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Query: IDP02135 putative aspartate racemase [Salmonella typhimurium LT2] STM4510 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2], from CSGID

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKHTIGILGGMGPAATADMLEKFVELRHASCDQQHIPLIVSSIPDIPDRTACLLSGGPSPYRYLERYLHMLEDAGAECIVIPCNTAHYWFDDLQNVAKARMISILDATLGDIPPSARHVGLLATNATLATGLYQKKALARGLTLIQPEDAGQALVMQAIYTLKRGDKTAAQALLLPQIDSLIARGAQAIIMGCTEIPLIVAGHERAIACPMIDSTASLVRAAIRWYESWPDTRASLTGEQRLTALast
1 -96.2003s7z_A mol:protein length:268 Putative aspartate racemase  ali model follow..  100  19MKHTIGILGGMGPAATADMLEKFVELRHASCDQQHIPLIVSSIPDIPDRTACLLSGGPSPYRYLERYLHMLEDAGAECIVIPCNTAHYWFDDLQNVAKARMISILDATLGDIPPSARHVGLLATNATLATGLYQKKALARGLTLIQPEDAGQALVMQAIYTLKRGDKTAAQALLLPQIDSLIARGAQAIIMGCTEIPLIVAGHERAIACPMIDSTASLVRAAIRWYESWPDTRASLTGEQRLTA 262
2 -88.1001jfl_A mol:protein length:228 ASPARTATE RACEMASE  ali model follow..  35  2..KTIGILGGMGPLATAELFRRIVIKTPAKRDQEHPKVIIFNNPQIPDRTAYILGKGEDPRPQLIWTAKRLEECGADFIIMPCNTAHAFVEDIRKAIKIPIISMIEETAKKVKELGKKAGLLATTGTIVSGVYEKEFSKYGVEIMTPTEDEQKDVMRGIYEGVKGNLKLGRELLLKTAKILEERGAECIIAGCTEVSVVLKQDD--LKVPLIDPMDVIAEVAVKVALEK............... 228
3 -83.9005b19_A mol:protein length:232 Aspartate racemase  ali model follow..  27  1MGKIVGIIGGMGPVATVKFIEKLTSMTDAEIDQDHVRYVLYNDPEIPDRIEAYFENMESPVNAINNGIKYLESIGIDTIGMACNTAHIWFKEFVY--KSNFLNMIDLTASVLKKSGKNVLLLSTNATVSSGIYTGKLRDYNINTVIPDQDIVMKSIHYVK----VNDTKMARETIEPVINGHRNEVDALLLACTEMPVIISEKT--YNIPVIDSDEALAAALIKSAGKRLKKEYRLYD...... 231
4 -83.0002zsk_A mol:protein length:226 226aa long hypothetical aspartate racemase  ali model follow..  25  2..KKIGIIGGTTPESTLYYYKKYIEISREKFEKYFYPELIIYSINFKEFFQNP-EGWEGRKKILINAAKALERAGAELIAFAANTPHLVFDDVQREVNVPMVSIIDAVAEEILKRGRKVLLLGTKTTMTADFYIKTLEEKGLEVVVPNDEEKEELNRIIFEELAFGNKNKEWIVRLIEKYRESEGIEGVILGCTELPLAIKQGD--VSVEVFDSAEIHMRKLIELASE................ 226
5 -82.1005wxx_A mol:protein length:260 McyF  ali model follow..  23  8.LPILGVLGGMGPVVTAEFLKSIYEYNPIDKEQESPNVIVFSFPSAPDRTGSIDSGKEREFIDFIQVNLEHLNKLADCIVIGCCTAHYALPQIPENLKDKLISLIKIADQELQEYNEPTLLLASTGTYQKKLFQEGCTTADLIIS-LSESDQKLIHEMIYKVLKRG-HDPLSILRDIEALLEKYNTRSYISGCTEFHLLTKSLKLKDSIKAIDPLSTIAQNFSQLIIKQAQVDLVTDCHQPSNP 251
6 -82.0003ojc_A mol:protein length:231 Putative aspartate/glutamate racemase  ali model follow..  27  1MMKILGLIGGMSWESTIPYYRMINQHVKAQLGGLHSAKIILYSVDFHEIEQLQAGDWQTAAQLLSNAAISLKHAGAEVIVVCTNTMHKVADDIEAACGLPLLHIADATAVQIKQQGDKIGLLGTRYTMEQGFYRGRLEKHGIEVITPDDTDREAVNRIIYEELCLGSETSRDAYRRVIKKLEAQGVQGIIFGCTEITLLVNAQD--ASVPVFDTTAIHASAAADYALQ................ 231
