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Query: IDP05554 hypothetical protein CD3669 [Clostridium difficile 630] CD3669 [Peptoclostridium difficile 630], from CSGID

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKNKKIMLVLSILSISIFAVGCTNAQNGSDSSKKETKSNTNVEQPKEENNTEKEVPNNKAKPTPKEETKAQSATIYSFDVDKTDLIENKVDLNKIDENTLFEELQKLKVVPESAKLNSFTTKDIDGVKTGILDVSSDFTKSNLGSDAETLMLDSVARTYIKNMNVEQIKITVDGSNYESGHIVLEEGDYLKLast
1 -39.1005j7r_A mol:protein length:164 Putative Lipoprotein  ali model follow..  18  1..............................................SNADKLAANNNERVKTIANDLIGDIDLSLYFDGTKDEQNPEILVDGDEILGQYLIQALIQGPILPKDTKLLSFDIK----DDIAIINLSKEAIV-NMSATKEQATLEGIIATITQIPSINKINILVDNQMVDSGNFDISKPFG.. 153
2 -31.9006gzb_A mol:protein length:341 Spore germination protein GerM  ali model follow..  16  2....................QSDKAAEEIDPPQDVTFVNDEAGANSNTTAAKKTESEKSDTAKADQASSTVMRELYLIDKNGY-VVAQTLPLPKSESKQALEYLVQGGVLPADTTVNVDIKK----DGTAIADFSNEF--KNYKKEDEQKIVQSVTWTLTQFSSIDKVKLRINGHELKE............ 167
3 -18.4005cyb_A mol:protein length:152 Lipoprotein  ali model follow..  14  1MKLKRFTLSLASLASFSLLVACSQRAQQVQQPVAQQQVQQPAQQNTNTANAGGNQNQAAPVQNQPVAQPTDIDGTYTGQDDGD............................................................................................................ 83
4 -15.8004jg9_A mol:protein length:174 Lipoprotein  ali model follow..  13  1MKK-----IGTMLLFSILIAGCTQAQPDLKKPKKEAIATSSTQVNAPSFFHLSVLKDVNWEETPSFIQEKIPLK-----GIEEKIAMADSPIIANEKNEIMWYFLDPEMPTGKLSIIALKQGSVTPTPLLFQQESSE-PTWTTSNTIDSTTNELPLTMSLPSSGLWVLNIYVNEKYYDQFVITAE...... 174
5 -13.9005nf4_A mol:protein length:451 Minor fimbrium tip subunit Mfa3  ali model follow..  8  1..MKPMSDYDIPTTENLYFQGAMRGVDPQPDPLQPDVYLL------NARAAHTNGEESINMDAEDFEDRVHSLAMLVFDSNTGEKVAEHFSSSIGSGTSTYVFTVKLKPIPNMQTAMASIVNKSDMNHFMQVFRDLDPIHYHNATNNNGFPMSRMYSNQTVTIGVAKLDVNIVEGVENLQKIELCN..... 211
6 -13.4005ok8_A mol:protein length:175 LPP20 lipoprotein  ali model follow..  9  1MKNQVKKILGMSVVAAMVIVGCSHAPKSGISKSNKAYKEATKGAPDDLITNNDVDYSTNQATAKARANLAANLKSTLQKDLENEKTRTVDASGKRSISGTDTEKISQLVDKELIASKMLARYVGKDRVFVLVGLDKQIVDKVREELGMV.......................................... 173
7 -11.6006anv_A mol:protein length:452 anti-CRISPR protein AcrF1 fused with C-terminal MBP tag  ali model follow..  5  41VGARDFDSTEQLESWFYGLPGSGLGRIENAMNEISRRENPLEKIEEGKLVIWINGDKGYNGLAEVGKKFEKDTGI---------------KVTVEHPDKLEEKFPQVAATGDGPDIIFWA-GYAQSGLLAEITPDKAFQDKLYPFTWDAVRYNGKLIAY----AVEALSLIYNKDLLP------NPPKTWE 212
8 -11.4005n2c_A mol:protein length:185 Putative OmpA family lipoprotein  ali model follow..  12  9LLGLDSTENLYFQGIDPFTAACKSGVKLDDKANNAGAVSTQPSADNVAQVNVDPLNDPNSPLAKR--------SIYF-DFDSYSVKDEYQPLMQQHAQYLRHVLIQGNTDERGTS-----------------EYNLALGQKRAEAVRRAMALLGV--------NDSQMEAVSLGKPQATGHDE........ 164
9 -11.3004jrf_A mol:protein length:508 putative cell adhesion protein  ali model follow..  8  1...................GACSNDEEMATGGQNQLPVDGREASVSVAMPKSTGTRALGEHHGTADEQNVKEVLLALFDASDVCLETKTLATTDYILN-------VGGANKAGYDGKAFKVPSATAKVLAVVNPSDKFKTACVASASWSAINGAVEQTLDEVTGTSKNNFMMINAGDNA............ 155
10 -11.2003qfg_A mol:protein length:242 Uncharacterized protein  ali model follow..  13  1..........MGSSENLYFQGCGHHQDSAKKESTSHKKKENDNEELNEELKEFKSKKNMDIKIKGDTIVSDKFEAKIKEDEKKKYIAFKMEITAKKDDKDLN......................................................................................... 99
