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Query: IDP90920 gene: glyQ; glycyl-tRNA synthetase subunit alpha [Vibrio cholerae O1 biovar eltor str. N16961] VC0021 [Vibrio cholerae O1 biovar El Tor str. N16961], from CSGID

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSGNIWVYFSVIFYQFRQKNRANLTMQKYDIKTFQGMILALQDYWAQQGCTIVQPLDMEVGAGTSHPMTCLRALGPEPIATAYVQPSRRPTDGRYGENPNRLQHYYQFQVIIKPSPDNIQELYLGSLRVLGVDPCVHDIRFVEDNWENPTLGAWGLGWEVWLNGMEVTQFTYFQQVGGLECKPVTGEITYGIERLAMYIQGVDSVYDLVWTDGPLGKVTYGDIFHQNEVEQSTYNFEHADVDFLFTYFDQCEKECKYLLELEKPLPLPAYERILKAAHAFNLLDARKAISVTERQRYILRIRNLTKSVAEAYYASREALGFPMCKKSEQKLast
1 -115.0001j5w_A mol:protein length:298 Glycyl-tRNA synthetase alpha chain  ali model follow..  58  2..........................GSDKIMYLQDVIMKLNDFWASKGCLLEQPYDMEVGAGTFHPATFFGSLRKGPWKVAYVQPSRRPTDGRYGENPNRLQRYFQYQVIIKPSPENSQELYLESLEYLGINLKEHDIRFVEDNWESPTLGAWGVGWEVWLDGMEITQFTYFQQIGGISLKDIPLEITYGLERIAMYLQGVDNVYEVQWNENV----KYGDVFLENEREFSVFNFEEANVGLLFRHFDEYEKEFYRLV--EKNLYLPAYDYILKCSHTFNLLDARGAISVSQRQTYVKRIQAMARKAARVFLEVQANENSP........ 291
2 -114.0003rf1_A mol:protein length:311 Glycyl-tRNA synthetase alpha subunit  ali model follow..  62  11.......................NLYFQSNAMTFSQMILNLQNYWQEQGCAIMQPYDMPAGAGTFHPATFLRSLGKKPWAAAYVAPSRRPTDGRYGENPNRLGAYYQFQVLIKPSPDNIQELYLKSLENLGFDLKSHDIRFVEDNWESPSLGAWGLGWEVWLDGMEVTQFTYFQQVGGIAVDLVSAEITYGLERIAMYLQNVDNVYDIVWSEFNGEKIKYADVHKQSEYEFSKYNFEVSDVKILNEQFENSYKECKNIL--EQGLALPAYDYCMLAAHTFNLLDARGAISVAQRQDYMLKIRELSKNCAEIYKKNLNEAE.......... 305
3 -109.0005f5w_A mol:protein length:299 Glycine--tRNA ligase alpha subunit  ali model follow..  59  2........................ENLYFQSMYFQDIIMTLHKFWAEKGCLIWQPYDVEVGAGTMNPATFLKVLGKKPWNVAYVEPSRRPQDGRYGENPNRLQHYYQFQVILKPAPRNPQEIYLESLERLGINPLEHDIRFVEDDWESPTLGAWGLGWEVWLDGMEITQFTYFQQAGGLDLDEISVEITYGLERIAMYIQDKDSVFDIEWKEGI----TYGEIFKRSEWEWSKYNFELADTDMLFQVYEMFEKESKRMV--EEGLIFPAYDYLLKCSHVFNILDARGAISVQERARYIRRMNNLAREIAKLYLQVFENVG.......... 291
4 -62.6002zze_A mol:protein length:752 Alanyl-tRNA synthetase  ali model follow..  18  24.GKPFWTLDPDRETCGDPYQFIGK-PGIPRKYTLDEMREKFLRFFEKHPHGRVKRYPVLPRWRDFQPWVISGEADPPANPLVISQPSIRFTDIDNVGITGRMMAHHAFNYPGKPIYWMDETVLAFEFFTKELKMKPEDITFKENPWAGG--GNAGPAFEVLYRGLEVATLVFMQYKKAIPMETKVVDTGYGLERLVWMSQGTPTAYDAVLGYVVEPLKKMAGIEKIDEKILMENSFDIEDLGDLRYLREQVAKRVGITVEELEKAIRPLIYAIADHTKALTFMLADGVVPSNVKAGYLARIRKSIRHLRELGLEKELHKTFPEFKEMEDI 411