7 -80.3005ell_A mol:protein length:238 Asp/Glu_racemase family protein  ali model follow..  26  2..KTIGLLGGMSWESTIPYYRLINEGIKQRLGGLHSAQVLLHSVDFHEIEECQRGEWDKTGDILAEAALGLQRAGAEGIVLCTNTMHKVADAIESRCTLPFLHIADATGRAITGAGTRVALLGTRYTMEQDFYRGRLEQFSINCLIPEADERAKINQIIFEELCLGTEASRAYYAQVIARLAEQGAQGVIFGCTEIGLLVPEER--SVLPVFDTAAIHAEDAVAFMLSLE.............. 232
8 -26.7002gzm_A mol:protein length:267 Glutamate racemase  ali model follow..  14  2LNRAIGVVGGLT------VAKELIRQLPKER------IYLGDTARCP------PRSREEVRQFTWEMTEHLLDLNIKMLVIACNTATAVLEEMQKQLPIPVVGVIHPGSRTAVTNTYHVGIIGTIGTVKSGAYEEALKSINNRVMVESLACPPFVE--LVESGNFESEMAYEVVRETLQPLKNTDIDTLILGCTHYPILGPVIKQVMGVQLISSGDETAREVSTILYHSK.............. 223
9 -26.6002jfq_A mol:protein length:286 GLUTAMATE RACEMASE  ali model follow..  16  15MNKPIGVVGGLT------VAKEIMRQLPNET------YYLGDIGRCP------PRPGEQVKQYTVEIARKLMEFDIKMLVIACNTATAVLEYLQKTLSISVIGVIEPGARTATTRNQNVLVLGTEGTIKSEAYRTHIKRINPHVEVHGVACPGFV-PLVEQMRYSDPTITSIVIHQTLKRWRNSESDTVILGCTHYPLLYKPIYDYFGKTVISSGLETAREVSALLTFSN.............. 237
10 -26.5003out_A mol:protein length:268 Glutamate racemase  ali model follow..  17  7.NRPIGVIGGLT------IVKNLMSILPNED------IYFGDIARIP------TKSRATIQKFAAQTAKFLIDQEVKAIIIACNTISAIKDIVQEIAAIPVIDVITAGVSLVDNL-NTVGVIATPATINSNAYALQIHKKNPNIEVYSNPCGLFVS--MIEEGFVSGHIVELVAKEYLSYFHDKNIQALILGCTHYPIIKESIAKILDVKLIDPSLQASKMLYSLLFENK.............. 223
11 -26.3002dwu_A mol:protein length:276 Glutamate racemase  ali model follow..  14  7.HSVIGVVGGLT------VASEIIRQLPKES------CYIGDNERCP------PRSVEEVQSFVFEMVEFLKQFPLKALVVACNTAAAALAALQEALSIPVIGVIHPGARAAVTKKGKIGVIGTVGTIQSNMYEKALHELDTYLKVHSHACPTLAT--VVENRLEDTAYVTQQVKQALLPLTKEDIDTLILGCTHYPLLESYIKKELGVTIISSAEETAIELSTILQHKGILADNLNPKHR... 238
12 -26.2003hfr_A mol:protein length:269 Glutamate racemase  ali model follow..  16  4MKQAIGFVGGLT------VVREVLKQLPHEQ------YYLGDTARCP------PRDKEEVAKFTWEMTNFLVDRGIKMLVIACNTATAALYDIREKLDIPVIGVIQPGSRAAATRNNKIGVLGTLGTVESMAYPTALKGLNRRVEVDSLACPKFVS--VVESGEYKSAIAKKVVAESLLPLKSTKIDTVILGCTHYPLLKPIIENFMGVAVINSGEETASEVSALLDYHN.............. 225
13 -25.9002jfo_A mol:protein length:293 GLUTAMATE RACEMASE  ali model follow..  15  18.QEAIGLVGGLT------VLKEALKQLPNER------IYLGDTARCP------PRPAEQVVQFTWEMADFLLKKRIKMLVIACNTATAVLEEIKAALPIPVVGVILPGARAAVTKNNKIGVIGTLGTIKSASYEIAIKSKAPAIEVTSLACPKFVP--IVESNQYRSSVAKKIVAETLQALQLKGLDTLILGCTHYPLLRPVIQNVMGVTLIDSGAETVGEVSMLLDYFD.............. 238