11 -10.8003omb_A mol:protein length:535 Extracellular solute-binding protein, family 1  ali model follow..  7  2MRRVKAGAVACAVALLGSLSACGGSKKSTTTADGKPIVTVLVKKNANQEKMANMQWAKDLE-------ADCDCKIEW------------QEVTREAWAQQKNATLASGDIADVNLNGYGAVEAYQYPGMF-EDLSKDLDKLP-----------NVKAFFKQKPDAKKMSTDSKGRIYA-DKLGLQVPTTWD 186
12 -10.6004wzz_A mol:protein length:371 Putative sugar ABC transporter, substrate-binding protein  ali model follow..  11  1MSSG---VDLGTENLYFQSMGCSSKTDNTSSNKAKTPTTAATTGGDGYATTAT----QKESEGYKQVIEANGGKCVIQEPKSATAEDQITCINNAISQGVDCIAIA----ANDTDALEPALTEAKNQGIHVLSLDSDAILDISGGSGDWAVLSAASTATNQNAWIDGMKTVMQDSKYSK............ 205
13 -10.2004g68_A mol:protein length:456 ABC transporter  ali model follow..  7  13NNLSKSNTSNSSKTSSSSKKMCSSNNLSKSNTSNSSKTSSSSKKITLT---------NLFTGEPAKTKVKEIIDQW--NKENPNVQIVESVTENDAYKTKIKAAIAANEAPDIFQTWAGGFSQPFVEAGKVLQLDSYLNDGTKDQLLPGSF-----------------NVTYNGKIYKYN---VKVPTTFS 194
14 -9.8104faj_A mol:protein length:564 PrgZ  ali model follow..  13  10MKKYKKFCFLGIGLLPLVLASCGTNTATKDSQDATEKKVEQVATLTAGTPVQSLDPATAVDQTSITLLANVMEGLYRLDEKNQPQPAIAAGQPKVSNNGKTYTI------------IRDGAKWSDGTQITASDFVAAWQRV---VSPNVELFSAIKNA-IASGKQAKDTLAVKSIGEKTLEIELVEPTPY. 191
15 -9.7703x2r_D mol:protein length:277 CsgG  ali model follow..  11  1MQR------LFLLVAVMLLSGCLTAPPKEAARPTLMPRAQSYKDLTH-----------------PAPTGKIFVSVYNIQDETGQFKPYSTAVPQSATAMLVTALKDSRIPLERQGLQNLLNERKIIRAAQENGTVAINNRIPLQSAANIMVEGSIIGGADTQYQLDQIAVNLRVVNVSTGEI......... 186
16 -9.6504r9f_A mol:protein length:447 MBP1  ali model follow..  5  1MSKGKAIIAMLLVIAVLAFAGCSGSSTKNSSTNGNKKQVVLT---------AGPDGDAVVSLAKEYSKTHPNVQI-----KAQMVSGAGIAATQGGGQGKFLSAVAAGNPPDLVLYWGQDALPGLADQGAIIPLDDYLKDVDTSAAYNAMKYKGKIYGL----MVNVRVLFWNKDLFKQAGLDPNTP.... 184
17 -9.5005d0o_D mol:protein length:245 Outer membrane protein assembly factor BamD  ali model follow..  8  1..MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLYYKNADLPLAQAAIDRF-----------IRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNLVFLKDRLAKYEYSVAEYYTER..... 188
18 -9.4005u4o_A mol:protein length:521 ABC transporter substrate-binding protein  ali model follow..  11  3FKRGLVSCFIAILCLSVFLAGCSSNAKTGNEGSGSKGTKEGGVLTIARLSDADNLDPHFITNIPSASVVYHKVNLVQRDKNMDFKPMLAKEWKQIDDLNWEFKLQQGVTFQDGAPFNAEAVKKNFESMIQEIKVIDEYTVQFILKYPYSPLLSIFASSILSPKAIDEKGKGLAQHPVGTGPYTFKS..... 208
19 -9.3004mfi_A mol:protein length:436 Sn-glycerol-3-phosphate ABC transporter substrate-binding protein UspB  ali model follow..  5  1MDLNRRQFLALAAAAAGVTAGCAGMGGGGSVKSGSGPID-------------------SSHPGQSSAAERELIGRFQDRFPTLSVKLIDAGKDYDEVAQKFNAALIGTDVPDVVLLDDRWWFHFALSGVL-TALDDLFGQVGVDTTDADYEFNGRHYAV----ARSTPLFYYNKAAWQQAGLPDRGPQSWS 178
20 -9.2402nc8_A mol:protein length:182 Lipoprotein LppM  ali model follow..  6  1......MGGGGGRENLYFQGHMLRVRASITISPDDLAAKPKNSKDTGPALDGDVPFSQKVAVSNYDSDGYVGSQAVFSDLTFAEL-PQLANMNSDAAGVNLSLRRNGNIVILEGRADLTSVSDPDADVELTVAFPAAVTSTNGDRIEPEVVQWKLKPG-------VVSTMSAQARYTDPN........... 173
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. Discovering new genes with advanced homology detection. Trends Biotechnol. 2002 Aug;20(8):315-6.