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Query: IDP05557 gene: glyQ; glycyl-tRNA synthetase subunit alpha [Listeria monocytogenes EGD-e] lmo1459 [Listeria monocytogenes EGD-e], from CSGID

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSPYTFLKAIGPEPWKAGYVEPSRRPADGRYGENPNRLFQHHQFQVVMKPSPDNIQELYLGSLEKLGINPLEHDIRFVEDNWENPSLGCAGLGWEVWLDGMEITQFTYFQQVGGLECFPVTSEITYGVERLASYIQDKENVFDLEWTEGISYRDIFFQAEFENSTYAFETSNTDMLLTLFDTYEREATRQMQDGLVFPAYDYVLKCSHTFNLLDARGVVSVTERAQYIGRIRNLARRIAKTFYESREKLGFPLLKEEGGKRHELast
1 -108.0001j5w_A mol:protein length:298 Glycyl-tRNA synthetase alpha chain  ali model follow..  56  40FHPATFFGSLRKGPWKVAYVQPSRRPTDGRYGENPNRLQRYFQYQVIIKPSPENSQELYLESLEYLGINLKEHDIRFVEDNWESPTLGAWGVGWEVWLDGMEITQFTYFQQIGGISLKDIPLEITYGLERIAMYLQGVDNVYEVQWNENVKYGDVFLENEREFSVFNFEEANVGLLFRHFDEYEKEFYRLVEKNLYLPAYDYILKCSHTFNLLDARGAISVSQRQTYVKRIQAMARKAARVFLEVQANENSP........... 291
2 -107.0005f5w_A mol:protein length:299 Glycine--tRNA ligase alpha subunit  ali model follow..  64  42MNPATFLKVLGKKPWNVAYVEPSRRPQDGRYGENPNRLQHYYQFQVILKPAPRNPQEIYLESLERLGINPLEHDIRFVEDDWESPTLGAWGLGWEVWLDGMEITQFTYFQQAGGLDLDEISVEITYGLERIAMYIQDKDSVFDIEWKEGITYGEIFKRSEWEWSKYNFELADTDMLFQVYEMFEKESKRMVEEGLIFPAYDYLLKCSHVFNILDARGAISVQERARYIRRMNNLAREIAKLYLQVFENVG............. 291
3 -102.0003rf1_A mol:protein length:311 Glycyl-tRNA synthetase alpha subunit  ali model follow..  55  52FHPATFLRSLGKKPWAAAYVAPSRRPTDGRYGENPNRLGAYYQFQVLIKPSPDNIQELYLKSLENLGFDLKSHDIRFVEDNWESPSLGAWGLGWEVWLDGMEVTQFTYFQQVGGIAVDLVSAEITYGLERIAMYLQNVDNVYDIVWSEFNKYADVHKQSEYEFSKYNFEVSDVKILNEQFENSYKECKNILEQGLALPAYDYCMLAAHTFNLLDARGAISVAQRQDYMLKIRELSKNCAEIYKKNLNEAE............. 305
4 -63.9002zze_A mol:protein length:752 Alanyl-tRNA synthetase  ali model follow..  19  104FQPWVISGEADPPANPLVISQPSIRFTDGITGRHFTIFEMMAHHAFNYPYWMDETVELAFEFF-TKELKMKPEDITFKENPWAGG--GNAGPAFEVLYRGLEVATLVFMQYKKAIPMETKVVDTGYGLERLVWMSQGTPTAYDAVLGYVVEPLKKMAGIEKIDEKIMFDIEDLGDLRYLREQVAKRVGELEKAIRPYELIYAIADHTKALTFMLADGVVPSNVKAGYLARIRKSIRHLRELGLEKELHKTFPEFKEMEDIILE 414
5 -57.0001riq_A mol:protein length:465 Alanyl-tRNA synthetase  ali model follow..  14  44MVPFVFLGLEKRPYKRATSCQKCLRVNDGYTSRHHTFFEMLGNFSFGDYFKKEAIEYAWEFVTEVLKLPKEKLYVSVEDNFWQMGDVGPCGPSSEIYVD-LEIWNLVFMQYNRDTPLPHPNIDTGMGLERIASVLQGKNSNFEIDIIFPLIQFGEEVSGK----------------------------KYGEKFETDVALRVIADHLRAITFAISDGVIPSNEGRGYVIR-RILRRAMR---FGYKLGIENPFLYKGVDLVVD 326
6 -56.5003hxu_A mol:protein length:441 Alanyl-tRNA synthetase  ali model follow..  14  43MNQFVFLGLDKRNYSRATTSQRCVRANDGYTARHHTFFEMLGNFSFGDYFKLDAILFAWLLLTSEKWFALPKERLWVSDNFWQMGDTGPCGPCTEIFYD-IEIWNIVFMQFNRQEPLPKPSVDTGMGLERIAAVLQHVNSNYDIDLFRTL--------------------------------IQAVAKVTGATDLSNKSLRVIADHIRSCAFLIADGVMPSNENRGYVLR-RIIRRAVRH---GNMLGAKETFFYKLVGPLID 339
