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Query: IDP91676 DNJA3_HUMAN [Homo sapiens], from CSGID

Results of FFAS03 search in PDB1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MAARCSTRWLLVVVGTPRLPAISGRGARPPREGVVGAWLSRKLSVPAFASSLTSCGPRALLTLRPGVSLTGTKHNPFICTASFHTSAPLAKEDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRKQYDAYGSAGFDPGASGSQHSYWKGGPTVDPEELFRKIFGEFSSSSFGDFQTVFDQPQEYFMELTFNQAAKGVNKEFTVNIMDTCERCNGKGNEPGTKVQHCHYCGGSGMETINTGPFVMRSTCRRCGGRGSIIISPCVVCRGAGQAKQKKRVMIPVPAGVEDGQTVRMPVGKREIFITFRVQKSPVFRRDGADIHSDLFISIAQALLGGTARAQGLYETINVTIPPGTQTDQKIRMGGKGIPRINSYGYGDHYIHIKIRVPKRLTSRQQSLILSYAEDETDVEGTVNGVTLTSSGGSTMDSSAGSKARREAGEDEEGFLSKLKKMFTSLast
1 -80.4003lz8_A mol:protein length:329 Putative chaperone DnaJ  ali model follow..  27  10...............................................................................ENLYFQSNAMELKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKEN-DAEAKFKDLAEAWEVLKDEQRRAEYDQLWQHRNDPGFGRQRQTHEQSYSQQDFDDIFSSMFGQQAHQR-RRQHAARGHDLEIEVAVFLEETLAEQTRTISYNL-------------------------------------------------------PVYNVFGMIESETPKTLNVKIPAGVVDGQRIRLKGQGGDLWLVIHIAPHPLFDIVGHNLEIVLPLAPWEAALGAKVTVPTLKESILLTVPPGSQAGQRLRIKGKGLV--SKTHTGDLFAVIKIVMPTKPDEKARELWQQLAAAEASFDPRKT......................................... 319
2 -71.6004j80_A mol:protein length:284 Chaperone protein DnaJ 2  ali model follow..  36  1.......................................................................................MAAKKDYYAILGVPRNATQEEIKRAYKRLARQYHPDVNK-SPEAEEKFKEINEAYAVMSDPEKRRIYDTYGTTEAPPPPPPGGYD-FSGFDVEDFSEFFQELFGP--------GLFGKGRDLRAELPLTLEEAFHGGERVVEVA---------------------------------------------------------------------GRRVSVRMPPGVREGSVIRVPGMGGDLLLVVRMLPHPVFRLEGQDLYATLDVPAPIAVVGGKVRAMTLEGPVEVAVPPRTQAGRKMRLKGGGFP--GPAGRGDLYLEVRITIPERLTPEEEALWKKLAEAYYARA............................................. 273
3 -62.2001nlt_A mol:protein length:248 Mitochondrial protein import protein MAS5  ali model follow..  22  1...................................................................................................................................................................................................GAQRPRGPQRGKDIKHEISASLEELYKGRTAKLALNKQILCKECEGRGGKKGA-VKKCTSCNGQGIKFVTRMIQRFQTECDVCHGTGDIIKDRCKSCNGKKVENERKILEVHVEPGMKDGQRIVFKGEAGDVVFIVSERPHKSFKRDGDDLVYEAEIDLLTAIAGGEFALEHVSGDLKVGIVPGIAPGMRKVIEGKGMPIPKYGGYGNLIIKFTIKDPENHFTSEENLKK....................................................... 246
4 -52.3005y88_T mol:protein length:283 Pre-mRNA-splicing factor CWC23  ali model follow..  12  7....................................................................................EDVINQRLNLYDVLELPTPLDVPQIKRKYRTLALKYHPDKHPDNPSIIHKFHLLSTATNILTNADVRPHYDRWLIEFLRKTNDIERN-----KLIQKLEESESSTIPTTTPHPDLLQIQRHGELLRKHFNLPYGDWKHLNTQDQENASQHPYYDCSTLRIV---------------------------------------LDNFLQSNNKSN-CLSHLRNQVFITLSANEIYDIYFSERNNYTVFDTPITAQHVFRNWSSGN-------LIPTVKDISPLIPLHYYDFNLETELNDDIARLVS............................................................................................. 276
5 -49.3005nro_B mol:protein length:108 Chaperone protein DnaJ  ali model follow..  46  1........................................................................................MAKQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAAFEQGGMGGGGFGGGADFSDIFGDVFGDIFGGGSSH............................................................................................................................................................................................................................................................................................ 108
6 -48.9001xbl_A mol:protein length:107 DNAJ  ali model follow..  44  1.........................................................................................AKQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAAFEQGGMGGGGFGGGADFSDIFGDVFGDIFGGGRGR............................................................................................................................................................................................................................................................................................ 107
7 -48.8003apq_A mol:protein length:210 DnaJ homolog subfamily C member 10  ali model follow..  26  2...........................................................................................QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGLEDNQGGQYESWSYYRYDFGIYDDDPEIITLERREFDAAVNSSPGCSHCHDLAPTWREFAKEVDGLLRIGAVDDRMLCRMKGVN--SYPSLFIFRSGMAAVKYN....................................................................................................................................................................................................................... 185
8 -48.2004j7z_A mol:protein length:113 Chaperone protein DnaJ 2  ali model follow..  48  1........................................................................................AAKKDYYAILGVPRNATQEEIKRAYKRLARQYHPDVNK-SPEAEEKFKEINEAYAVLSDPEKRRIYDTYGTTEAPPPPPPGGYD-FSGFDVEDFSEFFQELFGPGLFGGFGRRS...................................................................................................................................................................................................................................................................................... 112
9 -45.8002ctw_A mol:protein length:109 DnaJ homolog subfamily C member 5  ali model follow..  35  9...................................................................................QRSLSTSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRNIYDKYGSLGLYVAEQFG---------EENVNTYFVSGPSSG............................................................................................................................................................................................................................................................................................... 109
10 -44.8002yua_A mol:protein length:99 Williams-Beuren syndrome chromosome region 18 protein  ali model follow..  32  5...............................................................................SSGSQGDCSYSRTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRKYDRGLLSDEDLRGPGSGPSSG.................................................................................................................................................................................................................................................................................................................. 99
