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Query: IDP05533 hypothetical protein CD2149 [Clostridium difficile 630] CD2149 [Peptoclostridium difficile 630], from CSGID

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MGRRTTRVSRLGKEKKRSVLIVLAALVLIMGGFTYFFNSKFLYNGKIAKNVYIEGVNVSDMTKAEALKAITDKYTPEDLNLAYDGKKYTISPKDIDLKYDTEDVVKDAYESTKKGSYFQNLKKYIDIRVNKANMKIKAEYDEAKLSSKVSSIADSINVKMKNASISVGSGGLSYTDSVVGREFDLAANKESIYNMIKNKEHKTLELKVNLQKPDITTEQVKTVNSVIGQYSTTYSQAVEGRSYNVGLSARKTSDVLLMPGEEFSYNKLTGPSNKANGYKDAPVIVYGKLEQSAGGGVCQTSSTVYNAALLSGMEITQVTNHSSASTYVPKGRDATVSDGGLNLKFKNPYKHPVYIKNYAGGGSVSSVIYGNSGDKPNISIEVKQTGQNKYSTYRIFKDSNGKVIKKEHISNSSYKELKKLast
1 -8.5601zat_A mol:protein length:250 L,D-transpeptidase  ali model follow..  15  1................................................................KEQLASMNAIANVKATYSINGETFQIPSSDIMSWLTYNDG--------------------------------KVDLDTEQVRQYVTDLGTKYNTSTNDTKFKSTRGEVTVPVGTYSWTIQTDSETEALKKAILAGQDFTRSPIVQGG-------------------TTADHPLIEDTYIEVDLENQHM-------------------------YKDGKVALETDIVSGKPTGVFYVWNKEEDATLKGT---DDGTPYESPVNYWMPIDWTGV--GIHDSDWQPEYGGDLWKTRGSHG.......................................................... 225
2 -6.2503icu_A mol:protein length:194 E3 ubiquitin-protein ligase RNF128  ali model follow..  16  28..........................................................................................................................................................................................................TAYLNVSWRVPHTGVNRTVWELSEEGVYGQ-------------DSPLEPVAGVLVPPDGPGALNACNPHTNFTVPTVWGSTVQVSWLALIQRGGGCTFADKIHLAYERGASGAVIFNFPGTRNEVIPMSHPGAVDIVAI---MIGNLKGTKILQSIQRGIQVTMVI................................................... 177
3 -6.0004ffj_A mol:protein length:210 Riboflavin biosynthesis protein ribBA  ali model follow..  13  4..............................................................................................................................................RKIQEALEALQKGRLVLVIDDKDRENEGDLICSAQAENVNFMATYAKGLICMPMSESLANQLMLSPMVENNTDNHKTAFTVSIDYKETTTGISAEERGLTARMCVAEDITPSDFRRPGHMFPLIAKKGGVLERNGHTEATVDLLKLAGLKECGLCCEIMNHDGKMMRTDDLIQFSKK-HNIPLITIK.......................................................................................... 192
4 -5.8905j6y_A mol:protein length:188 Antifreeze protein  ali model follow..  4.......................................................................................................................................................................DSTPDSLFAGLVGEYYGTNSQLNNISDFRALVDSKEADATFEAANISYGRGSSDAKGTHLQEFLGSDASTLSTDPGDNTDGGIYLQGYVYLEAGTYNFK-----VTADDGYE---ITINGNPVATVDNNQSVYTVT-------ASFTISESGYQAIDMIWWDQGGDYVFQ.................................................................................. 160
5 -5.7903ag7_A mol:protein length:106 Putative uncharacterized protein F9E10.5  ali model follow..  16  2.....................................................................................................................................................................................................................PLGSEEIKNIDAKIRKWSS-------GKSGNIRSLLSTLQ-YILWSGKPVPLMDMIEGNAVRKSYQRALLILHPDKLQQKGASANQMAEKVFELLQEA............................................................................................................ 96
6 -5.5901w4t_A mol:protein length:299 ARYLAMINE N-ACETYLTRANSFERASE  ali model follow..  14  2......................................................................................................................................................................................................GSSSSGLVPRGSHMTPLTPEQTHAYLHHIGDDPGPPSLANLDRLIDAHLRRVAFENLDVLLDRPIEID------------------VFAKVVEGSRGGYCFELNSLFARLLLA-------------LGYELELLVARVRWGLPDDAPLTQQSHLMLRLYLAEGEFLVDVGFGSANPPRALPLPGDEADAGQVHCVRLVDPHAGLYESAVRGRSG....... 188
7 -5.5502qhq_A mol:protein length:125 Unknown function protein VPA0580  ali model follow..  12  1...........................................................................................................................................................................................................................................SNAMALGFGMKMELQQFLDALASSPEKIEFETTMAVIEDNYDFTPAA-FTNGNTQNDAN-GSCKIEATLYREDV---LLHPENNDHQNIRNFMVTGWEGI.................................................................................... 115
8 -5.4801l5j_A mol:protein length:865 Aconitate hydratase 2  ali model follow..  10  480.......................................HSWLNRMLLPDTVGTGGDPIGISFPAGSGLVAFAAATGVMPLDMPESVLVRFKGKMQPGITLRDLVHAIPLYAIKQGLLTVEKKGKKNIFSGRILEIE-GLPDLKVEQAFELTDASAERSAAGCTIKLNKEPIIEYLNSNIVLLKWMIAEELLEADADAEYAAVIDIDLADIKEPIDPDDARPLSAVQGKIDEVFIGSCMTNIGHFRAAGKLLDALWVAPP-----TRMDAAQLTEEGYYSV-FGKSGARIEIPGCSLC-------QARVADG--------------------ATVVSTSTRNFPNRLGTGANVFLASAEL--AAVAALIGKLPTPEEYQTYVAQVDKTAVDTYRYLTEKADGVIFQTAV.......... 865
9 -5.4702q0k_A mol:protein length:311 Thioredoxin reductase  ali model follow..  11  63.........................................................................................................................................................................................................QPWQEQCFRFGLKHEMTAVQRVSKKDSHFVILAEDGKTFEAKSVIIATGGSPKRTGIKGESEYWGKGVSTCATCDG-----FFYKNKEVAVLGGGDTAVEEAIYLANICKKVYLIHRRDGFRCAPIT---LEHAKNNDKIEFLT----------------PYVVEEIKGDASGVSSLSIKNTATNEKRELVVPGFFIFVGYDVNNAVLKQE....... 249
10 -5.3702lxn_A mol:protein length:188 GMP synthase [glutamine-hydrolyzing] subunit A  ali model follow..  12  9........................................................................................................................................................................................................................GQYVHRIHRSLKYIGVSSKIVPNTTPLEEIESNKEVKGIILSGGPDIEKAKNCIDIALNAKLPILGICLGHQIALAYGGEVGRAEAEEYALTLFKNVEFNAWASHKDEVKKVPEGFEILAHSDICQVEAMKHKTKPIY................................................................. 158

FFAS is supported by the NIH grant R01-GM087218-01
1 4 0 1 8 2   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Wooley JC, Godzik A. Probing metagenomics by rapid cluster analysis of very large datasets. PLoS ONE. 2008;3(10):e3375. Epub 2008 Oct 10.