228 228aa long hypothetical hydantoin racemase  ali model follow..  11  7YTIGLILEDKEILNLHGRIIESAFPELKVVSRCIEDQPKGIYNEETEREAEPKIIRLAKEEGVDAIIISC--AADPAVEKVRKLLSIPVIGAGSSVSALALAY----GRRVGVLNLTEETPKVIRSILGNNLIAEDHPSGVSNTLDLLTDWGRREVINAAKRLKE-----KGVEVIALGCTGMSTIGIAPVLEEEVGIPVIDPVIASGAVALHALKRREVKRF........................... 225
26 -14.7005lfd_A mol:protein length:242 Allantoin racemase  ali model follow..  13  1MRILVVNVNTT--TIAEQARAVASPGTEIVGLTPYFGAESVEGNFESYLAAIAVMDRVMDQPFDAVIQAG---GEHGREGLQELLNVPVVDITEAAASTAMFL----GHAYSVV-TTLDRTVPLIEDRLKLAGLYQRCASVRASGMAVLELEEDPVAAMEAIVRQAELAIREAEVICLGCGGMAGLDEQIRQRTG--VPVVDGVTAAVTIAESLVRLGLSTSK........................... 221
27 -14.5003qvj_A mol:protein length:245 Putative hydantoin racemase  ali model follow..  14  2VRIQVINPNTS--TIGAAARAVAAPGTEILAVCPRAGVPSIEGHFDEAIAAVGVLEQIRAQGVDGHVIAC--FGDPGLLAARELAQGPVIGIAEAAMHMATMV----ATRFSIV-TTLPRTLIIARHLLHQYGFHQHCAALHAIDLPVLALEDGSGLAQEKVRERCIRALKESGAIVLGCGGMATLAQQLTRELR--VPVIDGVSAAVKMVESLVALGLATSK........................... 223
28 -12.6002dgd_A mol:protein length:223 223aa long hypothetical arylmalonate decarboxylase  ali model follow..  11  8..IGVI----NNAGMEYDLWKMAPEGVSIHSTRMKPTKGCEPENVEEFEKELKYSYSLLAEVSDIIIYGR-TYGTHKHAHVIKRVIKDVVIPEESVYELLKKLNV---RKLWIGTPYIKERTLEEVEWWRNKG-FEIVGYDGLGKIRGIDISNTPIFTIYRLVKRHLNEVLKADAVYIACTALSTYEQYLHEDLD--MPVVSENAAAMWEALNKLKIKAK.............................. 219
29 -11.9002vlb_A mol:protein length:251 ARYLMALONATE DECARBOXYLASE  ali model follow..  10  11..IGMI----AAGLVPADGARLYPDLPFI----ASGLGLGSVTPEGYDAVIESVARRLQKQGAAVVSLMGTSLSAALTVAMREATGLPCTTMSTAVLNGLRALGV---RRVALATAYIDDVNERLAAFLAEES-LVPTGCRSLGITGVEAMARVDTATLVDLCVRAFEAAPDSDGILLSCGGLLTLDPEVERRLG--VPVVSSSPAGFWDAVRLAGGGAKARPGYGRLFDE................... 241
30 -9.4604ix1_A mol:protein length:258 hypothetical protein  ali model follow..  11  14..VGLI----VIENAHVELARVAPEGVGVYQT-VPNFRVDATNIKRAVEQLETSAAALGSAGVDIVGQVGTPFSEDISTKLEKASGKPVALMGLSIVEALQERGY---KTVAISSTYYSRELSERYTQFLEAGGIRVLTIKNWVDQKRFPDEESVDGRNLWYPASYAYKSPEADCIIMSGAAVHTMDAPLEADLG--KPVISSDSAFFWKILSLLGVRET.............................. 247
31 -9.0301yix_A mol:protein length:265 deoxyribonuclease ycfH  ali model follow..  12  64..CGVHPLNQNDPYDVEDLRRLAAEEGVVALGETGLDYYYTPETKVRQQESFIHHIQIGRELNKPVIVHTRDARADTLAILREEKVTDCGGVLHTEDRETAGKLLDLGFYISFSGIVTFRNAEQLRDAARYVPLDRLVETDSPYLAPVPHRGKENQPAMVRDVAEYMAVLKGVA............................................................................ 238
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Grynberg M, Erlandsen H, Godzik A. HEPN: a common domain in bacterial drug resistance and human neurodegenerative proteins. Trends Biochem Sci. 2003 May;28(5):224-6. Review.