current user: public
If you have questions about the server, please let us know.

Query: IDP91310 putative translocator protein PopB [Vibrio parahaemolyticus RIMD 2210633] VP1657 [Vibrio parahaemolyticus RIMD 2210633], from CSGID

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    .  260    .  270    .  280    .  290    .  300    .  310    .  320    .  330    .  340    .  350    .  360    .  370    .  380    .  390    .
# Score Template Links and tools%idFirst MSSIALDRTQTQVYIPESGQTTLENVQKTASTATPSVTVENVKSRDADTLNTGRVKVQLDAPNAAVSDKVTDLTLKAMAQLQKIVDTIAKALHAVADQTGSIAVKIIAGSADDFEVELAAITDKLKSAQNELKIQEVKVAKAKHEQEMAENQEKIKESEAAAKEAQKSGLAAKIFGWISAVVSIVVGAIMVATGVGAAAGALMIAGGVMGAVSMALQEPAVQDALKEAGVNVDVLNKVVMALEIAVAVIGAIVTFGGAAAGGIAKLAAKSASKIAQKVTDIATKAAANMAKVADMGSKAATTTAKAIRYGAETVDLTVNIGKGATDSVHAANNANVTEIQADITDLRAKMTLSQAVIDKLKEEIGKLMEDFQELMSIIMQMIQAKSETMQTVLSRPATVLast
1 -61.1003wxx_B mol:protein length:219 AopB  ali model follow..  37  1.....................................................GQGVVLPQPMPGIGQQMSPPKQQELDQLRKTAQLGTANAAKLLGSS-TLLNKLAFASPEEFEIELSKMTSELEQTQKKLKLADLERIRAENLKKIDENQTKMKEASEAADKAKKSGLASKIFGWISAIASMVIGAILIATGVGAAVGAMMIVGGAVGVANMAIQQ-AAADGRISPET-MKVLGPIMIAAEILVAIVSIAVTFGASAASTAMK-AVKFATQAAD........................................................................................................................... 219
2 -6.1805vk6_C mol:protein length:96 pH-gated potassium channel KcsA  ali model follow..  15  25.............................................................................................................................................................AERGAPGAQLITYPRALWWSVATATTVGYGDLYPVTLWGRCVAVVVMVAGIT.............................................................................................................................................................................................. 76
3 -6.1506by3_C mol:protein length:96 pH-gated potassium channel KcsA  ali model follow..  15  25.............................................................................................................................................................AERGAPGAQLITYPRALWWSVETATAVGYGDLYPVTLWGRCVAVVVMVAGIT.............................................................................................................................................................................................. 76
4 -6.0905vke_C mol:protein length:96 pH-gated potassium channel KcsA  ali model follow..  15  25.............................................................................................................................................................AERGAPGAQLITYPRALWWSVETATTVGYGDLAPVTLWGRCVAVVVMVAGIT.............................................................................................................................................................................................. 76
5 -6.0404pho_A mol:protein length:302 Hemolysin E, chromosomal  ali model follow..  10  8.............................................................................................................TVEVVKNAIETADGALDLYNKYLDIKELSRFKQEYSQAASVLVGDIKTLLMDSQDKYFEAT-QTVYEWAGVATQL------------------------LAAYILLFDEYNEKKASAQKDILIKVLDDGITKLNEAQKSLLVSSQSFNNASGKLLALDSQLTNDFSEKSSYFQSQVDKIRKEAYAGAAAG--------------------VVAGPFGLIISYSIAAGVVEGKLIPELKNKLKSVQNFFTTLSNTVKQA----NKDIDAAKLKLTTEIAAIGEIKTE.... 255
6 -5.9902k1e_A mol:protein length:103 water soluble analogue of potassium channel, KcsA  ali model follow..  16  26..........................................................................................................................................................AVEAERGAPGAALISYPDAIWWSVETATTVGYGDRYPVTEEGRKVAEQVMKAGIE.............................................................................................................................................................................................. 80
7 -5.9105vkh_C mol:protein length:103 pH-gated potassium channel KcsA  ali model follow..  15  29.............................................................................................................................................................AERGAPGAQLITYPRALWWSVETATTVGYGDLAPVTLWGRCVAVVVMVAGIT.............................................................................................................................................................................................. 80
8 -5.8802wcd_A mol:protein length:309 HEMOLYSIN E, CHROMOSOMAL  ali model follow..  8  9.............................................................................................................TVEVVKNAIETADGALDLYNKYLDIKELSRFKQEYSQAASVLVGDIKTLLMDSQDKYFEAT-QTVYEWCGVATQLLAAYILLFDEYNEKK-----------SAQKDILIKVLDDGITKLNEAQKSLLVSSQSFNNASGKLLALDDFSEKSSYFQSQVDKIRKEAYAGAAAGVVAGPFGLIISYSIAAGVVEGKLIPELKNKLKSVQNFFTTLSNTVKQANKDIDAAKLKLTTEIGEIKTETETTRFYVDYDDLMLSLLKEAAKKMINTCNEYQKRHGK--KTLFEVPEV. 303
9 -5.8503f5w_C mol:protein length:104 Voltage-gated potassium channel  ali model follow..  15  30.............................................................................................................................................................AERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGIT.............................................................................................................................................................................................. 81
10 -5.7102j0f_A mol:protein length:482 THYMIDINE PHOSPHORYLASE  ali model follow..  12  22..................................................................GSQGLPDPSPEPKQLPELIRMKRDGGRLSEADIRGFVAAVVNGSAQGAQIGAMLMAIRLRGMDLE-ETSVLTQALAQSGQQLEWPEAWRQQLVDKHSTGGVGDKVSLVLAPALAACGCKVPMI--GRGLGHTGGTLDKLESIPGFNVIQSPEQMQVLLDQAGCCIVGQSEQLVPADGILYAARDVTATVDSLPLITASILSKKLVEGLSALVVDVKFGAGAVFPNQEQARELAKTLVGVGASLGLRVAAALTAMDK-VEEALLCMDGAGPPDLRDLVTTLGGALLWLSGHAGTQAQGAARVAAALDDALGRFERMLAAQG............. 351
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 9 3 8   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;