11 -44.6002n04_A mol:protein length:105 DnaJ homolog subfamily C member 5  ali model follow..  38  11...................................................................................QRSLSTSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRNIYDKYGSLGLYVAEQFGEE---------NVNTYF...................................................................................................................................................................................................................................................................................................... 104
12 -44.3002ctq_A mol:protein length:112 DnaJ homolog subfamily C member 12  ali model follow..  22  2.........................................................................SSGSSGMDAILNYRSEDTEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRARYDHWRRSQMSMPFQQ----------WEALNDSVKTSGPSSG.............................................................................................................................................................................................................................................................................................. 112
13 -44.2002ctt_A mol:protein length:104 DnaJ homolog subfamily A member 3  ali model follow..  88  1.............................................................................................................................................................................................................GSSGSSGMELTFNQAAKGVNKEFTVNIMDTCERCNGKGNEPGTKVQHCHYCGGSGMETINTGPFVMRSTCRRCGGRGSIIISPCVVCRGAGQAKQKKR--SGPSSG......................................................................................................................................................................... 104
14 -44.0002q2g_A mol:protein length:180 Heat shock 40 kDa protein, putative (fragment)  ali model follow..  18  1.................................................................................................................................................................................................................................................................GAPRSHEVP---LLVTLEELYLGKRKKIKVTRKRFIEHKVRNEENIVEVEIKPGWKDGTKLTYSGEGGDLVLIIQTKTHPRFTRDDCHLIMKVTIPLVRALTGFTCPVTTLDNRLQIPIKEIVNPKTRKIVPNEGMPIKNQPGKGDLILEFDICFPKSLTPEQKKLIKEALD................................................... 180
15 -43.7002dn9_A mol:protein length:79 DnaJ homolog subfamily A member 3  ali model follow..  84  1.....................................................................................GSSGSSGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRKQYDAYGSGPSSG............................................................................................................................................................................................................................................................................................................................ 79
16 -43.4002ctr_A mol:protein length:88 DnaJ homolog subfamily B member 9  ali model follow..  48  1.....................................................................................GSSGSSGSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNK-SPDAEAKFREIAEAYETLSDANRRKEYDTLGHSAFTSGKGQSGPSSG.................................................................................................................................................................................................................................................................................................................. 88
17 -43.0002lgw_A mol:protein length:99 DnaJ homolog subfamily B member 2  ali model follow..  43  2...........................................................................................ASYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEAEKKFKEVAEAYEVLSDKHKREIYDRYGREGLTGTGTGPSR-----AEAGSGGPGLE..................................................................................................................................................................................................................................................................................................... 93
18 -42.7002dmx_A mol:protein length:92 DnaJ homolog subfamily B member 8  ali model follow..  43  2....................................................................................SSGSSGMANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNEEAEKKFKLVSEAYEVLSDSKKRSLYDRAGCDSWRAGGGASGPSSG.................................................................................................................................................................................................................................................................................................................. 92
19 -42.6002cug_A mol:protein length:88 mKIAA0962 protein  ali model follow..  47  5...............................................................................SSGILQSLSALDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNK-DPGAEDRFIQISKAYEILSNEEKRTNYDHYGSGPSSG............................................................................................................................................................................................................................................................................................................................ 88
20 -41.2003agz_A mol:protein length:190 DnaJ homolog subfamily B member 1  ali model follow..  18  1................................................................................................................................................................................................................................................................SAQEPARKKQDP-LRVSLEEIYSGCTKKMKHKRLNPDGKSIRNEDKILTIEVKKGWKEGTKITFPKEGADIVFVLKDKPHNIFKRDGSDVIYPARISLREALCGCTVNVPTLDGRIPVVFKDVIRPGMRRKVPGEGLPLPKTPERGDLIIEFEVIFPERIPQTSRTVLEQVLPI.................................................. 190
21 -41.1004rwu_A mol:protein length:92 Protein SIS1  ali model follow..  35  1....................................................................................SNAMVKETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGD---TEKFKEISEAFEILNDPQKREIYDQYGLEAARSGGPSFGPGGPGGAGG............................................................................................................................................................................................................................................................................................................. 92
