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Query: IDP90410 hypothetical protein [Chlamydia trachomatis D/UW-3/CX] CT_663 [Chlamydia trachomatis D/UW-3/CX], from CSGID

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130
# Score Template Links and tools%idFirst MLEKLIKNFVAYMGVASELEFDADGSYVFPISSLVRMRVRQNADEEIIISAFLGEIPASMDIEKAYARMMEGNLFGQETGGAALGLDSDGHAVLVRRVPGEVSQEDFASYIESVLNYAEAWLEDLGLSKTEQELast
1 -45.9003epu_A mol:protein length:144 STM2138 Virulence Chaperone  ali model follow..  21  5.ADRLLRQFSLKLNTD-SIVFDENRLCSFIIDNRYRILLTSTNSEYIMIYGFCGKPPDN---NNLAFEFLNANLWFAENNGPHLCYDNNSQSLLLNFSLNESSVEKLECEIEVVIRSMENLYHILQDKGITLD 134
2 -44.3005wez_A mol:protein length:139 Tir chaperone  ali model follow..  22  6.SELLLDRFAEKIGVG-SISFNENRLCSFAIDEIYYISLSDANDEYMMIYGVCGKFPTD--NPNFALEILNANLWFAENGGPYLCYESGAQSLLLRFPLDDATPEKLENEIEVVVKSMENLYLVLHNQGITLE 136
3 -43.8001k3e_A mol:protein length:156 CesT  ali model follow..  20  5.SELLLEKFAEKIGIG-SISFNENRLCSFAIDEIYYISLSDANDEYMMIYGVCGKFPTD--NSNFALEILNANLWFAENGGPYLCYEAGAQSLLLRFPLDDATPEKLENEIEVVVKSMENLYLVLHNQGITLE 135
4 -43.6004gf3_A mol:protein length:141 Putative yopH targeting protein  ali model follow..  19  4.YSSLLEEFATELGLE-EIETNELGHGAVTIDKIWVVHLAPINEKELVAFMRAGILT----GQSQLYDILRKNLFSPLSGVIRCALDKDDHWLLWQLNINDTSGTQLASVLTSLVDKAVTLSCEPTMKKEEDD 131
5 -42.6005z38_A mol:protein length:158 CesT protein  ali model follow..  22  7.SELLLDRFAEKIGVG-SISFNENRLCSFAIDEIYYISLSDANDEYMMIYGVCGKFPTD--NPNFALEILNANLWFAENGGPYLCYESGAQSLLLRFPLDDATPEKLENEIEVVVKSMENLYLVLHNQGITLE 137
6 -41.4001jyo_A mol:protein length:130 SicP  ali model follow..  15  4.HQDIIANIGEKLGLP--LTFDDNNQCLLLLDSDIFTSIE-AKDDIWLLNGMIIPLSPV-CGDSIWRQIMVINGELAANNEGTLAYIDAAETLLLHAITDLTNTYHIISQLESFVNQQEALKNILQEYAK... 129
7 -39.1001xkp_C mol:protein length:143 Chaperone protein yscB  ali model follow..  18  1.MQNLLKNLAASLGRK-PFVADKQGVYRLTIDKHLVML--APHGSELVLRTPIDAPEGNNVNVTLLRSLMQQALAWAKRYPQTLVLDDCGQLVLERLRLQELDTHGLQEVINKQLALLEHLIPQLTPFSVASR 133
8 -38.4004g6t_A mol:protein length:128 Type III chaperone protein ShcA  ali model follow..  17  9.YKTLLDDFSRSLEMQ-PLVFDDHGTCNMIIDNTFALTLSCYARERLLLIGLLEPHK-----DIPQQCLLAGALNPLLNAGPGLGLDEKSGLYHASIPREKLSVPTLKREMAGLLEWMRGWREA......... 128
9 -38.0002bho_A mol:protein length:130 CHAPERONE PROTEIN SYCT  ali model follow..  11  5.FTELMQQLFLKLGLNHQV--NENDVYTFEVDGHIQVLIACYHQQWVQLFSELGA-----------DLPTNDNLFGEHWPAHVQGRLDGKPILWSQQSLVGLDIDEMQAWLERFIDDIEQRKEPQNTKFQPNS 123
10 -37.2001n5b_A mol:protein length:132 YOPE regulator  ali model follow..  11  4.FEQAITQLFQQLSLS--IPDTIEPVIGVKVGE-FACHITEHPVGQILMFTLPSLDNNN-----EKETLLSHNIFSQDILKPILSWDEVGGHPVLRQPLNNLDNNSLYTQLEMLVQGAERLQTSSLISPPRSF 129
