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Query: IDP00597 gene: murI; glutamate racemase YPO3909 [Yersinia pestis CO92], from CSGID

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MATKPQDANTTSREAITSKADSPPRPTALIFDSGVGGLSVYQEIRQLLPDLHYIYAFDNVAFPYGEKSGEFIVERVLEIVTAVQQRHPLAIVVIACNTASTVSLPALRERFAFPVVGVVPAIKPAVRLTRNGVVGLLATRATVHASYTLDLIARFATDCKIELLGSSELVEVAETKLHGGVVPLEVLKKILHPWLSMREPPDTIVLGCTHFPLLTEELAQVLPEGTRMVDSGAAIARRTAWLISSQENVISSQDENIAYCMALDEDTDALLPVLQSYGFPKLQKLPILast
1 -93.1002jfn_A mol:protein length:285 GLUTAMATE RACEMASE  ali model follow..  72  1MATKLQDGNTPC----LAATPSEPRPTVLVFDSGVGGLSVYDEIRHLLPDLHYIYAFDNVAFPYGEKSEAFIVERVVAIVTAVQERYPLALAVVACNTASTVSLPALREKFDFPVVGVVPAIKPAARLTANGIVGLLATRGTVKRSYTHELIARFANECQIEMLGSAEMVELAEAKLHGEDVSLDALKRILRPWLRMKEPPDTVVLGCTHFPLLQEELLQVLPEGTRLVDSGAAIARRTAWLLEHEAPDAKSADANIAFCMAMTPGAEQLLPVLQRYGFETLEKLAV 283
2 -84.8001zuw_A mol:protein length:272 glutamate racemase 1  ali model follow..  26  2.......................LEQPIGVIDSGVGGLTVAKEIMRQLPKENIIYVGDTKRCPYGPRPEEEVLQYTWELTNYLLENHHIKMLVIACNTATAIALDDIQRSVGIPVVGVIPGARAAIKVTDNQHIGVIGTENTIKSNAYEEALLALNPDLKVENLACPLLVPFVESGKFLDQTADEIVKTSLYPL--KDTSIDSLILGCTHYPILKEAIQRYMGEHVNIISSGDETAREVSTILSYKGLLNQS-PIAPDHQFLTTGARDQFAKIADDWFGHEVGHVE. 262
3 -83.3002oho_A mol:protein length:273 Glutamate Racemase  ali model follow..  24  3...............VPRGSHMMDTRPIGFLDSGVGGLTVVCELIRQLPHEKIVYIGDSARAPYGPRPKKQIKEYTWELVNFLLTQN-VKMIVFACNTATAVAWEEVKAALDIPVLGVVPGASAAIKSTTKGQVGVIGTPMTVASDIYRKKIQLLAPSIQVRSLACPKFVPIVESNEMCSSIAKKIVYDSLAPLV---GKIDTLVLGCTHYPLLRPIIQNVMGPSVKLIDSGAECVRDISVLLNYFDINGNYHQKAVEHRFFTTANPEIFQEIASIWLKQKINVEHV 271
4 -83.1002jfo_A mol:protein length:293 GLUTAMATE RACEMASE  ali model follow..  24  2........GSSSSGLVPRGSHMSNQEAIGLIDSGVGGLTVLKEALKQLPNERLIYLGDTARCPYGPRPAEQVVQFTWEMADFLLKKR-IKMLVIACNTATAVALEEIKAALPIPVVGVIPGARAAVKVTKNNKIGVIGTLGTIKSASYEIAIKSKAPAIEVTSLACPKFVPIVESNQYRSSVAKKIVAETLQAL--QLKGLDTLILGCTHYPLLRPVIQNVMGSHVTLIDSGAETVGEVSMLLDYFDIAHTPEAPTQPHEFYTTGSAKMFEEIASSWLGIENLKAQ. 277
5 -82.8002jfu_A mol:protein length:291 GLUTAMATE RACEMASE  ali model follow..  24  3........SSSSGTIEGRMIRLTDNRPIGFIDSGVGGLTVVKEALKQLPNENILFVGDTARCPYGPRPAEQVIQYTWEMTDYLVEQG-IKMLVIACNTATAVALEEIKAALSIPVIGVIPGTRAAVKKTQNKQVGIIGTIGTVKSQAYEKALKEKVPELTVTSLACPKFVSVVESNEYHSSVAKKIVAETLAPL--TTKKIDTLILGCTHYPLLRPIIQNVMGENVQLIDSGAETVGEVSMLLDYFNLSNSPQNGRTLCQFYTTGSAKLFEEIAEDWLGIGHLNVE. 278