5 -57.2003hxu_A mol:protein length:441 Alanyl-tRNA synthetase  ali model follow..  14  1..............................SKSTAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTFLGLDKRNYSRATTSQRCVRANDLENVGYTARMLGNFSFGDYFKLDAILFAWLLLTSEKWFALPKERLWVTVSDNFWQMGDTGPCGPCTEIFYD-IEIWNIVFMQFNRQEPLPKPSVDTGMGLERIAAVLQHVNSNYDIDFRTLIQAVAKVTGATDLSNK---------------------------------------SLRVIADHIRSCAFLIADGVMPSNENRGYVLRIRRAVRHGNMLGAKE............... 327
6 -54.9001riq_A mol:protein length:465 Alanyl-tRNA synthetase  ali model follow..  11  2..............................SLSAHEIRELFLSFFEKKGHTRVKSAPLVPENDPTLLFVFLGLEKRPYKRATSCQKCLRVNDLEQVGYTSRMLGNFSFGDYFK----KEAIEYAWEFVTEVLKLPKEKLYVEDNFWQMGDVGPCGPSSEIYVD-LEIWNLVFMQYNRDTPLPHPNIDTGMGLERIASVLQGKNSNFEIDIFPLIQFGEEVSGKKYGEKFETDV-----------------------------------ALRVIADHLRAITFAISDGVIPSNEGRGYVIRLRRAMRFGYKLGIEN............... 314
7 -52.9004xem_A mol:protein length:475 Alanine--tRNA ligase, cytoplasmic  ali model follow..  12  4................SSSGLVPRGSHMDSTLTASEIRQRFIDFFKRNEHTYVHSSATIPLDDPTLLFAFLNTIDPSHSRAANTQKCIRANDLDDVGTFFEMLGSWSFGDYFK----ELACKMALELLTQEFGIPIERLYVKDNFWEMGDTGPCGPCSEIHYD-LEIWNLVFIQYNREKPLPKKSIDTGMGLERLVSVLQNKMSNYDTDFVPYFEAIQKGTGARPYT----------------------------GKVGAEDADGIDMAYRVLADHARTITVALADGGRPDNTGRGYVLRLRRAVRYAHEK-LNASRGFFATLVDVVVQS 370
8 -47.4003wqy_A mol:protein length:906 Alanine--tRNA ligase  ali model follow..  12  27.GKHFWTADPEREICGDPYSFIGN-PVFKKPFELDEMREYYLNFFERRGHGRIERYPVVASIADFQPFVTSGVAPPPANPLTISQPCIRLDDLDSVGRTGRMMAHHAFNYPGKEIYWKNETVAYCTELLNELGVKKEDIVYKEEPWAGG--GNAGPCLEAIVGGLEVATLVFMNLEEHRKMDNYIVDTGYGLERFVWASKGTPTVYDAIFPEVVDTIIDNSNVSFNREDERVR-IMGELRGERLNQLRKSVADTVGVSVEELEGIVVPKVYSLADHTRCILFMLGDGLVPSNAGAGYLARIRRSLRLAEELELGKILGFEFDVPLSTVQE 410
9 -9.7405k1p_A mol:protein length:274 Pyrrolysine--tRNA ligase  ali model follow..  9  58..................................GKLEREITRFFVDRGFLEIKSPILIPAPNLYNYLRKLDRALPDPIKIFEIGPCYRKESDG----KEHLEEFTMLAQMGSGCTRENLESIITDFL-NHLGIDFKIVG--------DSCMVYGDTLDVMHGDLELSSAVVGPLDREWGIDKPWIGAGFGLERLLKVKHDFKNIKRA.......................................................................................................................... 254
10 -8.9504tqd_A mol:protein length:291 Pyrrolysine--tRNA ligase  ali model follow..  11  75..................................GKLEREITRFFVDRGFLEIKSPILIPAPNLYNYLRKLDRALPDPIKIFEIGPCYRKESDG----KEHLEEFTMLSFIQGCTRENLESIITDFLNHLGI----------DFKIVGDSCMVYGDTLDVMHGDLELSSAVVGPLDREWGIDKPWIGAGFGLERLLKVKHDFKNIKRA.......................................................................................................................... 271
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 1 0 5   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;