11 -37.0003kxy_A mol:protein length:133 Exoenzyme S synthesis protein C  ali model follow..  17  7.VNRLLAEFAGRIGLP-SLSLDEEGMASLLFDEQVGVTLLLAERERLLLEADVVGIDVL--GEGIFRQLASFNRHW-HRFDLHFGFDELTGKVQLQILAAQLTLECFEATLANLLDHAEFWQRLLPCAS.... 133
12 -36.5001s28_A mol:protein length:132 ORF1  ali model follow..  16  7.FDRLIDGLAKDYGMPGFPEKKHEHEVYCFEFKEVSIRIYQDKFKWVYFLSDIGVIDNL--DSNACQSLLRLNEFNLRTPFFTVGLNEKKDGVVHRIPLLNLDNVEMRRVFEALLNLSGEVKKTFG....... 130
13 -36.5001k6z_A mol:protein length:141 Type III secretion chaperone SycE  ali model follow..  11  9.FEQAITQLFQQLSLS--IPDTIEPVIGVKVGE-FACHITEHPVGQILMFTLPSLDNND-----EKETLLSHNIFSQDILKPILSWDEVGGHPVLRQPLNSLDNNSLYTQLEMLVQGAERLQTSSLISPPRSF 134
14 -35.6002bsj_A mol:protein length:133 CHAPERONE PROTEIN SYCT  ali model follow..  11  8.FTELMQQLFLKLGLNH--QVNENDVYTFEVDGHIQVLIACYHQQWVQLFSELGADL-----------PTNDNLFGEHWPAHVQGRLDGKSILWSQQSLVGLDIDEMQAWLERFIDDIEQRKEPQNTKFQPNS 126
15 -35.4001l2w_A mol:protein length:123 YopE regulator  ali model follow..  11  5.FEQAITQLFQQLSLS--IPDTIEPVIGVKVGE-FACHITEHPVGQILMFTLPSLDNND-----EKETLLSHNIFSQDILKPILSWDEVGGHPVLRQPLNSLDNNSLYTQLEMLVQGAERLQTS......... 121
16 -34.8004jmf_B mol:protein length:116 Probable chaperone  ali model follow..  15  5.YRAAIHQLFLALDLP--TPNDEESVLSLQVGP-HLCHLAEHPTDHLLMFTRLEGQG--------DATANEQNLFSQDPCKPILGRDPESGERLLRQPLQLLDRAQIHHQLEQLVAAAEELR........... 116
17 -23.3002plg_A mol:protein length:163 Tll0839 protein  ali model follow..  15  28.IETVISSLHQGDAPL-VGQTDSGKIWMFRYGSAFVQLSGHTEEDFLTIWSPVLPLPVA-DELALYRKLLTLNW--LTTFEAHFAIAEEQVQVVASRTLGGITAGEISRLITIVATLADDYDDALRA...... 151
18 -20.3001xkp_B mol:protein length:124 Chaperone protein sycN  ali model follow..  11  4.IEPIISHFCQDLGVPT--SSPLSPLIQLEMAQSGTLQLEQHGATLTLWLAR--SLAWHRCEDAMVKALTLTAAQKSGALPLRAGWLGESQLVLVSLDERSLTLPLLHQAFEQLLRLQQEVLA.......... 122
19 -14.7001k3s_A mol:protein length:113 SigE  ali model follow..  14  1.MESLLNRLYDALGLDAP-----EDEPLLIIDDGIQVYFN-ESDHTLEMCCPFMPLPDDILT---LQHFLRLNY----TSAVTIGADADNTALVALYRLPQTSTEEALTGFELFISNVKQLKEHYA....... 113
20 -13.4002fm8_A mol:protein length:135 Surface presentation of antigens protein spaK  ali model follow..  18  6.IAELVRSALEVSGCDPSLGIDSHSTIVLDLFALPSICISVK-DDDVWIWAQLGADSMVVLQQRAYEILMTIMEGCHFARGGQLLLGEQNGELTLKALVHP-DGEKFSTALNGFYNYLEVFSRSLMR...... 135
21 -12.7001ry9_A mol:protein length:145 Surface presentation of antigens protein spaK  ali model follow..  12  12.LVQLVRDSLFTIGCPPSIDLDSHSAITISLDSMPAINIALV-NEQVMLWANFDAPSDVKLQSSAYNILNLMLMNFSYSINELVELHRSDEYLQLRVVIKD-DGIVFAEILHEFYQRMEILNGVL........ 139
22 -11.1002xga_A mol:protein length:153 SURFACE PRESENTATION OF ANTIGENS PROTEIN SPAK  ali model follow..  12  20.LVQLVRDSLFTIGCPPSIDLDSHSAITISLDSMPAINIALV-NEQVMLWANFDAPSDVKLQSSAYNILNLMLMNFSYSINELVELHRSDEYLQLRVVIKD-DGIVFAEILHEFYQRMEILNGVL........ 147
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;