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Query: IDP04391 gene: cotJB; spore coat protein CotJB [Clostridium perfringens ATCC 13124] CPF_1067 [Clostridium perfringens ATCC 13124], from CSGID

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80
# Score Template Links and tools%idFirst MKALELLDDIQKLQFYAVELNLYLDNFPENRKATEDYKEISSKLSELIERFECEYGPIRNFGQAYVENPVAWIEQPWPWEIRYLast
1 -8.1704q7o_A mol:protein length:146 Immunity protein  ali model follow..  10  97.PEELIIPINLAYHYFNIAISDFLIAHPEYQKKCKEIQKTYSQTNCSLHE................................. 145
2 -7.9003rkv_A mol:protein length:162 putative peptidylprolyl isomerase  ali model follow..  15  101FRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAR-ERRAEKKADSRVTYSKMFQP.......................... 162
3 -7.8302fbn_A mol:protein length:198 70 kDa peptidylprolyl isomerase, putative  ali model follow..  18  120YKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKGPLYEEKK.............. 188
4 -7.8104pv6_C mol:protein length:162 N-terminal acetyltransferase complex subunit [ARD1]  ali model follow..  18  93...SALMDAFLSLCREQNMLSVRLEVRTDNDEAIRFYKKYGFVITAMLPNY................................ 140
5 -7.7105k18_B mol:protein length:188 N-terminal acetyltransferase B complex subunit NAT3  ali model follow..  12  91...SKLCLELENLTQVKDTLFIDLFVKVTNTLGRILYEKLGYSVFRRVVGY................................ 138
6 -7.7001kt1_A mol:protein length:457 FK506-binding protein FKBP51  ali model follow..  17  355YRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNERDRRTYANM......................... 412
7 -7.6805g4y_A mol:protein length:179 CHEMOTAXIS PROTEIN  ali model follow..  14  58..QQQALKEIKGLRYSINDLRPVMIMHPKDPDGFAVFNEMVALVKSKGAGMVNYRWPKPGASEPVKKTSYVQLFQPWGW.... 153
8 -7.5403may_A mol:protein length:101 POSSIBLE EXPORTED PROTEIN  ali model follow..  16  13..........RTVGSVAKSMGDYLDSHPETNQVMASLKAHFEANPKVASDLHALSQPLT........................ 74
9 -7.4005mgx_E mol:protein length:290 Peptidyl-prolyl cis-trans isomerase FKBP8  ali model follow..  10  220FRKGKVLAQQGEYSEAIPILRAALKLEPSNKTIHAELSKLVKKHAAQRSTETALYRKMLGNPSRLPAK............... 287
10 -7.2805isv_A mol:protein length:165 Ribosomal-protein-alanine acetyltransferase  ali model follow..  14  82...RALLEHLIDELEKRGVATLWLEVRASNAAAIALYESLGFNEATIRRNY................................ 129

FFAS is supported by the NIH grant R01-GM087218-01
1 3 7 7 9 2   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Sikora S, Godzik A. Combination of multiple alignment analysis and surface mapping paves a way for a detailed pathway reconstruction--the case of VHL (von Hippel-Lindau) protein and angiogenesis regulatory pathway. Protein Sci. 2004 Mar;13(3):786-96. Epub 2004 Feb 06.