6 -82.8002gzm_A mol:protein length:267 Glutamate racemase  ali model follow..  25  1......................KLNRAIGVIDSGVGGLTVAKELIRQLPKERIIYLGDTARCPYGPRSREEVRQFTWEMTEHLLDLN-IKMLVIACNTATAVVLEEMQKQLPIPVVGVIPGSRTALKVTNTYHVGIIGTIGTVKSGAYEEALKSINNRVMVESLACPPFVELVESGNFESEMAYEVVRETLQPL--KNTDIDTLILGCTHYPILGPVIKQVMGDKVQLISSGDETAREVSTILYHSKMLNEG-EEQSDHLFLTTGKIGLFKEIASKWFGQPIENVK. 261
7 -82.3005hj7_A mol:protein length:273 Glutamate racemase  ali model follow..  30  1..................SHMNSPLAPVGVFDSGVGGLTVARAIIDQLPDEDIVYVGDTGNGPYGPLTIPEIRAHALAIGDDLVGRG-VKALVIACNSASSACLRDARERYQVPVVEVIPAVRRAVAATRNGRIGVIGTRATITSHAYQDAFAAA-RDTEITAVACPRFVDFVERGVTSGRQVLGLAQGYLEPL--QRAEVDTLVLGCTHYPLLSGLIQLAMGENVTLVSSAEETAKEVVRVLTEIDLLRPHDAPPATRIFEATGDPEAFTKLAARFLGPVLGGVQ. 265
8 -82.2003hfr_A mol:protein length:269 Glutamate racemase  ali model follow..  26  1....................SNAMKQAIGFIDSGVGGLTVVREVLKQLPHEQVYYLGDTARCPYGPRDKEEVAKFTWEMTNFLVDRG-IKMLVIACNTATAAALYDIREKLDIPVIGVIPGSRAALKATRNNKIGVLGTLGTVESMAYPTALKGLNRRVEVDSLACPKFVSVVESGEYKSAIAKKVVAESLLPL--KSTKIDTVILGCTHYPLLKPIIENFMGDGVAVINSGEETASEVSALLDYHNLLDAT-DEEIEHRFFTTGSTQIFKDIAKDWLNMPDMTVE. 263
9 -82.0002dwu_A mol:protein length:276 Glutamate racemase  ali model follow..  26  2...................SVCHKHSVIGVLDSGVGGLTVASEIIRQLPKESICYIGDNERCPYGPRSVEEVQSFVFEMVEFLKQFP-LKALVVACNTAAAATLAALQEALSIPVIGVIPGARAAIKVTKKGKIGVIGTVGTIQSNMYEKALHELDTYLKVHSHACPTLATVVENRLEDTAYVTQQVKQALLPLTKE--DIDTLILGCTHYPLLESYIKKELGEDVTIISSAEETAIELSTILQHKGILADN--LNPKHRFFTTGSVSSFEHIAERWLGYQISVDCV 265
10 -80.1002jfq_A mol:protein length:286 GLUTAMATE RACEMASE  ali model follow..  26  5.............SSGLVPRGSHMNKPIGVIDSGVGGLTVAKEIMRQLPNETIYYLGDIGRCPYGPRPGEQVKQYTVEIARKLMEFD-IKMLVIACNTATAVALEYLQKTLSISVIGVIPGARTAIMTTRNQNVLVLGTEGTIKSEAYRTHIKRINPHVEVHGVACPGFVPLVEQMRYSDPITSIVIHQTLKRW--RNSESDTVILGCTHYPLLYKPIYDYFGGKKTVISSGLETAREVSALLTFSNEHASY-TEHPDHRFFATGDTTHITNIIKEWLNLSVNVERI 276
11 -80.1003uhf_A mol:protein length:274 Glutamate racemase  ali model follow..  24  2........SSGVDLGTENLYFQSNAMKIGVFDSGVGGLSVLKSLYEARLFDEIIYYGDTARVPYGVKDKDTIIKFCLEALDFFEQFQ-IDMLIIACNTASAYALDALRAKAHFPVYGVIAGVEATIKADKNKEILVIATKATIKSEEYQKRLLSQ-GYTNINALATGLFVPMVEEGIFEGDFLQSAMEYYFKNI----TTPDALILACTHFPLLGRSLSKYFGDKTKLIHSGDAIVEFLKERENIDL-----KNHKAKLHFYASSDVESLKNTAKIWLN........ 264