22 -41.1002qsa_A mol:protein length:109 DnaJ homolog dnj-2  ali model follow..  30  1.............................................................................SNAVGFAPELYCGLENCYDVLEVNREEDKQKLAKAYRALARKHHPDRVKNKEEAEERFRVIATAYETLKDDEAKTNYDYYLDHPDQRFYNYYQYYRLRAAPKVDL.......................................................................................................................................................................................................................................................................................................... 109
23 -40.8002ej7_A mol:protein length:82 HCG3 gene  ali model follow..  51  2....................................................................................SSGSSGMVDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEAERRFKQVAEAYEVLSDAKKRDIYDRYGSGPSSG............................................................................................................................................................................................................................................................................................................................ 82
24 -40.8002b26_A mol:protein length:173 SIS1 protein  ali model follow..  20  10................................................................................................................................................................................................................................................................................SLEDLFVGKKKSFKIGRKGPHGAS---EKTQIDIQLKPGWKAGTKITYKNQGKTLQFVIQEKSHPNFKRDGDDLIYTLPLSFKESLLGFSKTIQTIDGRLPLSRVQPVQPSQTSTYPGQGMPTPKNPSRGNLIVKYKVDYPISLNDAQKRAIDEN..................................................... 172
25 -40.6002ctp_A mol:protein length:78 DnaJ homolog subfamily B member 12  ali model follow..  48  1.....................................................................................GSSGSSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNH-APGATEAFKAIGTAYAVLSNPEKRKQYDQFGSGPSSG............................................................................................................................................................................................................................................................................................................................ 78
26 -40.4001hdj_A mol:protein length:77 HUMAN HSP40  ali model follow..  51  1.........................................................................................MGKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNK-EPGAEEKFKEIAEAYDVLSDPRKREIFDRYGEEGLKGSGC......................................................................................................................................................................................................................................................................................................................... 77
27 -40.0001wjz_A mol:protein length:94 1700030A21Rik protein  ali model follow..  30  9....................................................................................ALEQTLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADEECMQKFIEIDQAWKILGNEETKKKYDLQRSGPSSG............................................................................................................................................................................................................................................................................................................................ 94
28 -40.0003ucs_C mol:protein length:74 Curved DNA-binding protein  ali model follow..  47  2........................................................................................SELKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSK-EPDAEARFKEVAEAWEVLSDEQRRAEYDQMWQH................................................................................................................................................................................................................................................................................................................................ 72
29 -39.7005vso_A mol:protein length:75 Yeast dnaJ protein 1  ali model follow..  47  2...................................................................................EFGSMVKETKFYDILGVPVTATDVEIKKAYRKCALKYHPDKNPSE-EAAEKFKEASAAYEILSDPEKRDIYDQFG.................................................................................................................................................................................................................................................................................................................................. 75
30 -39.6002l6l_A mol:protein length:155 DnaJ homolog subfamily C member 24  ali model follow..  19  3....................................................................................AVEQMPKKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDEECVQKFIEIDQAWKILGNEETKREYDLQRCEDDLRNVGPVDAQEEMSWNEGDHSFYLSCRCGGKY-----------------------------SKDEAEEVSLISCDTCS................................................................................................................................................................................................................................................ 140
31 -39.1002och_A mol:protein length:73 Hypothetical protein dnj-12  ali model follow..  49  1....................................................................................SNAMVKETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKN---PDGAEQFKQISQAYEVLSDEKKRQIYDQGGEE................................................................................................................................................................................................................................................................................................................................ 73
32 -37.6002lo1_A mol:protein length:71 DnaJ homolog subfamily A member 1  ali model follow..  52  1......................................................................................GMVKETTYYDVLGVKPNATQEELKKAYRKLALKYHPDKNPNE---GEKFKQISQAYEVLSDAKKRELYDKGGEQ................................................................................................................................................................................................................................................................................................................................ 71