14 -25.9002jfu_A mol:protein length:291 GLUTAMATE RACEMASE  ali model follow..  17  19.NRPIGFVGGLT------VVKEALKQLPNEN------LFVGDTARCP------PRPAEQVIQYTWEMTDYLVEQGIKMLVIACNTATAVLEEIKAALSIPVIGVILPGTRAAKTQNKQVGIIGTIGTVKSQAYEKALKEKVPELTVTSLACPKFVS--VVESNEYHSSVAKKIVAETLAPLTTKKIDTLILGCTHYPLLRPIIQNVMGVQLIDSGAETVGEVSMLLDYFNLSNSPQNGRTL... 250
15 -25.7001zuw_A mol:protein length:272 glutamate racemase 1  ali model follow..  19  3.EQPIGVISGVGGLTVAKEIMRQLPKENIIYVGDTKRC-----PYGPRPEEEVLQYTWELTNYL------LENHHIKMLVIACNTATAILDDIQRSVGIPVVGVIQPGARAAVTDNQHIGVIGTENTIKSNAYEEALLALNPDLKVENLACPLLVP--FVESGKFLDQTADEIVKTSLYPLKDTSIDSLILGCTHYPILKEAIQRYMGVNIISSGDETAREVSTILSYKG.............. 224
16 -24.8002jfn_A mol:protein length:285 GLUTAMATE RACEMASE  ali model follow..  15  21.RPTVLVFSGVGGLSVYDEIRHLLPDLHYIYAFDNVAF-----PYGEKSEAFIVERVVAIVTAV------QERYPLALAVVACNTASTVLPALREKFDFPVVGVVPAIKPAARTANGIVGLLATRGTVKRSYTHELIARFANECQIEMLGSAEMVE--LAEAKLHGEDVSLDALKRILRPWLKEPPDTVVLGCTHFPLLQEELLQVLPTRLVDSGAAIARRTAWLLEHEAPDAKSADANIA... 254
17 -24.8003uhf_A mol:protein length:274 Glutamate racemase  ali model follow..  18  18.AMKIGVVGGLS------VLKSLYEARLFDE------IYYGDTARVP------VKDKDTIIKFCLEALDFFEQFQIDMLIIACNTASAYLDALRAKAHFPVYGVIDATIKALHDKNKEILVIATKATIKSEEYQKRLLSQGYTNINALA---------MVEEGIFEGDFLQSAMEYYFKNI--TTPDALILACTHFPLLGRSLSKYFGTKLIHSGDAIVEFLKERENIDLKNHKA......... 242
18 -24.8001b73_A mol:protein length:254 GLUTAMATE RACEMASE  ali model follow..  17  3....IGIVGGL------TVLKAIRNRYRKVD------VYLGDTARVP------IRSKDTIIRYSLECAGFLKDKGVDIIVVACNTASAYLERLKKEINVPVFGVIEPGVKEAKSRNKKIGVIGTPATVKSGAYQRKLEEGGADVF---AKACPLFAPLA--EEGLLEGEITRKVVEHYLKEFKGKIDTLILGCTHYPLLKKEIKKFLGAEVVDSSEALSLSLHNFIKDDGS............. 217
19 -24.5005hj7_A mol:protein length:273 Glutamate racemase  ali model follow..  15  7.LAPVGVVGGLT------VARAIIDQLPDED------VYVGDTGNGP------PLTIPEIRAHALAIGDDLVGRGVKALVIACNSASSALRDARERYQVPVVEVILPAVRRAATRNGRIGVIGTRATITSHAYQDAFAAARDTEITAVA---------FVERGVTSGRQVLGLAQGYLEPLQRAEVDTLVLGCTHYPLLSGLIQLAMGVTLVSSAEETAKEVVRVLTEID.............. 226
20 -24.2002oho_A mol:protein length:273 Glutamate Racemase  ali model follow..  16  12.TRPIGFVGGLT------VVCELIRQLPHEK------VYIGDSARAP------PRPKKQIKEYTWELVNFLLTQNVKMIVFACNTATAVWEEVKAALDIPVLGVVLPGASAASTTKGQVGVIGTPMTVASDIYRKKIQLLAPSIQVRSLACPKFVP--IVESNEMCSSIAKKIVYDSLAPLVG-KIDTLVLGCTHYPLLRPIIQNVMGVKLIDSGAECVRDISVLLNYFD.............. 231