7 -55.4004xem_A mol:protein length:475 Alanine--tRNA ligase, cytoplasmic  ali model follow..  15  60MNQFIFLNTIDPSHSRAANTQKCIRANDGKDVYHHTFFEMLGSWSFGDYFKELACKMALELLTQEFGIPIERLYVTYKDNFWEMGDTGPCGPCSEIHYD-LEIWNLVFIQYNREKPLPKKSIDTGMGLERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARPYTGKVGAEDADGI----------------------MAYRVLADHARTITVALADGGRPDNTGRGYVLR-RILRRAVRYAHVVQSLGDAFPELKKDPDMVKD 387
8 -48.1003wqy_A mol:protein length:906 Alanine--tRNA ligase  ali model follow..  15  104FQPFVTSGVAPPPANPLTISQPCIRLDDGRTGRHLTLFEMMAHHAFNYPYWKNETVAYCTELL--NELGVKKEDIVYKEEPWAGG--GNAGPCLEAIVGGLEVATLVFMNLEEHRKMDNYIVDTGYGLERFVWASKGTPTVYDAIFPEVVDTIIRRIVAESSKLAGIMGELRGERLNQLRKSVADTVGELEGIVVPLEKVYSLADHTRCILFMLGDGLVPSNAGAGYLARIRRSLRLAEELELGKILGFEFDVPLSTVQEILE 413
9 -12.3005k1p_A mol:protein length:274 Pyrrolysine--tRNA ligase  ali model follow..  15  111LRPMLAPNLYNPDPIKIFEIGPCYR-KESDGKEHLEEFTMLAFAQMGSGCTRENLESIITDFLNHLGI----------DFKIVGDSCMVYGDTLDVMHGDLELSSAVVGPLDREWGIDKPWIGAGFGLERLLKVKHDFKNIKRA....................................................................................................................... 254
10 -12.0004tqd_A mol:protein length:291 Pyrrolysine--tRNA ligase  ali model follow..  15  128LRPMLAPNLYNPDPIKIFEIGPCYR-KESDGKEHLEEFTMLSFIQMGSGCTRENLESIITDFLNHLGI----------DFKIVGDSCMVYGDTLDVMHGDLELSSAVVGPLDREWGIDKPWIGAGFGLERLLKVKHDFKNIKRA....................................................................................................................... 271
11 -12.0004q6g_A mol:protein length:267 Pyrrolysine--tRNA ligase  ali model follow..  16  110LRPMVAPNIFNPDPIKIFEIGPCYR-KESDGKEHLEEFTMLNFFQMGSGCTRENLESIITDFLNHLGI----------DFKIVGDSCSVYGDTLDVMHGDLELSSAVVGPLDREWGIDKPWIGAGFGLERLLKVKHDFKNIKRA....................................................................................................................... 253
12 -11.2002e3c_A mol:protein length:291 Pyrrolysyl-tRNA synthetase  ali model follow..  15  128LRPMLAPNLYNPDPIKIFEIGPCYR-KESDGKEHLEEFTMLNFCQMGSGCTRENLESIITDFLNHLGI----------DFKIVGDSCMVYGDTLDVMHGDLELSSAVVGPLDREWGIDKPWIGAGFGLERLLKVKHDFKNIKRA....................................................................................................................... 271
13 -10.3002du3_A mol:protein length:534 O-phosphoseryl-tRNA synthetase  ali model follow..  13  202..........LPLPIKLFSIDRCFRREQGEDATRLYTYFSASCVLVDEELSVDDGKAVAEALLRQ--FGFENFRFRKDEKRSKYYI-----PDTQTEVGWIEIATIYSPTALAEYDIPYPVMNLGLGVERLAMILYGYDDVRKM-VYPQIHGEIKLSDLDIAREIKVKEVPQTAVGLKIAQSIVETAEKHASEPSPCS-------------FLAFEGEMMGRNVRVYVVEEEENTKLCNEVVVYKGDIYGIPKTKKWRSFFEE 456
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 6 6   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Pio F, Chu Z, Reed JC, Godzik A. PAAD - a new protein domain associated with apoptosis, cancer and autoimmune diseases. Trends Biochem Sci. 2001 Feb;26(2):85-7.