33 -36.5002m6y_A mol:protein length:77 DnaJ homolog subfamily A member 1  ali model follow..  53  2....................................................................................GSHMVKETTYYDVLGVKPNATQEELKKAYRKLALKYHPDKNPNE---GEKFKQISQAYEVLSDAKKRELYDK.................................................................................................................................................................................................................................................................................................................................... 70
34 -35.6001exk_A mol:protein length:79 DNAJ PROTEIN  ali model follow..  39  1..............................................................................................................................................................................................................................GVTKEIRIPTLEECDVCHGSGAKPGTQPQTCPTCHGSGQVQMRQGFFAVQQTCPHCQGRGTLIKDPCNKCHGHGRVERS................................................................................................................................................................................... 79
35 -35.1002ys8_A mol:protein length:90 Rab-related GTP-binding protein RabJ  ali model follow..  30  24........................................................................................RNSKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCV-APGSEDAFKAVVNARTALLKNIKSGPSS..................................................................................................................................................................................................................................................................................................................................... 89
36 -35.0003i38_A mol:protein length:109 Putative chaperone DnaJ  ali model follow..  27  2.............................................................................................................................................................................................................................................................................................................................................NAHPLFDIVGHNLEIVLPLAPWEAALGAKVTVPTLKESILLTVPPGSQAGQRLRIKGKGLV--SKTHTGDLFAVIKIVMPTKPDEKARELWQQLAAAEASFDPRKT......................................... 105
37 -34.5001gh6_A mol:protein length:114 Large T antigen  ali model follow..  20  1....................................................................................SHMREESLQLMDLLGLERSAWGNLMRKAYLKKCKEFHPDKGGD----EEKMKKMNTLYKKMEDGVKYAHQPDFGGFWDATEIPTYGTDEEQWWNAFNEENLFCSEEMPSSDDEAT......................................................................................................................................................................................................................................................................................... 114
38 -29.7001faf_A mol:protein length:79 LARGE T ANTIGEN  ali model follow..  20  6......................................................................................SRADKERLLELLKLPRQGDFGRMQQAYKQQSLLLHPDKGGS----HALMQELNSLWGTFKTEVYNLRMNLGGTG................................................................................................................................................................................................................................................................................................................................ 77
39 -29.3002pf4_E mol:protein length:174 Small T antigen  ali model follow..  18  3...................................................................................KVLNREESLQLMDLLGLERSAWGNLMRKAYLKKCKEFHPDKG----GDEEKMKKMNTLYKKMEDGVKYAHQPDFGGFWDATEVFASSLNP-------GVDAIYCKQWPECVKKMSTNCI--------LCLLRMKHENRKLYRKDPLVWVDCYCFDC................................................................................................................................................................................................................................................. 143
40 -29.1006ekb_A mol:protein length:81 DnaJ/Hsp40 cysteine-rich domain superfamily protein  ali model follow..  27  1...........................................................................................................................................................................................................................MAANNNPQGTKPNSLVCANCEGEGCV------ACSQCKGGGVNLIDHGQFKAGALCWLCRGKKEVL---CGDCNGAGFIGGFLSTFDE............................................................................................................................................................................. 81
41 -28.6001iur_A mol:protein length:88 KIAA0730 protein  ali model follow..  20  3....................................................................................VPRGSILKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDANEVFKHLQNEINRL---EKQAFLDQNADRASRRT........................................................................................................................................................................................................................................................................................................................... 81
42 -22.9004mo1_A mol:protein length:178 Antitermination protein Q  ali model follow..  13  12.........................................................................................................................................................................................MAAFCGKHELSQNDKQKAIMQFAHKVSGKYRGVAKLEGNTKAKVLQVLATFAYADYCRSA-ATPGARCRDCHGTGRAVDIAWGRVVEKECGRCKGVGYSRMPASAAYRAVTMLITQPTWSRTVKPLYDA...................................................................................................................................................................... 149
43 -22.7001xao_A mol:protein length:121 Mitochondrial protein import protein MAS5  ali model follow..  21  2..................................................................................................................................................................................................................................................................................................................................................FKRDGDDLVYEAEIDLLTAIAGGEFALEHVSGDLKVGIVPGIAPGMRKVIEGKGMPIPKYGGYGNLIIKFTIKFPENTSEENLKKLEEILPPRIVPAIPKKATVDE.................................... 112