21 -23.9002jfx_A mol:protein length:255 GLUTAMATE RACEMASE  ali model follow..  16  3....IGVVGGFS------VLKSLLKARLFDE------IYYGDSARVP------TKDPTTIKQFGLEALDFFKPHEIELLIVACNTASALLEEMQKYSKIPIVGVIEPSILAIKRKNAPILVLGTKATIQSNAYDNALKQQGYLNISHLA---------LIEESILEGELLETCMHYYFTPL-EILPEVIILGCTHFPLIAQKIEGYFMPLLIHSGDAIVEYLQQ.................... 220
22 -23.8005w16_A mol:protein length:278 Glutamate racemase  ali model follow..  18  20.KAPIGVVGGLT------VLKALRRLLPREE------LYFGDTARVP------GKPLAMVRRFAWEIAGFLLRQGVKAIVVACNTASSALPDLAEDLSVPVFGVVEPAARAARGF-RKVGLIGTQATVESGAYPRYVDLA-VPLVEEGLWDDPVALLVARHYLED----------------APKDLEALILGCTHYPFLKGAIGAVLGVALLDSAELTAQEVARALEAEGLLNPEGRGRTF... 240
23 -23.6005w1q_A mol:protein length:275 Glutamate racemase  ali model follow..  14  14.HMKIGVVGGFS------VLKSLLKAQIFDK------IYYGDSARVP------TKDPTTIKQFGLEALDFFKPHKIELLIVACNTASALLEEMQKHSKIPIVGVIEPSILAIKQKNAPILVLGTKATIQSNAYDNALKQQGYLNVSHLA---------LIEENILEGELLETCMRYYFTPL-EILPEVVILGCTHFPLIAQKIEGYFMPLLIHSGDAIVEYLQQ.................... 234
24 -23.4002eq5_A mol:protein length:228 228aa long hypothetical hydantoin racemase  ali model follow..  15  6.KYTIGLI---RVITLEDKEILNLHGRIIESAFPELKVVSRCIEDQPKGIYN-EETEREAEPKIIRLAKEFEREGVDAIIISC-AADPAVEKVRKLLSIPVIGAGSSVSALALAYGRRVGVL-NLTEETPKVIRSILGNNLIA---------EDHPSGVSNTLDLLTDWGRREVINAAKRLKEKGVEVIALGCTGMSTIAPVLEEEVGIPVIDPVIASGAVALHAL.................. 217
25 -22.9005ijw_A mol:protein length:279 Glutamate racemase  ali model follow..  16  7.LAPIGIVGGLT------VARAIIDQLPDED------VYVGDTGNGP------PLTIPQIRAHSLAIGDDLVSRGVKALVIACNTASSALRDARERYPVPVVEVILPAVRRAATRNGRIGVIGTQATIASGAYQDAFAAARDTEVFTVA---------FVERGVTSGRQVLGLAEGYLEPLQLAEVDTLVLGCTHYPMLSGLIQLAMGVTLVSSAEETAKDLLRVLTEL............... 226
26 -20.3003qvj_A mol:protein length:245 Putative hydantoin racemase  ali model follow..  13  1...SVRIQ--INPNTSLAMTETIGAAARAVAAPG-TEILAVCPRAGVPSIEGHFDEAIA-AVGVLEQIRAGREQGVDGHVIACFGDP--LLAARELAQGPVIGIAEAAMHMATMVATRFSIV-TTLPRTLIIARHLLHQYGFHQHCAA----HAIDLPVLALEDGSGLAQEKVRERCIRALKEDGSGAIVLGCGGMATLAQQLTRELRVPVIDGVSAMVESLVALGLATSKHGDLAFPEKK... 233
27 -18.9005lfd_A mol:protein length:242 Allantoin racemase  ali model follow..  13  1MRILV-----VNVNTTASITETIAEQARAVASPG-TEIVGLTPYFGAESVEGNFESYLAAIAVM--DRVMAYDQPFDAVIQAGYGEH--REGLQELLNVPVVDITEAAASTAMFLGHAYSVV-TTLDRTVPLIEDRLKLAGLYQRCAS----RASGMAVLELEEDPVAAMEAIVRQAELAIREDKAEVICLGCGGMAGLDEQIRQRTGVPVVDGVTAIAESLVRLGLSTSKI............ 222
