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Query: IDP06256 gene: glyQ; glycyl-tRNA synthetase subunit alpha [Streptococcus pneumoniae TIGR4] NP_345929 [Streptococcus pneumoniae TIGR4], from CSGID

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSKKLTFQEIILTLQQFWNDQDCMLMQAYDNEKGAGTMSPYTFLRAIGPEPWNAAYVEPSRRPADGRYGENPNRLYQHHQFQVVMKPSPSNIQELYLESLEKLGINPLEHDIRFVEDNWENPSTGSAGLGWEVWLDGMEITQFTYFQQVGGLATGPVTAEVTYGLERLASYIQEVDSVYDIEWADGVKYGEIFIQPEYEHSKYSFEISDQEMLLENFDKFEKEAGRALEEGLVHPAYDYVLKCSHTFNLLDARGAVSVTERAGYIARIRNLARVVAKTFVAERKRLGYPLLDEETRAKLLAEDAELast
1 -121.0001j5w_A mol:protein length:298 Glycyl-tRNA synthetase alpha chain  ali model follow..  56  4.DKIMYLQDVIMKLNDFWASKGCLLEQPYDMEVGAGTFHPATFFGSLRKGPWKVAYVQPSRRPTDGRYGENPNRLQRYFQYQVIIKPSPENSQELYLESLEYLGINLKEHDIRFVEDNWESPTLGAWGVGWEVWLDGMEITQFTYFQQIGGISLKDIPLEITYGLERIAMYLQGVDNVYEVQWNENVKYGDVFLENEREFSVFNFEEANVGLLFRHFDEYEKEFYRLVEKNLYLPAYDYILKCSHTFNLLDARGAISVSQRQTYVKRIQAMARKAARVFLEVQANENSP................ 291
2 -118.0005f5w_A mol:protein length:299 Glycine--tRNA ligase alpha subunit  ali model follow..  63  5YFQSMYFQDIIMTLHKFWAEKGCLIWQPYDVEVGAGTMNPATFLKVLGKKPWNVAYVEPSRRPQDGRYGENPNRLQHYYQFQVILKPAPRNPQEIYLESLERLGINPLEHDIRFVEDDWESPTLGAWGLGWEVWLDGMEITQFTYFQQAGGLDLDEISVEITYGLERIAMYIQDKDSVFDIEWKEGITYGEIFKRSEWEWSKYNFELADTDMLFQVYEMFEKESKRMVEEGLIFPAYDYLLKCSHVFNILDARGAISVQERARYIRRMNNLAREIAKLYLQVFENVG.................. 291
3 -113.0003rf1_A mol:protein length:311 Glycyl-tRNA synthetase alpha subunit  ali model follow..  58  15QSNAMTFSQMILNLQNYWQEQGCAIMQPYDMPAGAGTFHPATFLRSLGKKPWAAAYVAPSRRPTDGRYGENPNRLGAYYQFQVLIKPSPDNIQELYLKSLENLGFDLKSHDIRFVEDNWESPSLGAWGLGWEVWLDGMEVTQFTYFQQVGGIAVDLVSAEITYGLERIAMYLQNVDNVYDIVWSEFNKYADVHKQSEYEFSKYNFEVSDVKILNEQFENSYKECKNILEQGLALPAYDYCMLAAHTFNLLDARGAISVAQRQDYMLKIRELSKNCAEIYKKNLNEAE.................. 305
4 -65.2002zze_A mol:protein length:752 Alanyl-tRNA synthetase  ali model follow..  21  53IPRKYTLDEMREKFLRFFEKHPHGRVKRYPVLASIMDFQPWVISGEADPPANPLVISQPSIRFTDGITGRHFTIFEMMAHHAFNYPYWMDETVELAFEFFTKE-LKMKPEDITFKENPWAGG--GNAGPAFEVLYRGLEVATLVFMQYKKAIPMETKVVDTGYGLERLVWMSQGTPTAYDAVLGYVVEPLKKMAGIEKIDEKIMFDIEDLGDLRYLREQVAKRVGITVEEIRPYELIYAIADHTKALTFMLADGVVPSNVKAGYLARIRKSIRHLRELGLEKELHKTFPEFKEMEDIILEMIELE 419
5 -62.6003hxu_A mol:protein length:441 Alanyl-tRNA synthetase  ali model follow..  14  1...SKSTAEIRQAFLDFFHSKGHQVVASSSLVPNAGMNQFKVFLGLDKRNYSRATTSQRCVRAGGGYTARHHTFFEMLGNFSFGD-YFKLDAILFAWLLLTSKWFALPKERLWVSDNFWQMGDTGPCGPCTEIFYD-IEIWNIVFMQFNRQEPLPKPSVDTGMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDLSN--------------------------------KSLRVIADHIRSCAFLIADGVMPSNENRGYVLRIRRAVRHGNMLGAKDVMGSAGEDLKRQQAQVEQVLKTE 362
6 -59.5001riq_A mol:protein length:465 Alanyl-tRNA synthetase  ali model follow..  15  2...SLSAHEIRELFLSFFEKKGHTRVKSAPLVPNAGMVPFKVFLGLEKRPYKRATSCQKCLRVSGGYTSRHHTFFEMLGNFSFGD-YFKKEAIEYAWEFVTEV-IGIPSERIW-EDNFWQMGDVGPCGPSSEIYVD-LEIWNLVFMQYNRDTPLPHPNIDTGMGLERIASVLQGKNSNFEIDIIFPLIQFGEEVSGKKYG----------------------------EKFETDVALRVIADHLRAITFAISDGVIPSNEGRGYVIRLRRAMRFGYKLGIEDIMKEPYPELELSREFVKGIVKGE 349
