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Query: IDP00328 gene: murI; glutamate racemase Cj1652c [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819], from CSGID

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKIGVFDSGVGGLSVLKSLYEARLFDEIIYYGDTARVPYGVKDKDTIIKFCLEALDFFEQFQIDMLIIACNTASAYALDALRAKAHFPVYGVIDAGVEATIKALHDKNKEILVIATKATIKSEEYQKRLLSQGYTNINALATGLFVPMVEEGIFEGDFLQSAMEYYFKNITTPDALILACTHFPLLGRSLSKYFGDKTKLIHSGDAIVEFLKERENIDLKNHKAKLHFYASSDVESLKNTAKIWLNLLRKLast
1 -84.500PF01177.22; R7EMK1_9BACE/12-229; Asp/Glu/Hydantoin racemase  ali follow..  33  1..IGIFDSGYGGLTILSKIREALPQYDYIYLGDNARAPYGTRSFEIVYEFTLQAVTKLFEMGCHLVILACNTASAKALRNIQMNDMRRVLGVIRPTVECIGNI--TQSRHVGVLATAGTIKSESYPLEVHKFPDIKVSGEACPLWVSLVENNEAQGEGTDYFIRKNIGNLTQIDTVILGCTHFPLLLPKIQQYMPDGITTVTQGELVADSL....................................... 218
2 -11.100PF07302.11; Q89Q90_BRADU/10-227; AroM protein  ali follow..  9  25.GIEIELRGALDGMSRAEIDAIPPMDYDTLFTLLPNGDGVTISKKEVERRASQQITRFKHEGVGVTLMAC--TGKFPNLAADGLVILPSAIL------HNLVEAVLPKGRLGVF-SPLPEQTVLIDKKWQRDGVEVVGITLRP---------GSSDAVVDEAARTMADL--EPDLVVMDCISYTSNKARVRTAYP--GPAILGIAAAARIVEELV................................... 218
3 -10.700PF17645.1; A0A109CB38_9BURK/17-235; Arylmalonate decarboxylase  ali follow..  12  1..............VPTDGQALYGGRDVFIARGLGIPGISPEGFDTVVDRILALAVELRDAGAQAVSLMGTSLSNALRARMQDATGLPCTTMSHAIVDSLRALGI---RRVAVATAYIDTLNQRLVAYLASCG-IAVTHIEGLSITGVEAVGQVTGETLMALAERTVAADRSAQGLLISCGGLLTLDVPLEDKLG--LPVTSSSPAGFWDLMRAAGLDPA.............................. 211
4 -8.620PF12850.7; Q0RIP6_FRAAA/42-225; Calcineurin-like phosphoesterase superfamily domain  ali follow..  15  1MKLGIVSDVHCEAALLETAAREMVEEEILLAGD---------------------------------AHFEYRFSNEVTEVIRAFDMRYISGNHEWRLMGPTGQRAREAPHV-------RAANRDFVEAIPTTIDTVVDGRSL-RMIHGCPWPPYDRYLNPADPDYARCGDLGVDILVLGHTHLPHLQRV------GGTLVINPGS............................................. 161
5 -8.470PF06551.12; GLTF_ECOLI/33-146; Protein of unknown function (DUF1120 topsan)  ali follow..  10  1............LTIIGEYT---PGACTPVVTGGGIVDYGKHHNSALNPTGKSNKLVQLGRKNSTLNITCTAPTLIAVTSKDNRQSTIVALNDTSYIEKAYDTLKGTKNAFGLGSAPNGQKIGAAS............................................................................................................................ 114
6 -8.030PF13277.6; R6CQM5_9FIRM/4-252; YmdB-like protein  ali follow..  12  1LFVG----GTAGIRRLYKLKRDLAIDLTIINGENSAVGNG---------VNRASYQRLIRLGADVVTGGNHSFQQKGCTSLYDEAETLLRNFPEGVSGRGSCIVDVFPVKIAVISLMGTVGLEALDNPFFCVDKL-IEEADTPNIFVDFHAEATSEKKAMGQYLA-----GRVTGVFGTHTHVQTADETI............................................................ 180
7 -7.570PF01026.21; Y454_HAEIN/4-256; TatD related DNase  ali follow..  12  61..CGVHPLDFEEEP-AERLLRLAQDPKVIAIGEIGLDYYYSADNKAAQQAVFGSQIDIANQLDKPVIIHTRSAGDDTIAMLRQHRAEKCGGVIHCFTETMEFKKALDLGFYISCSGIVTFKNAEAIREVIRYVPMELVETDSPYLAPVPYRGKENQPAYTREVCEYVATLKGVS............................................................................ 235
8 -6.380PF00731.20; R5S1S7_9BACE/2-149; AIR carboxylase  ali follow..  13  1.KVGIIMGSTSDYEVMSGAEEMLKALDIPF---EKRVVSAHRTPDLMYEYAKT----AKARGISVIIAGAGGAAHLP-GMVAAMTTLPVIGVLNGLDSLLSIVQMPGGVPVATVAINGAKNAALIAASILALQDEGVSAR.............................................................................................................. 137
9 -6.190PF14252.6; K9VCA2_9CYAN/23-186; Domain of unknown function (DUF4347 topsan)  ali follow..  9  22AEIVILDKNGNGVEQITAKLQTVDEVHVFSHGNSGSLQLGSANSDNLPQYESQLQQW-LSDKADIVLYGCDVAAGSGSDFVDRLGELTGADIAASSDRTGRGGNWNLEFAKGDIEAPLALTPEAMAD........................................................................................................................... 159
10 -5.990PF08659.10; M2UMU6_COCH5/2217-2396; KR domain  ali follow..  11  4....VISGGLGGLG--REIMRWMVSRG------ARHFLVTSSRGVAGRADVIAFIREMEAQGVVVHAPASDISNRAVLEATLEDAS-PIKGCIQAALSDNMLSNMTVEQYHRALAPKYQGSWNLHELLPKDMDFMVFLSSMSGIIGNPAQANYAAGNTFEDGLARH.................................................................................... 162
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 8 6 2   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Rychlewski L, Zhang B, Godzik A. Fold prediction by a hierarchy of sequence, threading, and modeling methods. Protein Sci. 1998 Jun;7(6):1431-40.