44 -20.9002guz_A mol:protein length:71 Mitochondrial import inner membrane translocase subunit TIM14  ali model follow..  20  8.....................................................................................DPKMNSKEALQILNLTENLTKKKLKEVHRKIMLANHPDKG----GSPFLATKINEAKDFLEKRGISK........................................................................................................................................................................................................................................................................................................................................ 71
45 -19.3002bx9_A mol:protein length:53 TRYPTOPHAN RNA-BINDING ATTENUATOR PROTEIN-INHIBITORY PROTEIN  ali model follow..  17  1.......................................................................................................................................................................................................................................................................MVIATDDLEVACPKCERAGEIEGTPCPACSGKGVILTAQTLLDFIQKHLNK...................................................................................................................................................................... 53
46 -18.9001n4c_A mol:protein length:182 Auxilin  ali model follow..  23  116..........................................................................................GETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYAKMIFMELNDAWSEFENQGQKPLY...................................................................................................................................................................................................................................................................................................................................... 182
47 -18.6003uo2_A mol:protein length:175 J-type co-chaperone JAC1, mitochondrial  ali model follow..  13  2..........................................................................................TSTFYELFPKTFPKDQSRLRKEYRQLQAQHHPDMA---QQGSEQSSTLNQAYHTLKDPLRRSQYKLLRNIDLTQEQTSNEVTTSDPQLLLKVLDIHDEL--------SQMDDEAGVKLLEKQNKERIQDIEAQLGQCYNDKDYAAAVK.................................................................................................................................................................................................................................................. 147
48 -16.9002guz_B mol:protein length:65 Mitochondrial import inner membrane translocase subunit TIM16  ali model follow..  14  1........................................................................................MTLDESCKILNIEEDLNMDKINNRFNYLFEVNDKEKG----GSFYLQSKVYRAAERLKWELAQRE....................................................................................................................................................................................................................................................................................................................................... 64
49 -16.5003lcz_A mol:protein length:53 Inhibitor of TRAP, regulated by T-BOX (Trp) sequence RtpA  ali model follow..  19  1.......................................................................................................................................................................................................................................................................MVIATDDLETTCPNCNGSGREEPEPCPKCLGKGVILTAQGSTL-IKKHIHE...................................................................................................................................................................... 53
50 -14.6004it5_A mol:protein length:174 Co-chaperone protein HscB homolog  ali model follow..  21  1........................................................................................SNAMNYFELFGLPIELDGSLLSSQFRALQKRFHPDNFATASERDRLMAVINDAYQTLKDPLRRAEY...................................................................................................................................................................................................................................................................................................................................... 73
51 -14.6003uo3_A mol:protein length:181 J-type co-chaperone JAC1, mitochondrial  ali model follow..  29  9.........................................................................................FTSTFYELFPKTFTIDQSRLRKEYRQLQAQHHPDM----QQGSEQSSTLNQAYHTLKDPLRRSQY...................................................................................................................................................................................................................................................................................................................................... 77
52 -14.5001fpo_A mol:protein length:171 CHAPERONE PROTEIN HSCB  ali model follow..  22  2............................................................................................DYFTLFGLPAQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVINQAWQTLRHPLMRAEY...................................................................................................................................................................................................................................................................................................................................... 70
53 -13.6003bvo_A mol:protein length:207 Co-chaperone protein HscB, mitochondrial precursor  ali model follow..  24  41.........................................................................................PTRDYFSLMDCNRRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEVNDAYKTLLAPLSRGLY...................................................................................................................................................................................................................................................................................................................................... 112