28 -17.6002dgd_A mol:protein length:223 223aa long hypothetical arylmalonate decarboxylase  ali model follow..  9  5.RGRIGVI----PANNAGMEYDLWKMAPEGVSIHSTRMKPTKGC---------EPENVEEFEKELKYSYSLLAEVSDIIIYGRTYGTHKHAHVIKRVIKDVVIPEESVYELLKKNVRKLWIGTPYIKERTLEEVEWWRNKGFEIV--------GYDGLGKIRGIDISNTPIFTIYRLVKRHLNEKADAVYIACTALSTAVQYLHEDLDMPVVSENAAAMWEALNKL.................. 214
29 -16.6004ix1_A mol:protein length:258 hypothetical protein  ali model follow..  10  11.RGKVGLI----TPVIENAHVELARVAPEGVGVYQTFPYVPNFRVDATNIKRAVEQ-------LETSAAALGSAGVDIVGQVGTPFSFASTKLEKASGKPVALMGLSIVEALQEGYKTVAISSTYYSRESERYTQFLEAGGIRVLTIKNWVDQKRFPDEESVDGRNLWYPASYAYKSAREVAAEEADCIIMSGAAVHTMIAPLEADLGKPVISSDSAFFWKILSLL.................. 242
30 -15.4002vlb_A mol:protein length:251 ARYLMALONATE DECARBOXYLASE  ali model follow..  11  8.TPTIGMIVPPAAGLVPADGARLYPDLPFIASGLGL-------------GSVTPEGYDAVIESVVDHARRLQKQGAAVVSLMGTSLSFYTVAMREATGLPCTTMSTAVLNGLRAGVRRVALATAYIDDVNERLAAFLAEESLVPT--------GCRSLGITGVEAMARVDTATLVDLCVRAFEADSDGILLSCGGLLTLIPEVERRLGVPVVSSSPAGFWDAVRLA.................. 225
31 -14.0004fq5_B mol:protein length:281 Maleate cis-trans isomerase  ali model follow..  14  21.VVRVGQI----PSSNITMETEIPALLKARELVAPERFTFHSSRM--RMKHVTKEELARMDGDSDRCALELSDARVDVMGYACLVAIMSAERLRNVTATPIITSAGALIDGIRAGAKRVAVVTPYMKPLTELVVDYIRHEGIEVG--------DYRALEISDNLAVAAHDPMNLPGIIASMRTDDVDAIVIAAVQMPSLITMVEAQTRKPVISAAVATTWAMLTAL.................. 250
32 -13.5002xec_A mol:protein length:273 PUTATIVE MALEATE ISOMERASE  ali model follow..  14  19.IRRIGLV-SSNVTVETEMPALLSRHPGAEFSFHSTRMRMHTVS---------PEGLAAMNAQRERCVLEIADAAPEVILYACLVAHRVESAVAEQLQALVRSSAGALVEGLRADAQRVALVTPYMRPLAEKVVAYLEAEGFTIS--------DWRALEVADNTEVGCIPGEQVMAAARSLDLSEVDALVISCVQMPSLVETAEREFGIPVLSAATAGAYSILRSL.................. 245
33 -9.9404xxh_A mol:protein length:255 HTH-type transcriptional regulator TreR  ali model follow..  11  2.DKVVAII----TRLDSLSENLAVQTMLPAFYEQGYDPIMMESQFSPQLVA--------------EHLGVLKRRNIDGVVLFGFTGIT--EEMLAHWQSSLVLL-ILMQRLYDQGHRNISYLGTTGKRRHEAYLAFCKAHKLHPVA--KQGYENVAKVITPETTALLCATDTLALGASKYLQEQRIDTLLASVGNTPLFLHPEIVTVDPGYAEAGRQAACQLIAQVTGRSEPQQ.......... 247
34 -9.1603jy6_A mol:protein length:276 Transcriptional regulator, LacI family  ali model follow..  10  3LTQSSKLIAVIVANIDDYFSTELFKGISSILESRGYIGVLFDANADIEREK--------------TLLRAIGSRGFDGLILQSFSNPQTVQEILHQ-QMPVVSV-AATTAFRQQGYQHVVVLTSELELSRT-ILAAAQDVDVLEVSESSYNHSEVHQRLTQLITQNDQKTVRWLLEFFPNLIISGLTVTATGFADTDFRMEPKLTLITQNPFLMGASSAEIMLRQLAGEKVAPEKMVIPAKL.. 267
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;