12 -79.7001b73_A mol:protein length:254 GLUTAMATE RACEMASE  ali model follow..  27  2..........................KIGIFDSGVGGLTVLKAIRNRYRKVDIVYLGDTARVPYGIRSKDTIIRYSLECAGFLKDKG-VDIIVVACNTASAYALERLKKEINVPVFGVIPGVKEALKKSRNKKIGVIGTPATVKSGAYQRKLEEG--GADVFAKACPLFAPLAEEGLLEGEITRKVVEHYLKEF---KGKIDTLILGCTHYPLLKKEIKKFLG-DAEVVDSSEALSLSLHNFIKDDG--------SSSLELFFTDLSPNLQFLIKLILGRDYPVKLA 248
13 -79.0005ijw_A mol:protein length:279 Glutamate racemase  ali model follow..  29  1..................SHMSDRLAPIGIFDSGVGGLTVARAIIDQLPDEDIVYVGDTGNGPYGPLTIPQIRAHSLAIGDDLVSRG-VKALVIACNTASSACLRDARERYPVPVVEVIPAVRRAVAATRNGRIGVIGTQATIASGAYQDAFAAA-RDTEVFTVACPRFVDFVERGVTSGRQVLGLAEGYLEPL--QLAEVDTLVLGCTHYPMLSGLIQLAMGDNVTLVSSAEETAKDLLRVLTELDLLRPHPSVTAVRRFEATGDPEAFTALAARFLGPTLDGVR. 269
14 -78.4002jfx_A mol:protein length:255 GLUTAMATE RACEMASE  ali model follow..  23  2..........................KIGVFDSGVGGFSVLKSLLKARLFDEIIYYGDSARVPYGTKDPTTIKQFGLEALDFFKPHE-IELLIVACNTASALALEEMQKYSKIPIVGVIEPSILAIKRDKNAPILVLGTKATIQSNAYDNALKQQ-GYLNISHLATSLFVPLIEESILEGELLETCMHYYFTPL---EILPEVIILGCTHFPLIAQKIEGYFMGHFALIHSGDAIVEYLQQKYALKNNACTF----PKVEFHASGDVIWLERQAKEWLK........ 254
15 -78.2003out_A mol:protein length:268 Glutamate racemase  ali model follow..  22  1..................SNAMLDNRPIGVFDSGIGGLTIVKNLMSILPNEDIIYFGDIARIPYGTKSRATIQKFAAQTAKFLIDQE-VKAIIIACNTISAIAKDIVQEIAAIPVIDVITAGVSLV--DNLNTVGVIATPATINSNAYALQIHKKNPNIEVYSNPCGLFVSMIEEGFVSGHIVELVAKEYLSYF--HDKNIQALILGCTHYPIIKESIAKILD--VKLIDPSLQASKMLYSLLFENKLLNTT-KSNPEYRFYVTDIPLKFRSVGEMFLQTEMQHLE. 261
16 -78.0005w1q_A mol:protein length:275 Glutamate racemase  ali model follow..  20  2............GSSSSGLVPRGSHMKIGVFDSGVGGFSVLKSLLKAQIFDKIIYYGDSARVPYGTKDPTTIKQFGLEALDFFKPHK-IELLIVACNTASALALEEMQKHSKIPIVGVIEPSILAIVKDKNAPILVLGTKATIQSNAYDNALKQQ-GYLNVSHLATSLFVPLIEENILEGELLETCMRYYFTPL---EILPEVVILGCTHFPLIAQKIEGYFMEHFALSTPPLLIGDAIVEYLQQKYTLKKNACTFPKVEFHASGDVVWLEKQAKEWLK........ 268
17 -77.1005w16_A mol:protein length:278 Glutamate racemase  ali model follow..  29  13.................SHMVKDPKAPIGVFDSGVGGLTVLKALRRLLPREEFLYFGDTARVPYGGKPLAMVRRFAWEIAGFLLRQG-VKAIVVACNTASSAALPDLAEDLSVPVFGVVPAARAA---RGFRKVGLIGTQATVESGAYPRYVDL------AWAKACPLFVPLVEEGLWDDPVALLVARHYLEDA---PKDLEALILGCTHYPFLKGAIGAVLP-GVALLDSAELTAQEVARALEAEGLLNPE--GRGRTFHLVTGDPEAYRALAERLGERVEAVRRV 267
18 -27.7005wxx_A mol:protein length:260 McyF  ali model follow..  17  2..................GMMKTKLPILGVL-GGMGPVVTA-EFLKSIYEYNPFIDKEQESPNVIVFSFPSAPDRTGSIDS--HLNKLADCIVIGCCTAHYA-LPQIPENLKDKLISLIKIADQELQ-EYNEPTLLLASTGTYQKKLFQEGCTTADLIISLSESDQKLIHEMIYKVLKRGHDPLSILRDIEALL--EKYNTRSYISGCTEFHLLTKSLKLKGIDSIKAIDPLSTIAQNFSQLIIKQ......................................... 236
