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Query: IDP90401 hypothetical protein [Chlamydia trachomatis D/UW-3/CX] CT_579 [Chlamydia trachomatis D/UW-3/CX], from CSGID

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MTTGVRGDNAPDPSLLAQLTQNANSASAASTGKNGQVAGAKQENVDASFEDLLQDAQGTGGSKKATANQTSKSGKSEKAQASSGTSTTTSVAQASQTATAQAVHGARDSGFNSDGSATLPSPTGTEVNGVVLRKGMGTLALMGLIMTLLAQASAKSWSSSFQQQNQAIQNQVAMAPEIGNAIRTQANHQAQATELQAQQSLISGITNIVGFAVSVGGGILSASKSLGGLKSAAFTNETASATTSATSSLAKTATSALDDVAGTATAVGAKATSGAASAASSAATKLTQNMAESASKTLSQTASKSAGGLFGQALNTPSWSEKVSRGMNVVKTQGTRAAKFAGRALSSAMNISQMVHGLTAGIDGIVGGVIGAQVAQEQRMAGMAEARAEELKSLNSVQAQYASQAQQLQEQSQQSFNSALQTLQSISDSALQTTASMFNLast
1 -4.9903wzi_A mol:protein length:110 Uncharacterized protein AF_1864  ali model follow..  13  1...................................................................................GSHMASMKFAVIDRKNFTLIHFEIEKPIKPEILKEIEIPSVDTRKGVVI-SGRGPIWLHCFLAHKYHHTP---FVAVYDPRLGAVVVQSHSELREGDVI-----------DVVVEEILKGGVRHV....................................................................................................................................................................................................................................... 110
2 -4.6902okk_A mol:protein length:497 Glutamate decarboxylase 2  ali model follow..  12  51.......................................................................................................................PNELLQEYNWELADQPQNLEEILMHCQTTLKYAIKTGHPRYFNQLSTGLDMVGLAADWLTSTANTNMTYEIAPVFVLLEYVTLKKMREIIGWPGGSGDGIFSPGGAISNMYAMMIARF--KMFPEVKEKGMAALPRLIAFTSEHSHFSLKKGAAALGIGTDSVILIKCDERGKMIPSDLERRILEA-----------------KQKGF-VSATAGTTVYG----AFDPLLAVADICYKIWMHVDAAWGGGLLMSRKHKWKLSGVERANSGLMQNCNQMHASYLFQQDKHYDLSYDTGDKALQC................. 359
3 -4.6102hjd_A mol:protein length:102 Quorum-sensing antiactivator  ali model follow..  15  1......................................................................................................................MDLKDSVVSDTFELRPVIGLTRGL---LTANAIRLHRQLLEKADQLFQVLPDDIKIGTAAGGEQ--HLEYIEAMIEMHAQMSAVNTLVGLLGFIPKV................................................................................................................................................................................................................................ 99
4 -4.5003wzh_A mol:protein length:112 Uncharacterized protein AF_1864  ali model follow..  15  34..................................................................................................................ILKEIEIPSVDTRKGVVI-SGRGPMWMHCFLAHKYHHTP---FVAVYDPRLGAVVVQSHSELREGDVI-----------DVVVEEILKGGVRHV....................................................................................................................................................................................................................................... 112
5 -4.4404xk8_F mol:protein length:151 Photosystem I reaction center subunit III, chloroplastic  ali model follow..  16  5....................................................LTPCKESKQFAKREKQALKKLQASLKLYADDSAPALAIKATMEKTKKRFDNYGKYGLLCGSDGLPHLIVSGDQRHWGEFITPGILFLYIAGWI-------VGRSYLIAIRDEKKPTQKEI----IIDVPLASRLLFRGFSWPVAAYRELLNG........................................................................................................................................................................................................................................... 147
6 -4.3706frk_u mol:protein length:568 Signal recognition particle subunit SRP68  ali model follow..  8  73........................................DAERAWSYAMQLKQEANTEPRKRFHLLSRLRKAVKAEELERLCESNRVDAKTKLEAQAYTAYLSGMLRFEHQEW------------------KAAIEAFNKCKTIYEKLASAFTEEQAVLYNQRVEEISPNIRYC-NIGDQSAINELMQMRLRSGGTEGLLAEKLEALI-----------TRAKQAATMSEVEWRGRTVPVKIDKVRIFLLGLADNEAAIAQAESEETKSMLSECRDAIQAVREELKPDQKQRDYTLDGESGKVSNLQYLHSYLTYIKLSTAIRRNENMAKGLQKALQQ-ESKRSPRPQDLIRLYDIILQNLVELLQ------LEEDRAFQKEIGLKTLVFKAYRCFFIAQSYVLVKKWSEALVLYDRVLKYANEVNSD.......... 441
7 -4.3104gk0_E mol:protein length:136 DNA repair protein REV1  ali model follow..  11  2...................................................LKHEGPPAEKPLEELSASTSGVPGLSSLQSDPAGCVRPPAPNLAGAVEFNDVKT----------ITTISDPMEEDIL-LIEEKDLEKLLVIKYMKRLMQQSVESVWNMAFDFILDNVQVVLQQ......................................................................................................................................................................................................................................................................... 127
8 -4.2902qpv_A mol:protein length:156 Uncharacterized protein Atu1531  ali model follow..  13  2..................................................................................................................................................................................................................................................................................GSSSSGRENLYFQGHMPVMQSRIIHLSVEKPWAEVYANPGNMPRWAAGLAGGLEADGEDWIAKGGPLGEVRVNFAPHNE-----FGVIDHVVTLPDGLKVYNALRVTPNGSG-----TEVSFTLLRLEGMTDEDFEQDASAITADLEMLKSLLEAD......... 150
9 -4.2801kag_A mol:protein length:173 Shikimate kinase I  ali model follow..  12  4....................................................................................................................................KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRT------GADVGWVFDLEGEEGFRDREEKVINELTEKQGIVLATGGGSVKSRETRNRLSARGVVVYLETTIEKQLARTQRDKKRPLLHVETPPREVLEALANERNPLYEEIADVTIRTDDQSAKVVANQ........................................................................................................................................... 165
10 -4.2703vp6_A mol:protein length:511 Glutamate decarboxylase 1  ali model follow..  12  71....................................................................................................................................DHPESLEQILVDCRDTLKYGVRTGHPRFFNQLSTGLDIIGLAGEWLTSTANTNMTYEIAPVFVLMEQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARY--KYFPEVKTKGMAAVPKLVLFTSEQSHYSIKKAGAALGFGTDNVILIKCNERGKIIPADFEAKILEA-----------------KQKGY-VNATAGTTVYG----AFDPIQEIADICYNLWLHVDAAWGGGLLMSRKHRHKLNGIERANSGILQGCNQMHASYLFQQDKHYDVSYDTGDKAIQCGRHV............. 370
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Jaroszewski L, Godzik A. Sequence clustering strategies improve remote homology recognitions while reducing search times. Protein Eng. 2002 Aug;15(8):643-9.