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Query: IDP00597 gene: murI; glutamate racemase YPO3909 [Yersinia pestis CO92], from CSGID

Results of FFAS03 search in PfamA32U
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MATKPQDANTTSREAITSKADSPPRPTALIFDSGVGGLSVYQEIRQLLPDLHYIYAFDNVAFPYGEKSGEFIVERVLEIVTAVQQRHPLAIVVIACNTASTVSLPALRERFAFPVVGVVPAIKPAVRLTRNGVVGLLATRATVHASYTLDLIARFATDCKIELLGSSELVEVAETKLHGGVVPLEVLKKILHPWLSMREPPDTIVLGCTHFPLLTEELAQVLPEGTRMVDSGAAIARRTAWLISSQENVISSQDENIAYCMALDEDTDALLPVLQSYGFPKLQKLPILast
1 -82.000PF01177.22; R7EMK1_9BACE/12-229; Asp/Glu/Hydantoin racemase  ali follow..  32  1...........................IGIFDSGYGGLTILSKIREALPQYDYIYLGDNARAPYGTRSFEIVYEFTLQAVTKLFEMG-CHLVILACNTASAKALRNIQMNDMRRVLGVIPTVECIGNITQSRHVGVLATAGTIKSESYPLEVHKLFPDIKVSGEACPLWVSLVENNEAQGEGTDYFIRKNIGNLLAKDTQIDTVILGCTHFPLLLPKIQQYMPDGITTVTQGELVADSL................................................ 218
2 -11.700PF17645.1; A0A109CB38_9BURK/17-235; Arylmalonate decarboxylase  ali follow..  13  1.......................................VPTDGQALYGGRDVRFI--ARGLGIPGISPEGFDTVVDRILALALRDAGAQAVSLMGTSLSFYLRARMQDATGLPCTTMSHAIVDSLRALGIRRVAVA----TAYIDTLNQRLVAYLASCGIAVTHIEGL---ITGVEAVGQVTGETLMALAERTVAADRSAQGLLISCGGLLTLDVPLEDKLGLPV--TSSSPAGFWDLMRAA............................................ 206
3 -11.500PF07302.11; Q89Q90_BRADU/10-227; AroM protein  ali follow..  15  24.........................PGIEIELRGALDGMSRAEIDAIPPMDGYDTLFTLLPNGDGVTISKKEVERRASQQITRFKHEGVGVTLMAC--TGKFPNLAADGLVILPSAILHNLVEAVLP---KGRLGVF-SPLPEQTVLIDKKWQRDGVEVVGITLRPGSSDAVVDEAART-----------------ADLEPDLVVMDCISYTSNKARVRTAYP--GPAILGIAAAARIVEELV............................................ 218
4 -6.970PF06551.12; GLTF_ECOLI/33-146; Protein of unknown function (DUF1120 topsan)  ali follow..  10  1.....................................LTIIGEYT---PGACTPVVTGGGIVDYGKHHNSALNPTGKSNKLVQLGRKNST-LNITCTAPTLIAVTSKDNRQSTIVALNDTSYTLVDMKGTKNAFGLGSAPNGQKIGAAS.......................................................................................................................................... 114
5 -6.630PF16114.5; H2TQH3_TAKRU/244-421; ATP citrate lyase citrate-binding  ali follow..  14  32...........................IWTMVAGGGSVVYSDTICDLGGVDELANYGEYS----GAPSEQQTYDYAKTILSLMTRERHPEGKVLIIGGSIANF-----TNVAATFKGIVRAIKDYQTPLKEHEVTIFVRRGGPNYQEGLRVMGEVGKTTGI.............................................................................................................................. 157
6 -6.600PF06057.11; Q8PB04_XANCP/266-453; Bacterial virulence protein (VirJ)  ali follow..  20  2..........................TFAIFVSGDGGAGLDEEVADALVAQGIVVGLDSLRYFWSERTPQGFATDLDRIARFYAQRWQRRRVVLIGFSQGADVLPAAINKLPAPTKQNLRMT..................................................................................................................................................................... 99
7 -6.410PF00731.20; R5S1S7_9BACE/2-149; AIR carboxylase  ali follow..  11  2...........................VGIIMGSTSDYEVMSGAEEMLKALDIPF---EKRVVSAHRTPDLMYEYAKTA-----KARGISVIIAGAGGAAHLP-GMVAAMTTLPVIGVLDSLLSIVQMPGGVPVATVAINGAKNAALIAASILALQDE................................................................................................................................. 132
8 -6.380PF01026.21; Y454_HAEIN/4-256; TatD related DNase  ali follow..  12  75........................................AERLLRLAQDPKVIAIGEIGLDYYYSADNKAAQQAVFGSQIDIANQLDKP-VIIHTRSAGDDTIAMLRQHRAEKCGGVIHCFTETMEFKKALDLGFISCSGIVNAEAIREVIRYVPMERLLVETDSPYLAPVPYRGKENQPAYTREVCEYVATL............................................................................................. 231
9 -6.340PF12850.7; Q0RIP6_FRAAA/42-225; Calcineurin-like phosphoesterase superfamily domain  ali follow..  11  3...........................LGIVSDVHCEAALLETAAREMVEEEILLAGD----------------------------------AHFEYRFSNEVTEVIRAFDMRYISGNHEWRLMGPTGQRAREAPHVRAANRDFVEAIPTTIDTVVDGRSL----------RMIHGCPWPPYDRYLNPADPDYARCGDLGVDILVLGHTHLPHLQRV------GGTLVINPGS...................................................... 161
10 -6.220PF13277.6; R6CQM5_9FIRM/4-252; YmdB-like protein  ali follow..  10  8.................................GTAGIRRLYKLKRDLAIDLTIINGENSAVGNGVNRASY-----------RLIRLGADVVTGGNHSFQQKGCTSLYDEAETLLRPAVSGRGSCIVDVFPVKIAVISLMGTVGLEALDNPFFCVDK---IEEADTPNIFVDFHAEATSEKKAMGQY---------LAGRVTGVFGTHTHVQTADETI---LGGHTAYITDVGMTGPELSVLGVDTEIAIQKMKYHCPVTFKISENPAFINAVAVEFDEKLGKANKI 246
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 6 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Pio F, Chu Z, Reed JC, Godzik A. PAAD - a new protein domain associated with apoptosis, cancer and autoimmune diseases. Trends Biochem Sci. 2001 Feb;26(2):85-7.