19 -24.5003s7z_A mol:protein length:268 Putative aspartate racemase  ali model follow..  17  2......SSGVDLGTENLYFQSNAMKHTIGI----LGGMGMLEKFVELRHASC-----DQQHIPLIVSSIPDIPDRTACLLS--LEDAGAECIVIPCNTAHYW-FDDLQNVAKARMISILDATLGDIP-PSARHVGLLATNATLATGLYQKKALARGLTLIQPEDAGQALVMIYTLKRGDKTAAQALLLPQIDSLIAR--GAQAIIMGCTEIPLIVAGHERAIA--CPMIDSTASLVRAAIRWYESWPDTRASLTGEQR............................. 259
20 -24.1001jfl_A mol:protein length:228 ASPARTATE RACEMASE  ali model follow..  14  2.........................KTIGI----LGGMGLFRRIVIKTPAKR-VIIFNNPQIP-GEDPRPQLIWTAKRL-----EECGADFIIMPCNTAHAF-VEDIRKAIKIPIISMIEETAKKVKELGFKKAGLLATTGTIVSGVYEKEFSKYGVEIMTPTEDEQKDVMRGIYEGVKAGNLKLGRELLLKTAKIEERGAECIIAGCTEVSVVLKQDDL----KVPLIDPMDVIAEVAVKVALEK......................................... 228
21 -24.0002zsk_A mol:protein length:226 226aa long hypothetical aspartate racemase  ali model follow..  17  2.........................KKIGI----IGGTTYIEISREKFEKYFYELIIYSINFKEFFQNPEGWEGRKKILINAALERAGAELIAFAANTPHLV-FDDVQREVNVPMVSIIDAVAEEILKRGVRKVLLLGTKTTMTADFYIKTLEEKGLEVVVPNDEEKEELRIIFEELAFGNLKNKEWIVRLIEKYRESEGIEGVILGCTELPLAIKQGDV----SVEVFDSAEIHMRKLIELASE.......................................... 226
22 -23.0005ell_A mol:protein length:238 Asp/Glu_racemase family protein  ali model follow..  18  2.........................KTIGL----LGGMSINEGIKQRLGGLHSQVLLHSVDFH--RGEWDKTGDILAEAALGL-QRAGAEGIVLCTNTMHKV-ADAIESRCTLPFLHIADATGRAITGAGMTRVALLGTRYTMEQDFYRGRINCLIPEADERAKINQIIFEELCLGQFTEA-SRAYYAQVIARL--AEQGAQGVIFGCTEIGLLVPEERS----VLPVFDTAAIHAEDAVAFMLSLE........................................ 232
23 -22.8005b19_A mol:protein length:232 Aspartate racemase  ali model follow..  13  2........................GKIVGI----IGGMGFIEKLTSMTDAEI-----DQDHVRYVLYNDPEIPDRIEAYFE--LESIGIDTIGMACNTAHIWF----EFVYKSNFLNMIDLTASVLKKSGFKNVLLLSTNATVSSGIYTGKLRDY--NINTVIPDQDIVMKSIHYVKVNDTKMARETIEPVINGHRN--EVDALLLACTEMPVIISEKTY----NIPVIDSDEALAAALIKSAGKR......................................... 222
24 -22.7003ojc_A mol:protein length:231 Putative aspartate/glutamate racemase  ali model follow..  15  2........................MKILGL----IGGMSINQHVKAQLGGLHSKIILYSVDFH--KGDWQTAAQLLSNAAISL-KHAGAEVIVVCTNTMHKV-ADDIEAACGLPLLHIADATAVQIKQQGIDKIGLLGTRYTMEQGFYGRLTEKHGIEVITPDDTDREAVNRIIYEELCLGIISETSRDAYRRVIKKAQGVQGIIFGCTEITLLVNAQDA----SVPVFDTTAIHASAAADYALQ.......................................... 231