7 -58.6004xem_A mol:protein length:475 Alanine--tRNA ligase, cytoplasmic  ali model follow..  17  15MDSTLTASEIRQRFIDFFKRNEHTYVHSSATIPNAGMNQFKIFLNTIDPSHSRAANTQKCIRAGGGKDVYHHTFFEMLGSWSFGD-YFKELACKMALELLTQENLGLDDTKIL-KDNFWEMGDTGPCGPCSEIHYD-LEIWNLVFIQYNREKPLPKKSIDTGMGLERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARPYTGKVGAE---------------------DADGIDMAYRVLADHARTITVALADGGRPDNTGRGYVLRLRRAVRYAHEK-VVQSLGDAFPELKKDPDMVKDIINEE 392
8 -50.4003wqy_A mol:protein length:906 Alanine--tRNA ligase  ali model follow..  17  56FKKPFELDEMREYYLNFFERRGHGRIERYPVVASIADFQPFVTSGVAPPPANPLTISQPCIRLDDGRTGRHLTLFEMMAHHAFNYPYWKNETVAYCTELLNELGV--KKEDIVYKEEPWAGG--GNAGPCLEAIVGGLEVATLVFMNLEEHRKMDNYIVDTGYGLERFVWASKGTPTVYDAIFPEVVDTIIDNSNVSFNREAGIMGELRGERLNQLRKSVADTVGVSVEEVVPLEKVYSLADHTRCILFMLGDGLVPSNAGAGYLARIRRSLRLAEELELGKILGFEFDVPLSTVQEILELEKER 418
9 -15.0005k1p_A mol:protein length:274 Pyrrolysine--tRNA ligase  ali model follow..  13  57......LGKLEREITRFFVDRGFLEIKSPILILAPNLYNYLRKLDRALPDPIKIFEIGPCYR-KESDGKEHLEEFTMLAFAQMGSGCTRENLESIITDFLNHLGI----------DFKIVGDSCMVYGDTLDVMHGDLELSSAVVGPLDREWGIDKPWIGAGFGLERLLKVKHDFKNIKRA............................................................................................................................ 254
10 -14.7004tqd_A mol:protein length:291 Pyrrolysine--tRNA ligase  ali model follow..  12  69.ERENYLGKLEREITRFFVDRGFLEIKSPILILAPNLYNYLRKLDRALPDPIKIFEIGPCYR-KESDGKEHLEEFTMLSFIQMGSGCTRENLESIITDFLNHLGI----------DFKIVGDSCMVYGDTLDVMHGDLELSSAVVGPLDREWGIDKPWIGAGFGLERLLKVKHDFKNIKRA............................................................................................................................ 271
11 -14.2004q6g_A mol:protein length:267 Pyrrolysine--tRNA ligase  ali model follow..  13  56......LGKLEREITRFFVDRGFLEIKSPILIVAPNIFNYARKLDRALPDPIKIFEIGPCYR-KESDGKEHLEEFTMLNFFQMGSGCTRENLESIITDFLNHLGI----------DFKIVGDSCSVYGDTLDVMHGDLELSSAVVGPLDREWGIDKPWIGAGFGLERLLKVKHDFKNIKRA............................................................................................................................ 253
12 -13.5002e3c_A mol:protein length:291 Pyrrolysyl-tRNA synthetase  ali model follow..  13  75.......GKLEREITRFFVDRGFLEIKSPILILAPNLYNYLRKLDRALPDPIKIFEIGPCYR-KESDGKEHLEEFTMLNFCQMGSGCTRENLESIITDFLNHLGI----------DFKIVGDSCMVYGDTLDVMHGDLELSSAVVGPLDREWGIDKPWIGAGFGLERLLKVKHDFKNIKRA............................................................................................................................ 271
13 -10.2001n9w_A mol:protein length:422 aspartyl-tRNA synthetase 2  ali model follow..  12  129.......AALVRGFRRYLDRQDFTEIFTPKVVRAGAAQSPQLYKQIMVGVFERVYEVAPVWRMEEHHTSRHLNEYLSL-DVEMGFIADEEDLMRLEEALLAEMLEEALNTRLTHAEPFYTYPEEDGTTRSFDLLFRGLEITS-ELLESLKAKGMDPEAFHFAIGAERLTQKLLGLPNVRYARAF......................................................................................................................... 413
14 -9.8003qtc_A mol:protein length:290 Pyrrolysyl-tRNA synthetase  ali model follow..  12  66.ERENYLGKLEREITRFFVDRGFLEIKSPILILTPNLYNYLRKLDRALPDPIKIFEIGPCYR-KESDGKEHLEEFTMLVFWQMGSGCTRENLESIITDFLNHLGI----------DFKIVGDSCMVFGDTLDVMHGDLELSSALVGPLDREWGIDKPWIGAGFGLERLLKVKHDFKNIKRA............................................................................................................................ 268