54 -12.5002k3v_A mol:protein length:86 Tetraheme cytochrome c-type  ali model follow..  22  14..........................................................................................................................................................................................................................................GCENCHADGEPSKDGAEQCQSCHGSAEMDDNHKPHDGLLMCADCHEAKVGEKPTCDTCHDDGRTAK.................................................................................................................................................................................... 86
55 -12.2002ozy_A mol:protein length:163 Cytochrome c-type protein nrfB  ali model follow..  15  36..........................................................................................................................................................................................................................HGKHASVINPNNKLPVTCTNCHGQPSPVGEQNSVCMSCHLPEQLQKAHDVHVTKVACASCHSSDKGRIKICVDCHSDQRTNPNFNPA----VPLLKEQ.................................................................................................................................................................... 162
56 -12.0001gm4_A mol:protein length:107 CYTOCHROME C3  ali model follow..  10  18......................................................................................................................................................................................................................VMFPHAPHE----------VECVTCHHLVDGKESAKCGSSGCHDDLTAKKGEKSLLKHTSCLACHSKKDLTGCAKSKCH........................................................................................................................................................................................... 106
57 -11.9003cao_A mol:protein length:103 CYTOCHROME C3  ali model follow..  14  8...............................................................................................................................................................................................................PTDAFGKLERPAAVFNHDEHNEKAGIESCNACHHV-EDEDSVGTPCSDCHALEQDGDTPGL-AYHQQCWGCHEKQAKGPVMCGECHVK......................................................................................................................................................................................... 102
58 -11.9001i77_A mol:protein length:107 CYTOCHROME C3  ali model follow..  10  18......................................................................................................................................................................................................................VMFPHAVHA----------VECVTCHHQVDGKESAKCGSSGCHDDLAGKQGEKSLLKHTNCIGCHSK-DLTACAKSKCH........................................................................................................................................................................................... 106
59 -11.8001m1p_A mol:protein length:91 Small tetraheme cytochrome c  ali model follow..  20  14..........................................................................................................................................................................................................................................GCESCHKDGTPSADGAAQCQSCHGKSEMDAVHKPHDGNLVCADCHDMNVGQKPTCESCHDDGRTS..................................................................................................................................................................................... 85
60 -11.8003cyr_A mol:protein length:107 CYTOCHROME C3  ali model follow..  10  1..................................................................................................................................................................................................................APAVPNKPVEVKGSQKTVMFPHAPECVTCHHLVDGKESAKCGSSGCHDDLTAKKGEKSLLKHTSCLACHSKKDLTGCAKSKCH........................................................................................................................................................................................... 106
61 -11.5001qn0_A mol:protein length:112 CYTOCHROME C3  ali model follow..  12  13..........................................................................................................................................................................................................................IAGGEKNLTVVFNHSTKCDDCHHQPGDKQYAGCTTDGCHNILDKADKS---GAKPTCISCHKD-KLTGCKGSACHPS......................................................................................................................................................................................... 112
62 -11.4001gyo_A mol:protein length:109 CYTOCHROME C3, A DIMERIC CLASS III C-TYPE CYTOCHROME  ali model follow..  13  6.................................................................................................................................................................................................................KVVITAPEGEDPHPRFGKVEMSHAKSCVSCHHM-FDGCGDFQKCADCHIDRDDRSYERGFYKAISCRGCHKAMKAKNEQLQGCHEAAQ....................................................................................................................................................................................... 108
63 -11.10019hc_A mol:protein length:292 PROTEIN (NINE-HAEM CYTOCHROME C)  ali model follow..  15  220......................................................................................................................................................................................................................................KPEILCATCHHR-SPLSLTPPKCGSCHTKEIDAADPGR-AYHLECMGCHKGARPRDTDCTTCHKA......................................................................................................................................................................................... 290
64 -11.1002a3m_A mol:protein length:130 COG3005: Nitrate/TMAO reductases, membrane-bound tetraheme cytochrome c subunit  ali model follow..  11  40......................................................................................................................................................................................................................VIFNH---------SSHSSYQCADCHHPVDGKENAKCATAGCHDVFDKKDKS---TTVATCMSCHLEAAGSDKDKSKCH........................................................................................................................................................................................... 129