25 -16.1002eq5_A mol:protein length:228 228aa long hypothetical hydantoin racemase  ali model follow..  15  24......................................NLHGRIIESAFPELKVVSRCIEDQPKGIYNEETEREAEPKIIRLAFEREGVDAIIISC--AADPAVEKVRKLLSIPVIGAGSSVSALA-LAYGRRVGVLNLTEETP-KVIRSILGNNLIAEDHPSGVSNTLDLLTDWGRREVINAAKRLKE---------KGVEVIALGCTGMSTIGIAPVLEEEVGIPVIDPVIASGAVALHALK........................................... 218
26 -14.2003qvj_A mol:protein length:245 Putative hydantoin racemase  ali model follow..  16  18......................................TIGAAARAVAAPGTEILAVCPRAGVPSIEGHFDEAIAAVGVLEQIRAEQGVDGHVIAC---GDPGLLAARELAQGPVIGIAEAAMHMA-TMVATRFSIV-TTLPRTLIIARHLLHQYGFHQHCAALHAID-LPVLALEDGSGLAQEKVRERCIRAL--KEDGSGAIVLGCGGMATLAQQLTRELR--VPVIDGVSAAVKMVESLVA........................................... 216
27 -14.2005lfd_A mol:protein length:242 Allantoin racemase  ali model follow..  13  17......................................TIAEQARAVASPGTEIVGLTPYFGAESVEGNFESYLAAIAVMDRVMAYDQFDAVIQAG---GEHGREGLQELLNVPVVDITEAAASTA-MFLGHAYSVV-TTLDRTVPLIEDRLKLAGLYQRCASVRASG-MAVLELEEDPVAAMEAIVRQAELAI--REDKAEVICLGCGGMAGLDEQIRQRTG--VPVVDGVTAAVTIAESLVR........................................... 214
28 -12.5002dgd_A mol:protein length:223 223aa long hypothetical arylmalonate decarboxylase  ali model follow..  12  1....................MPGGRGRIGVI----NNAGMEYDLWKMAPEGVSIHSTRMKPTKGCEPENVEEFEKELKYSYSLLAE-VSDIIIYGR-TYGTHKHAHVIKRVIKDVVIPEESVYELLKKLNVRKLWIG----TPYIKERTLEEVEWWRNKGFEIVGYDGL---KIRGIDISNTPIFTIYRLVKRHLNEVLKADAVYIACTALSTYEQYLHEDLDMPV--VSENAAAMWEALNKL............................................ 214
29 -12.3002vlb_A mol:protein length:251 ARYLMALONATE DECARBOXYLASE  ali model follow..  18  8........................TPTIGMI----AAGLVPADGARLYPDLPFIA----SGLGLGSVTPEGYDAVIESVVDHALQKQGAAVVSLMGTSLSFYLTVAMREATGLPCTTMSTAVLNGLRALGVRRVALA----TAYIDDVNERLAAFLAEESLVPTGCRSL---ITGVEAMARVDTATLVDLCVRAFEAAPDSDGILLSCGGLLTLDPEVERRLGVPV--VSSSPAGFWDAVRLA............................................ 225
30 -10.1004ix1_A mol:protein length:258 hypothetical protein  ali model follow..  13  11........................RGKVGLI----VIENAHVELARVAPEGVGVYQT-FPYVPNFRVDATNIKRAVEQLETSALGSAGVDIVGQVGTPFSFAGSTKLEKASGKPVALMGLSIVEALQERGYKTVAISST---YYSRELSERYTQFAGGIRVLTIKNWVDQKRFPDEESVDGYPASYAYKSAREVAAEAPEADCIIMSGAAVHTMDAPLEADLGKPV--ISSDSAFFWKILSLL............................................ 242
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;