15 -9.5404cs2_A mol:protein length:274 PYRROLYSINE--TRNA LIGASE  ali model follow..  13  57......LGKLEREITRFFVDRGFLEIKSPILILAPNLANYLRKLDRALPDPIKIFEIGPCYR-KESDGKEHLEEFTMLNFCQMGSGCTRENLESIITDFLNHLGIDFKIV----------GDSCMVFGDTLDVMHGDLELSSAVVIPLDREWGIDKPWIGAGFGLERLLKVKHDFKNIKRA............................................................................................................................ 254
16 -9.5202zni_A mol:protein length:308 Pyrrolysyl-tRNA synthetase  ali model follow..  10  82.KHRPALLELEEKLAKALHQQGFVQVVTPTIILAPNLYTLWRELERLWDKPIRIFEIGTCYR-KESQGAQHLNEFTMLNLTELGTPL--EERHQRLEDMARWV------EAAGIREFELVTESSVVYGDTVDVMKGDLELASGAMGPHFLDEKIFDPWVGLGFGLERLLMIREGTQHVQSM............................................................................................................................ 287
17 -9.3604bw9_A mol:protein length:291 PYRROLYSINE--TRNA LIGASE  ali model follow..  13  75.......GKLEREITRFFVDRGFLEIKSPILIPAPNLGNYLRKLDRALPDPIKIFEIGPCYR-KESDGKEHLEEFTMLNFCQMGSGCTRENLESIITDFLNHLGIDFKIV-----------DSCMVFGDTLDVMHGDLELSSAVVGPLDREWGIDKPWIGAGFGLERLLKVKHDFKNIKRAA........................................................................................................................... 272
18 -9.3103g1z_A mol:protein length:326 Putative lysyl-tRNA synthetase  ali model follow..  12  21.......AAIMAEIRRFFADRGVLEVETPCMSQATVTSPEYHMKRLLAAGCGPVFQLCRSFR-NEEMGRHHNPEFTMLEWYRPHYDM--YRLMNEVDDLLQQVLDCQPAESLSYQQTMGVEPHIGKEKPTFEVYYKGIELAN--FHELTDAREQPQQPIDVALGVDRLVMLALGAESLADV............................................................................................................................ 318
19 -9.1903pco_A mol:protein length:327 Phenylalanyl-tRNA synthetase, alpha subunit  ali model follow..  13  109......VTRTIDRIESFFGELGFTVATGPEIEDDYHNFDALNI-----PGHHPARADHDTFWFDNDYDQTHTPMFHQMEGLIVDTNISFTNLKGTLHDFLRNFFE--EDLQIRFRPSYFPFTE-----PSAEVDVKWLEVLGC-VLRNVGIDPEVYSGFAFGMGMERLTMLRYGVTDL............................................................................................................................... 312
20 -9.1902du3_A mol:protein length:534 O-phosphoseryl-tRNA synthetase  ali model follow..  10  155VDDITAVKILDEVFPEFKELKPISSTLTLRSHMTTGWFITLSHIADKLPLPIKLFSIDRCFRREQGEDATRLYTYFSASCVLVDEELSVDDGKAVAEALLRQFGF--ENFRFRKDEKRSKYYI-----PDTQTEVGWIEIATIYSPTALAEYDIPYPVMNLGLGVERLAMILYGYDDVRKM-VYPQIHGEIKLSDLDIAREIKVKEVPQTAVGLKIAQSIVETAEKHASEP-------------SPCSFLAFEGEMMGRNVRVYVVEEEENTKLCNEVVVYKGDIYGIPKTKKWRS......... 452
21 -9.1102rhq_A mol:protein length:294 Phenylalanyl-tRNA synthetase alpha chain  ali model follow..  13  49......LTRTVEEIEDLFLGLGYEIVDGYEVEQDYYNFQARTMEKRNGQGPVKIICPGKVYR-RDSDDATHSHQFTQIEGLVVDKNIKMSDLKGTLELVAKKLFGADREIRLRFTEPSVEVDVSCFKCKGKGCNVGWIEILGA-VLEMAGFDSNEYSGFAFGMGPDRIAMLKYGIEDI............................................................................................................................... 266
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 1 0 5   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;