65 -10.8006f0k_A mol:protein length:211 Cytochrome c family protein  ali model follow..  12  46......................................................................................................................................................................................................................PPYSHRIHVGKLGLD------CRYCHNWVEVSDKPTQTCINCHSQILTDSPR-HVNNGVGCETCHGREPLSMGWCLECHRQPELYLRPQSEIT............................................................................................................................................................................. 177
66 -10.7001ofw_A mol:protein length:296 NINE-HEME CYTOCHROME C  ali model follow..  15  220......................................................................................................................................................................................................................................KPEILCATCHHR-SPLSLTPPKCGSCHTKEIDKANPGR-AYHLQCMGCHKGARPRDTDCTTCHKAAPKSAD................................................................................................................................................................................... 296
67 -10.5001duw_A mol:protein length:292 NONAHEME CYTOCHROME C  ali model follow..  16  220......................................................................................................................................................................................................................................KPETLCATCH-HRSPLSATPPKCGSCHTKEIDPANPNR-AYHLQCMGCHQGGRPKNTDCTTCHKA-------------P........................................................................................................................................................................... 292
68 -10.5002lli_A mol:protein length:124 Protein AIR2  ali model follow..  18  2......................................................................................................................................................................................................................................EAAPKCNNCSQRGSRHCPKAIQCSKCDEVGHYRSQCPHKWKKVQCTLCKSKKHSKER-CYNCGGKGHFGDD................................................................................................................................................................................... 120
69 -10.3002bq4_A mol:protein length:116 BASIC CYTOCHROME C3  ali model follow..  13  22.....................................................................................................................................................................................................................KVKFSHKAHASLGTDAAA----CQKCHHKWDGKSEGGCATEGCHADTTSFKAT---KSPMSCQGCHKEMKTAKKTCAQCHNQ......................................................................................................................................................................................... 115
70 -10.3001aqe_A mol:protein length:111 CYTOCHROME C3  ali model follow..  11  31....................................................................................................................................................................................................................................ASHMDIACQQCHHTPDTYTIESCMTEGCHDNIKERTEISS-DSEKSCVGCHRELKR-PLACNSCHVQ......................................................................................................................................................................................... 111
71 -10.2001bvb_A mol:protein length:211 CYTOCHROME C-554  ali model follow..  19  1.................................................................................................................................................................................................................................ADAPFEGRKKCSSCHKAPAKDYTQDKDCVGCHVDGFTIESPKPMLTGVGCESCHGPGRN-EERCSACH........................................................................................................................................................................................... 138
72 -10.2001w7o_A mol:protein length:118 CYTOCHROME C3  ali model follow..  13  32......................................................................................................................................................................................................................VPFPH---------SKHATVECAQCHHEADGGAVKKCTTSGCHDSLEFRDKANA-AYHTQCIDCHKALKKDKKPCGKCHTT......................................................................................................................................................................................... 117
73 -9.9402cy3_A mol:protein length:118 CYTOCHROME C3  ali model follow..  13  31.....................................................................................................................................................................................................................TVPFPH---------TKHATVECVQCHHEADGGAVKKCTTSGCHDSLEFRDKANA-AFHTQCIDCHDKKPTGPTACGKCHTT......................................................................................................................................................................................... 117
74 -9.8102e84_A mol:protein length:556 High-molecular-weight cytochrome c  ali model follow..  12  87...................................................................................HKNDDKGKMSL------LEDTTAADLKNIYHANCIGCHTEQAKAGKKTGPQDGECRSCHNPKPMASSWKQIGL-------------------------------------------------------------FRHVAAKAIAPVNDPQKNCGACHHVYDEAAKKLDSCRACHGDARVEKKP---AAHTQCITCH-KADSGPVSCAGCHDPAMQAKFKVVR............................................................................................................................................................................... 265
75 -9.6903nyb_B mol:protein length:83 Protein AIR2  ali model follow..  15  4.......................................................................................................................................................................................................................................KKVQCTLCK----SKKHSKERCPSLVDDNEKAKPKVLPFHTIYCYNCGGKGHFGDD-CKE............................................................................................................................................................................................. 64

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Sikora S, Godzik A. Combination of multiple alignment analysis and surface mapping paves a way for a detailed pathway reconstruction--the case of VHL (von Hippel-Lindau) protein and angiogenesis regulatory pathway. Protein Sci. 2004 Mar;13(3):786-96. Epub 2004 Feb 06.